CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67855
CDY45684

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41760.1	CDX67855	AT3G61150.1	21798944
AT2G41760.1	CDY45684	AT3G61150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000239.1-P	Field mustard	cytosol	87.29	96.26
CDY22539	Canola	cytosol	93.22	95.65
AT2G41760.1	Thale cress	cytosol	82.2	87.78
VIT_08s0007g08710.t01	Wine grape	cytosol	56.36	61.29
KRH33079	Soybean	cytosol	53.81	57.99
PGSC0003DMT400070177	Potato	cytosol	53.81	55.46
Solyc04g015760.2.1	Tomato	cytosol	53.39	55.26
TraesCS1B01G253700.1	Wheat	cytosol	49.58	48.95
TraesCS1A01G242200.1	Wheat	cytosol	50.0	48.76
Os05t0387900-01	Rice	cytosol	47.46	48.48
TraesCS1D01G242100.1	Wheat	cytosol	48.73	48.12
GSMUA_Achr11P...	Banana	cytosol	49.15	46.59
EES19457	Sorghum	cytosol, plastid	46.19	44.86
Zm00001d038071_P002	Maize	cytosol, plastid	47.46	42.91

Protein Annotations

KEGG:00240+3.5.1.-	KEGG:00260+3.5.1.-	KEGG:00332+3.5.1.-	KEGG:00364+3.5.1.-	KEGG:00480+3.5.1.-	KEGG:00520+3.5.1.-
KEGG:00600+3.5.1.-	KEGG:00760+3.5.1.-	KEGG:00930+3.5.1.-	MapMan:19.2.1.2.1.3	Gene3D:3.10.620.10	GO:A0A078HAC1
UniProt:A0A078HAC1	EnsemblPlants:CDY35400	ProteinID:CDY35400	ProteinID:CDY35400.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0016787	GO:GO:0016811	EnsemblPlantsGene:GSBRNA2T00058385001	InterPro:IPR037132	InterPro:N_Gln_amidohydro_ab_roll_sf	PFAM:PF09764
PANTHER:PTHR13035	InterPro:Prot_N_Gln_amidohydro_ab_roll	UniParc:UPI0004EDC165	:	:	:

Description

BnaA03g19600DBnaA03g19600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HAC1]

Coordinates

chrLK032351:-:152990..154315

Molecular Weight (calculated)

26867.9 Da

IEP (calculated)

5.740

GRAVY (calculated)

-0.126

Length

236 amino acids

Sequence
(BLAST)

001: MSSVIISELP AMDATRFQHT PYYCEENVYL LCKTLCESGV ADETGSDLFV VFISNERKQA SMFGLCLHYT LFHVPLWHQK ASTRADGIVL WDYHVICVQR
101: KKESDSEPLV WDLDSTLPFP SPLASYVTET IQPSFQLFAE YQRFFRVVHA PLFFKHFASD RRHMKAPDGS WIAQPPPYQP IVAQDGVLHN LTEYTAMSAT
201: DTLSRLDPDT VSEAISQKLG VFVSHSQLQD LFTKLP

Best Arabidopsis Sequence Match ( AT2G41760.1 )
(BLAST)

001: MSGVTSEPIA MDATRFQHTP YYCEENVYLL CKTLCENGVA EATCSDLFVV FISNEKKQVP LWHQKASTRA DGVVLWDYHV ICVQRKKESD SEPLVWDLDS
101: TLPFPSPLAS YVTETIQPSF QLFAEYQRFF RIVHAPLFFK HFASDRRHMK EPDGSWTAQP PPYEPIVAQD GILHNLSEYI AMSGADTLSS LDPETVTAAI
201: SQKLGVVVSH TQLQDLFTKL P

Arabidopsis Description

Protein N-terminal glutamine amidohydrolase [Source:UniProtKB/Swiss-Prot;Acc:O22944]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.