Factsheet for Solyc06g035940.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076902	Potato	nucleus	73.67	74.33
Solyc06g050160.2.1	Tomato	nucleus	45.86	47.47
KRH35356	Soybean	nucleus	43.79	38.69
KRG91457	Soybean	nucleus	43.93	38.22
Solyc01g091630.2.1	Tomato	nucleus	45.71	37.64
Bra028295.1-P	Field mustard	nucleus	36.69	36.36
CDY31916	Canola	nucleus	35.95	36.11
Solyc03g031760.2.1	Tomato	cytosol	33.58	36.09
CDY00515	Canola	nucleus	35.8	35.96
CDX89415	Canola	cytosol, mitochondrion	9.47	35.96
Solyc03g026070.2.1	Tomato	nucleus	42.31	35.44
Solyc10g005330.2.1	Tomato	nucleus	37.13	35.25
KRH09109	Soybean	plastid	39.94	34.84
Solyc06g072310.2.1	Tomato	nucleus	36.69	34.59
KRH38560	Soybean	nucleus	39.65	34.54
Solyc03g098200.2.1	Tomato	nucleus	36.83	34.54
Solyc02g080260.2.1	Tomato	nucleus	37.43	33.69
Solyc07g041850.1.1	Tomato	nucleus	30.92	30.74
Solyc03g120620.2.1	Tomato	nucleus	35.06	30.58
Solyc12g005830.1.1	Tomato	nucleus	33.28	29.96
Solyc04g025740.1.1	Tomato	nucleus	6.51	29.73
Solyc09g057530.1.1	Tomato	cytosol	5.92	29.2
CDY39874	Canola	plasma membrane	8.28	29.17
Solyc11g022430.1.1	Tomato	cytosol	7.69	29.05
Solyc09g066070.2.1	Tomato	cytosol	18.2	28.54
Solyc09g060140.2.1	Tomato	mitochondrion	15.24	27.99
Solyc09g060170.1.1	Tomato	cytosol	14.2	27.91
CDX89416	Canola	nucleus	26.78	27.89
Bra013898.1-P	Field mustard	nucleus	25.44	27.61
Solyc04g025490.1.1	Tomato	cytosol	9.76	27.27
CDX94443	Canola	cytosol	25.3	27.23
Solyc10g018030.1.1	Tomato	cytosol	16.57	27.12
Solyc07g037910.1.1	Tomato	cytosol	8.43	27.01
Solyc07g026570.1.1	Tomato	nucleus	5.62	26.95
Solyc08g076370.2.1	Tomato	nucleus	32.69	26.25
Solyc10g018000.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	27.07	26.18
Solyc09g060130.1.1	Tomato	cytosol	17.16	26.13
Solyc07g026560.1.1	Tomato	cytosol	18.2	26.0
Solyc10g006420.2.1	Tomato	cytosol	20.12	25.81
Solyc11g022420.1.1	Tomato	cytosol	18.2	25.68
Solyc09g057540.2.1	Tomato	cytosol	18.79	25.55
Solyc09g066030.1.1	Tomato	nucleus	27.22	25.45
Solyc09g066050.2.1	Tomato	cytosol	20.56	25.14
Solyc11g011940.1.1	Tomato	nucleus	26.33	24.83
Solyc08g062510.2.1	Tomato	nucleus	23.96	24.81
Solyc10g018020.1.1	Tomato	extracellular	12.13	24.4
Solyc11g022410.1.1	Tomato	extracellular	2.66	24.32
Solyc04g025480.1.1	Tomato	cytosol	23.37	24.12
AT5G07260.1	Thale cress	cytosol	19.23	24.03
Solyc05g015030.1.1	Tomato	cytosol	15.98	22.78
Solyc08g062520.2.1	Tomato	cytosol	17.01	22.5
AT4G26920.1	Thale cress	cytosol, plasma membrane, plastid	14.5	21.26
VIT_13s0067g01580.t01	Wine grape	nucleus	2.96	17.86

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008289
InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	UniProt:K4C4W4	PFAM:PF00046
PFAM:PF01852	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF320	SMART:SM00234
SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	EnsemblPlantsGene:Solyc06g035940.2	EnsemblPlants:Solyc06g035940.2.1
UniParc:UPI0002765F39	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:+:25290922..25306791

Molecular Weight (calculated)

75637.9 Da

IEP (calculated)

5.579

GRAVY (calculated)

-0.255

Length

676 amino acids

Sequence
(BLAST)

001: MEKSTMELSN NRDGGVSGDE LTSPDGSSER RHKFSVNQIH ELESVFKVSS HPDEKTKQEL ATKFSVDKKQ VQFWFQNKRS ISKTQSERYN KRVLQQENEK
101: LRTEYAAMRE VMKKSICDPC RNKDTTIRNE NVDEKEILNE HARLKDELAR IAIHADKSLG SSSFLEGSLT SMMEKFGLEL NEVDFGKYLS SPLPTNLDVT
201: LDKSMLLNLA LDALNELLKL AMSDEPLWVR NLDGGGEMLN MEEYATTFIP IIGIKPSHFT TEATRSSGTV VGNSLTLVEM LMNESQWVEA FPCIIGKVNT
301: FDVISTGIGE GKSGTLLLIE AELQIISNVV PVREIKFLRF CQKHAEDSWI IVDVSVDTIK EGSQQYKIEK CRRLPSGCII QDMSNGYSKV TWIEHMEYDE
401: IFVDHLYRPL IRAGLGFGAQ RWMSSLQRQS ELLRVMASFV NSTVDPKGEI GMGILSQRMT RSFCAVICAT SHKWITIQKE NGKDANLMMR RNISDAGEPI
501: GVILSATKTI QLPIKSQCLF QFFTNKNLRR QWDILSCSGA MENIIHINKD ENLESSVSLL CANGGANENN MMIFQDTCTD ATGSLLVYAI VDSSKMNTVM
601: KGGDPSCVEL LPNGISILPD LSANNNKEFG SGSLVTIMFQ MLVDNISTAD LPQKSIVDAN DIISHTIHKI KSALLI

Best Arabidopsis Sequence Match ( AT3G61150.1 )
(BLAST)

001: MNFNGFLDDG AGASKLLSDA PYNNHFSFSA VDTMLGSAAI APSQSLPFSS SGLSLGLQTN GEMSRNGEIM ESNVSRKSSR GEDVESRSES DNAEAVSGDD
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST

Arabidopsis Description

HDG1HDG1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5Q4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.