Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g091630.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G41760.1 | Solyc01g091630.2.1 | AT3G61150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400070177 | Potato | cytosol | 94.74 | 94.32 |
| KRH33079 | Soybean | cytosol | 57.46 | 59.82 |
| VIT_08s0007g08710.t01 | Wine grape | cytosol | 56.58 | 59.45 |
| AT2G41760.1 | Thale cress | cytosol | 55.7 | 57.47 |
| Bra000239.1-P | Field mustard | cytosol | 51.32 | 54.67 |
| CDY22539 | Canola | cytosol | 54.82 | 54.35 |
| CDY35400 | Canola | cytosol | 55.26 | 53.39 |
| Os05t0387900-01 | Rice | cytosol | 53.95 | 53.25 |
| TraesCS1A01G242200.1 | Wheat | cytosol | 53.95 | 50.83 |
| TraesCS1B01G253700.1 | Wheat | cytosol | 53.07 | 50.63 |
| TraesCS1D01G242100.1 | Wheat | cytosol | 53.07 | 50.63 |
| GSMUA_Achr11P... | Banana | cytosol | 53.07 | 48.59 |
| EES19457 | Sorghum | cytosol, plastid | 50.88 | 47.74 |
| Zm00001d038071_P002 | Maize | cytosol, plastid | 50.0 | 43.68 |
Protein Annotations
| EnsemblPlants:Solyc04g015760.2.1 | EnsemblPlantsGene:Solyc04g015760.2 | Gene3D:3.10.620.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016787 |
| GO:GO:0016811 | InterPro:IPR037132 | InterPro:N_Gln_amidohydro_ab_roll_sf | InterPro:Prot_N_Gln_amidohydro_ab_roll | PANTHER:PTHR13035 | PFAM:PF09764 |
| SEG:seg | UniParc:UPI0002766D98 | UniProt:K4BQ78 | MapMan:19.2.1.2.1.3 | : | : |
Description
No Description!
Coordinates
chr4:-:6045987..6051321
Molecular Weight (calculated)
25677.3 Da
IEP (calculated)
4.942
GRAVY (calculated)
-0.138
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSNLELEVR SSATVPSLQV PTFHHTPYYC EENIYLLCKK LCDDGLADPN GSDLFVIFIS NEKKQIPLWH QKASQRAEGV ILWDYHVICV QKKRNENSSS
101: LVWDLDSSLP FPSSLGTYVA DSIRPSIQIF SEFKRFFRVV HAPIFLRHFA SDRRHMKDSA GNWTADPPSY EAIVAEDGAV HNLNEYITVS PDDVVKNVEA
201: DTVNVVLSEK LGVVIGEDDL LGFFSLIS
101: LVWDLDSSLP FPSSLGTYVA DSIRPSIQIF SEFKRFFRVV HAPIFLRHFA SDRRHMKDSA GNWTADPPSY EAIVAEDGAV HNLNEYITVS PDDVVKNVEA
201: DTVNVVLSEK LGVVIGEDDL LGFFSLIS
001: MSGVTSEPIA MDATRFQHTP YYCEENVYLL CKTLCENGVA EATCSDLFVV FISNEKKQVP LWHQKASTRA DGVVLWDYHV ICVQRKKESD SEPLVWDLDS
101: TLPFPSPLAS YVTETIQPSF QLFAEYQRFF RIVHAPLFFK HFASDRRHMK EPDGSWTAQP PPYEPIVAQD GILHNLSEYI AMSGADTLSS LDPETVTAAI
201: SQKLGVVVSH TQLQDLFTKL P
101: TLPFPSPLAS YVTETIQPSF QLFAEYQRFF RIVHAPLFFK HFASDRRHMK EPDGSWTAQP PPYEPIVAQD GILHNLSEYI AMSGADTLSS LDPETVTAAI
201: SQKLGVVVSH TQLQDLFTKL P
Arabidopsis Description
Protein N-terminal glutamine amidohydrolase [Source:UniProtKB/Swiss-Prot;Acc:O22944]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.