Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g067830.2.1 | |
| Solyc02g093360.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G61150.1 | Solyc02g067830.2.1 | AT3G27580.1 | 21798944 |
| AT3G61150.1 | Solyc02g093360.2.1 | AT3G27580.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400071377 | Potato | nucleus | 98.66 | 98.66 |
| VIT_15s0048g02000.t01 | Wine grape | nucleus | 86.36 | 87.42 |
| Os09t0526300-00 | Rice | nucleus | 13.64 | 85.5 |
| KRH40539 | Soybean | nucleus | 81.73 | 81.83 |
| KRH00641 | Soybean | nucleus | 81.24 | 81.14 |
| KRH48236 | Soybean | nucleus | 80.88 | 80.1 |
| KRH65144 | Soybean | nucleus | 81.0 | 79.55 |
| CDY18903 | Canola | nucleus | 61.27 | 71.35 |
| GSMUA_Achr1P18760_001 | Banana | nucleus | 65.41 | 71.03 |
| AT4G00730.1 | Thale cress | nucleus | 69.31 | 70.95 |
| Bra037355.1-P | Field mustard | nucleus | 68.21 | 70.89 |
| CDY51143 | Canola | nucleus | 68.21 | 70.89 |
| CDX74347 | Canola | nucleus | 68.45 | 70.87 |
| CDX91894 | Canola | nucleus | 68.45 | 70.78 |
| CDX74762 | Canola | nucleus | 61.02 | 70.76 |
| CDY07201 | Canola | nucleus | 67.72 | 70.56 |
| CDX67855 | Canola | nucleus | 66.14 | 69.62 |
| CDY45684 | Canola | nucleus | 66.26 | 69.39 |
| Bra003439.1-P | Field mustard | nucleus | 66.14 | 69.17 |
| AT3G61150.1 | Thale cress | nucleus | 65.9 | 66.96 |
| Bra004934.1-P | Field mustard | nucleus | 63.82 | 66.67 |
| GSMUA_Achr3P12410_001 | Banana | nucleus | 57.37 | 63.48 |
| Os02t0674800-01 | Rice | nucleus | 62.0 | 63.31 |
| Zm00001d040090_P002 | Maize | nucleus | 61.51 | 62.89 |
| HORVU6Hr1G065300.3 | Barley | nucleus | 61.27 | 62.88 |
| HORVU0Hr1G013510.1 | Barley | cytosol | 10.6 | 62.59 |
| TraesCS6A01G255800.1 | Wheat | nucleus | 61.14 | 62.44 |
| TraesCS6B01G269700.1 | Wheat | nucleus | 61.02 | 62.31 |
| TraesCS6D01G237000.1 | Wheat | nucleus | 61.02 | 62.31 |
| EES02604 | Sorghum | nucleus | 61.63 | 62.09 |
| Os04t0569100-01 | Rice | nucleus | 58.22 | 59.31 |
| Zm00001d040091_P001 | Maize | nucleus | 18.64 | 58.62 |
| EER99222 | Sorghum | nucleus | 62.24 | 58.6 |
| HORVU5Hr1G080700.2 | Barley | nucleus | 59.44 | 57.21 |
| TraesCS5B01G315100.2 | Wheat | nucleus | 59.2 | 57.18 |
| TraesCS5D01G320600.1 | Wheat | nucleus | 59.07 | 57.13 |
| TraesCS5A01G314400.2 | Wheat | nucleus | 59.07 | 57.13 |
| Solyc10g005330.2.1 | Tomato | nucleus | 48.72 | 56.18 |
| Zm00001d021236_P004 | Maize | nucleus | 61.27 | 55.7 |
| KXG26935 | Sorghum | nucleus | 54.32 | 55.61 |
| Solyc03g031760.2.1 | Tomato | cytosol | 42.27 | 55.17 |
| Solyc02g080260.2.1 | Tomato | nucleus | 49.33 | 53.93 |
| TraesCS2B01G419200.1 | Wheat | nucleus | 49.09 | 51.34 |
| Solyc03g098200.2.1 | Tomato | nucleus | 45.07 | 51.32 |
| Solyc03g026070.2.1 | Tomato | nucleus | 50.18 | 51.05 |
| TraesCS2D01G398600.1 | Wheat | nucleus | 48.6 | 50.89 |
| HORVU2Hr1G095210.1 | Barley | nucleus | 47.99 | 50.51 |
| Zm00001d026088_P002 | Maize | nucleus | 51.28 | 50.48 |
| TraesCS2A01G401200.3 | Wheat | nucleus | 49.09 | 50.38 |
| Solyc06g072310.2.1 | Tomato | nucleus | 43.48 | 49.79 |
| Solyc06g035940.2.1 | Tomato | nucleus | 37.64 | 45.71 |
| Solyc12g005830.1.1 | Tomato | nucleus | 41.41 | 45.27 |
| Solyc03g120620.2.1 | Tomato | nucleus | 42.02 | 44.52 |
| HORVU7Hr1G036950.2 | Barley | cytosol | 9.87 | 44.26 |
| Solyc06g050160.2.1 | Tomato | nucleus | 34.47 | 43.34 |
| HORVU4Hr1G062510.2 | Barley | cytosol | 14.62 | 43.32 |
| Solyc07g041850.1.1 | Tomato | nucleus | 34.1 | 41.18 |
| Solyc08g076370.2.1 | Tomato | nucleus | 42.14 | 41.09 |
| Solyc04g025740.1.1 | Tomato | nucleus | 6.82 | 37.84 |
| HORVU3Hr1G108430.1 | Barley | cytosol | 15.1 | 37.24 |
| Solyc09g057530.1.1 | Tomato | cytosol | 5.97 | 35.77 |
| Solyc09g066070.2.1 | Tomato | cytosol | 18.76 | 35.73 |
| Solyc09g060140.2.1 | Tomato | mitochondrion | 15.96 | 35.6 |
| Solyc09g060170.1.1 | Tomato | cytosol | 14.74 | 35.17 |
| Solyc09g057540.2.1 | Tomato | cytosol | 20.58 | 34.0 |
| Solyc11g011940.1.1 | Tomato | nucleus | 29.35 | 33.61 |
| Solyc08g062510.2.1 | Tomato | nucleus | 26.67 | 33.54 |
| Solyc10g018020.1.1 | Tomato | extracellular | 13.64 | 33.33 |
| Solyc09g066030.1.1 | Tomato | nucleus | 29.11 | 33.06 |
| Solyc10g006420.2.1 | Tomato | cytosol | 21.07 | 32.83 |
| Solyc07g026570.1.1 | Tomato | nucleus | 5.6 | 32.62 |
| Solyc09g060130.1.1 | Tomato | cytosol | 17.54 | 32.43 |
| Solyc11g022410.1.1 | Tomato | extracellular | 2.92 | 32.43 |
| Solyc09g066050.2.1 | Tomato | cytosol | 21.68 | 32.19 |
| Solyc11g022420.1.1 | Tomato | cytosol | 18.76 | 32.15 |
| Solyc10g018000.1.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 26.55 | 31.19 |
| Solyc05g015030.1.1 | Tomato | cytosol | 17.78 | 30.8 |
| Solyc04g025490.1.1 | Tomato | cytosol | 9.01 | 30.58 |
| Solyc08g062520.2.1 | Tomato | cytosol | 19.0 | 30.53 |
| Solyc10g018030.1.1 | Tomato | cytosol | 15.35 | 30.51 |
| Solyc07g026560.1.1 | Tomato | cytosol | 17.3 | 30.02 |
| Solyc11g022430.1.1 | Tomato | cytosol | 6.46 | 29.61 |
| Solyc04g025480.1.1 | Tomato | cytosol | 23.02 | 28.86 |
| Solyc07g037910.1.1 | Tomato | cytosol | 7.31 | 28.44 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR002913 |
| UniProt:K4AZA3 | PFAM:PF00046 | PFAM:PF01852 | ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS50848 |
| PANTHER:PTHR24326 | PANTHER:PTHR24326:SF487 | SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 | SUPFAM:SSF55961 |
| InterPro:START_lipid-bd_dom | EnsemblPlantsGene:Solyc01g091630.2 | EnsemblPlants:Solyc01g091630.2.1 | UniParc:UPI00027683C2 | SEG:seg | : |
Description
No Description!
Coordinates
chr1:-:85221417..85226892
Molecular Weight (calculated)
89855.2 Da
IEP (calculated)
6.281
GRAVY (calculated)
-0.340
Length
821 amino acids
Sequence
(BLAST)
(BLAST)
001: MNFGGFLDNN SGGGGARIVA DIPFNHNNSS SNNDNKNNMP TGAISQPRLL PQSLAKNMFN SPGLSLALQT GMEGQSEVTR MAENYEGNNS VGRRSREEEP
101: DSRSGSDNLE GASGDEQDAT DKPPRKKRYH RHTPQQIQEL ESLFKECPHP DEKQRLELSK RLSLETRQVK FWFQNRRTQM KTQLERHENS ILRQENDKLR
201: AENMSIREAM RNPICTNCGG PAMIGEISLE EQHLRIENAR LKDELDRVCA LAGKFLGRPI SSLVTSMPPP MPNSSLELGV GSNGFGGMSN VPTTLPLAPP
301: DFGVGISNSL PVVPSTRQST GIERSLERSM YLELALAAME ELVKMAQTDE PLWFRSIEGG REILNHEEYI RTFTPCIGMR PNSFISEASR ETGMVIINSL
401: ALVETLMDSN KWAEMFPCLI ARTSTTDVIS SGMGGTRNGA LQLMHAELQV LSPLVPIREV NFLRFCKQHA EGVWAVVDVS IDTIRETSGA PTFPNSRRLP
501: SGCVVQDMPN GYSKVTWVEH AEYEEGANHH LYRQLISAGM GFGAQRWVAT LQRQCECLAI LMSSTVSARD HTAITPSGRR SMLKLAQRMT NNFCAGVCAS
601: TVHKWNKLCA GNVDEDVRVM TRKSVDDPGE PAGIVLSAAT SVWLPVSPQR LFDFLRDERL RSEWDILSNG GPMQEMAHIA KGQDHGNCVS LLRASAMNAN
701: QSSMLILQET CIDAAGALVV YAPVDIPAMH VVMNGGDSAY VALLPSGFSI VPDGPGSRGS NGPSCNGGPD QRISGSLLTV AFQILVNSLP TAKLTVESVE
801: TVNNLISCTV QKIKAALQCE S
101: DSRSGSDNLE GASGDEQDAT DKPPRKKRYH RHTPQQIQEL ESLFKECPHP DEKQRLELSK RLSLETRQVK FWFQNRRTQM KTQLERHENS ILRQENDKLR
201: AENMSIREAM RNPICTNCGG PAMIGEISLE EQHLRIENAR LKDELDRVCA LAGKFLGRPI SSLVTSMPPP MPNSSLELGV GSNGFGGMSN VPTTLPLAPP
301: DFGVGISNSL PVVPSTRQST GIERSLERSM YLELALAAME ELVKMAQTDE PLWFRSIEGG REILNHEEYI RTFTPCIGMR PNSFISEASR ETGMVIINSL
401: ALVETLMDSN KWAEMFPCLI ARTSTTDVIS SGMGGTRNGA LQLMHAELQV LSPLVPIREV NFLRFCKQHA EGVWAVVDVS IDTIRETSGA PTFPNSRRLP
501: SGCVVQDMPN GYSKVTWVEH AEYEEGANHH LYRQLISAGM GFGAQRWVAT LQRQCECLAI LMSSTVSARD HTAITPSGRR SMLKLAQRMT NNFCAGVCAS
601: TVHKWNKLCA GNVDEDVRVM TRKSVDDPGE PAGIVLSAAT SVWLPVSPQR LFDFLRDERL RSEWDILSNG GPMQEMAHIA KGQDHGNCVS LLRASAMNAN
701: QSSMLILQET CIDAAGALVV YAPVDIPAMH VVMNGGDSAY VALLPSGFSI VPDGPGSRGS NGPSCNGGPD QRISGSLLTV AFQILVNSLP TAKLTVESVE
801: TVNNLISCTV QKIKAALQCE S
001: MNFGSLFDNT PGGGSTGARL LSGLSYGNHT AATNVLPGGA MAQAAAAASL FSPPLTKSVY ASSGLSLALE QPERGTNRGE ASMRNNNNVG GGGDTFDGSV
101: NRRSREEEHE SRSGSDNVEG ISGEDQDAAD KPPRKKRYHR HTPQQIQELE SMFKECPHPD EKQRLELSKR LCLETRQVKF WFQNRRTQMK TQLERHENAL
201: LRQENDKLRA ENMSIREAMR NPICTNCGGP AMLGDVSLEE HHLRIENARL KDELDRVCNL TGKFLGHHHN HHYNSSLELA VGTNNNGGHF AFPPDFGGGG
301: GCLPPQQQQS TVINGIDQKS VLLELALTAM DELVKLAQSE EPLWVKSLDG ERDELNQDEY MRTFSSTKPT GLATEASRTS GMVIINSLAL VETLMDSNRW
401: TEMFPCNVAR ATTTDVISGG MAGTINGALQ LMNAELQVLS PLVPVRNVNF LRFCKQHAEG VWAVVDVSID PVRENSGGAP VIRRLPSGCV VQDVSNGYSK
501: VTWVEHAEYD ENQIHQLYRP LLRSGLGFGS QRWLATLQRQ CECLAILISS SVTSHDNTSI TPGGRKSMLK LAQRMTFNFC SGISAPSVHN WSKLTVGNVD
601: PDVRVMTRKS VDDPGEPPGI VLSAATSVWL PAAPQRLYDF LRNERMRCEW DILSNGGPMQ EMAHITKGQD QGVSLLRSNA MNANQSSMLI LQETCIDASG
701: ALVVYAPVDI PAMHVVMNGG DSSYVALLPS GFAVLPDGGI DGGGSGDGDQ RPVGGGSLLT VAFQILVNNL PTAKLTVESV ETVNNLISCT VQKIRAALQC
801: ES
101: NRRSREEEHE SRSGSDNVEG ISGEDQDAAD KPPRKKRYHR HTPQQIQELE SMFKECPHPD EKQRLELSKR LCLETRQVKF WFQNRRTQMK TQLERHENAL
201: LRQENDKLRA ENMSIREAMR NPICTNCGGP AMLGDVSLEE HHLRIENARL KDELDRVCNL TGKFLGHHHN HHYNSSLELA VGTNNNGGHF AFPPDFGGGG
301: GCLPPQQQQS TVINGIDQKS VLLELALTAM DELVKLAQSE EPLWVKSLDG ERDELNQDEY MRTFSSTKPT GLATEASRTS GMVIINSLAL VETLMDSNRW
401: TEMFPCNVAR ATTTDVISGG MAGTINGALQ LMNAELQVLS PLVPVRNVNF LRFCKQHAEG VWAVVDVSID PVRENSGGAP VIRRLPSGCV VQDVSNGYSK
501: VTWVEHAEYD ENQIHQLYRP LLRSGLGFGS QRWLATLQRQ CECLAILISS SVTSHDNTSI TPGGRKSMLK LAQRMTFNFC SGISAPSVHN WSKLTVGNVD
601: PDVRVMTRKS VDDPGEPPGI VLSAATSVWL PAAPQRLYDF LRNERMRCEW DILSNGGPMQ EMAHITKGQD QGVSLLRSNA MNANQSSMLI LQETCIDASG
701: ALVVYAPVDI PAMHVVMNGG DSSYVALLPS GFAVLPDGGI DGGGSGDGDQ RPVGGGSLLT VAFQILVNNL PTAKLTVESV ETVNNLISCT VQKIRAALQC
801: ES
Arabidopsis Description
ANL2Homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WV12]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.