Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400019986 | |
| PGSC0003DMT400071377 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G41760.1 | PGSC0003DMT400019986 | AT3G61150.1 | 21798944 |
| AT2G41760.1 | PGSC0003DMT400071377 | AT3G61150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g015760.2.1 | Tomato | cytosol | 94.32 | 94.74 |
| KRH33079 | Soybean | cytosol | 59.39 | 62.1 |
| VIT_08s0007g08710.t01 | Wine grape | cytosol | 57.21 | 60.37 |
| AT2G41760.1 | Thale cress | cytosol | 55.02 | 57.01 |
| Bra000239.1-P | Field mustard | cytosol | 51.53 | 55.14 |
| CDY22539 | Canola | cytosol | 55.02 | 54.78 |
| CDY35400 | Canola | cytosol | 55.46 | 53.81 |
| Os05t0387900-01 | Rice | cytosol | 53.71 | 53.25 |
| TraesCS1A01G242200.1 | Wheat | cytosol | 54.15 | 51.24 |
| TraesCS1B01G253700.1 | Wheat | cytosol | 53.28 | 51.05 |
| TraesCS1D01G242100.1 | Wheat | cytosol | 53.28 | 51.05 |
| GSMUA_Achr11P... | Banana | cytosol | 54.59 | 50.2 |
| EES19457 | Sorghum | cytosol, plastid | 51.53 | 48.56 |
| Zm00001d038071_P002 | Maize | cytosol, plastid | 50.66 | 44.44 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400070177 | EnsemblPlantsGene:PGSC0003DMG400027277 | EntrezGene:102604749 | Gene3D:3.10.620.10 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0016787 | GO:GO:0016811 | InterPro:IPR037132 | InterPro:N_Gln_amidohydro_ab_roll_sf | InterPro:Prot_N_Gln_amidohydro_ab_roll | PANTHER:PTHR13035 |
| PFAM:PF09764 | PGSC:PGSC0003DMG400027277 | RefSeq:XP_006350187.1 | SEG:seg | UniParc:UPI0002960500 | UniProt:M1CLS5 |
| MapMan:19.2.1.2.1.3 | : | : | : | : | : |
Description
Protein N-terminal glutamine amidohydrolase [Source:PGSC_GENE;Acc:PGSC0003DMG400027277]
Coordinates
chr4:-:10146062..10152658
Molecular Weight (calculated)
25794.5 Da
IEP (calculated)
4.831
GRAVY (calculated)
-0.099
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTSNLELEV SSSLTAPSLQ VPTFHHTPYY CEENIYLLCK KLCDDGLADP DGSDLFVIFI SNEKKQIPLW HQKASQRAEG VILWDYHVIC VQKKRNENSL
101: SLVWDLDSSL PFPSPLGTYV ADSIRPSIQI FSEFKRFFRV VHAPIFLRHF ASDRRHMKDS AGNWIAEPPS HEAIVAEDGA VHNLNEYITV SPDDVVKNVE
201: ADTVNVVFSE KLGVVIGEDD LLGFFSLIS
101: SLVWDLDSSL PFPSPLGTYV ADSIRPSIQI FSEFKRFFRV VHAPIFLRHF ASDRRHMKDS AGNWIAEPPS HEAIVAEDGA VHNLNEYITV SPDDVVKNVE
201: ADTVNVVFSE KLGVVIGEDD LLGFFSLIS
001: MSGVTSEPIA MDATRFQHTP YYCEENVYLL CKTLCENGVA EATCSDLFVV FISNEKKQVP LWHQKASTRA DGVVLWDYHV ICVQRKKESD SEPLVWDLDS
101: TLPFPSPLAS YVTETIQPSF QLFAEYQRFF RIVHAPLFFK HFASDRRHMK EPDGSWTAQP PPYEPIVAQD GILHNLSEYI AMSGADTLSS LDPETVTAAI
201: SQKLGVVVSH TQLQDLFTKL P
101: TLPFPSPLAS YVTETIQPSF QLFAEYQRFF RIVHAPLFFK HFASDRRHMK EPDGSWTAQP PPYEPIVAQD GILHNLSEYI AMSGADTLSS LDPETVTAAI
201: SQKLGVVVSH TQLQDLFTKL P
Arabidopsis Description
Protein N-terminal glutamine amidohydrolase [Source:UniProtKB/Swiss-Prot;Acc:O22944]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.