Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00515 | Canola | nucleus | 96.29 | 96.29 |
| AT5G52170.2 | Thale cress | nucleus | 79.05 | 77.44 |
| KRH35356 | Soybean | nucleus | 55.87 | 49.15 |
| KRG91457 | Soybean | nucleus | 55.87 | 48.39 |
| CDY18903 | Canola | nucleus | 50.67 | 48.37 |
| CDY39874 | Canola | plasma membrane | 13.67 | 47.92 |
| CDX74762 | Canola | nucleus | 50.37 | 47.88 |
| VIT_16s0100g00670.t01 | Wine grape | nucleus | 53.49 | 45.98 |
| CDY51143 | Canola | nucleus | 53.79 | 45.82 |
| CDY07201 | Canola | nucleus | 53.34 | 45.56 |
| CDX67855 | Canola | nucleus | 52.75 | 45.51 |
| CDX89415 | Canola | cytosol, mitochondrion | 12.04 | 45.51 |
| CDY45684 | Canola | nucleus | 52.9 | 45.41 |
| CDX91894 | Canola | nucleus | 53.49 | 45.34 |
| CDX74347 | Canola | nucleus | 53.34 | 45.27 |
| KRH38560 | Soybean | nucleus | 51.41 | 44.59 |
| CDX90879 | Canola | nucleus | 46.95 | 44.13 |
| KRH09109 | Soybean | plastid | 50.67 | 44.0 |
| CDY21319 | Canola | nucleus | 46.66 | 43.85 |
| CDX76399 | Canola | nucleus | 46.36 | 43.64 |
| CDY27417 | Canola | nucleus | 45.91 | 43.28 |
| CDY16639 | Canola | nucleus | 47.1 | 43.25 |
| CDX94586 | Canola | nucleus | 46.95 | 43.17 |
| CDX98703 | Canola | nucleus | 44.13 | 42.73 |
| CDX94054 | Canola | nucleus | 43.98 | 42.59 |
| CDY66622 | Canola | nucleus | 45.62 | 42.0 |
| CDX79091 | Canola | nucleus | 45.62 | 41.15 |
| PGSC0003DMT400062470 | Potato | cytosol, nucleus, plastid | 18.57 | 41.12 |
| CDY06167 | Canola | nucleus | 43.83 | 40.97 |
| CDX96744 | Canola | nucleus | 39.67 | 39.67 |
| CDY23096 | Canola | nucleus | 7.73 | 39.39 |
| CDY10041 | Canola | nucleus | 43.69 | 39.36 |
| CDX83884 | Canola | nucleus | 39.67 | 38.98 |
| CDX68229 | Canola | nucleus | 40.71 | 38.98 |
| CDY71572 | Canola | nucleus | 22.73 | 38.93 |
| CDY19185 | Canola | nucleus | 39.08 | 38.56 |
| CDY11109 | Canola | nucleus | 40.56 | 38.45 |
| CDY26204 | Canola | nucleus | 36.26 | 38.3 |
| PGSC0003DMT400037055 | Potato | nucleus | 46.21 | 38.3 |
| Solyc03g026070.2.1 | Tomato | nucleus | 45.77 | 38.17 |
| CDX96471 | Canola | nucleus | 40.71 | 38.16 |
| CDX72984 | Canola | nucleus | 40.42 | 38.04 |
| CDY26205 | Canola | nucleus | 38.93 | 37.97 |
| CDY42097 | Canola | nucleus | 28.97 | 37.72 |
| PGSC0003DMT400042908 | Potato | nucleus | 27.64 | 37.35 |
| PGSC0003DMT400076898 | Potato | cytosol | 27.19 | 36.97 |
| PGSC0003DMT400062468 | Potato | cytosol | 19.47 | 36.69 |
| CDY49515 | Canola | plasma membrane | 43.98 | 36.5 |
| CDY12213 | Canola | nucleus | 38.04 | 35.96 |
| PGSC0003DMT400080861 | Potato | nucleus | 24.52 | 35.95 |
| Solyc06g035940.2.1 | Tomato | nucleus | 36.11 | 35.95 |
| PGSC0003DMT400086035 | Potato | nucleus | 35.07 | 35.92 |
| CDY46842 | Canola | nucleus | 44.13 | 35.78 |
| CDY48272 | Canola | nucleus | 36.55 | 34.94 |
| CDX89416 | Canola | nucleus | 33.58 | 34.82 |
| CDY19129 | Canola | nucleus | 37.59 | 34.8 |
| PGSC0003DMT400028195 | Potato | nucleus | 19.61 | 34.65 |
| CDY15339 | Canola | nucleus | 37.59 | 34.61 |
| CDX94443 | Canola | cytosol | 31.95 | 34.24 |
| PGSC0003DMT400028197 | Potato | cytosol | 16.94 | 34.23 |
| Solyc06g050160.2.1 | Tomato | nucleus | 32.69 | 33.69 |
| CDY30748 | Canola | endoplasmic reticulum | 29.27 | 33.56 |
| PGSC0003DMT400076902 | Potato | nucleus | 33.28 | 33.43 |
| CDX67929 | Canola | nucleus | 38.63 | 33.21 |
| CDX79408 | Canola | nucleus | 38.48 | 33.21 |
| CDX85461 | Canola | cytosol | 33.28 | 31.77 |
| PGSC0003DMT400092271 | Potato | nucleus | 12.18 | 30.94 |
| CDY53691 | Canola | nucleus | 31.95 | 30.28 |
| CDY62389 | Canola | cytosol | 21.99 | 30.27 |
| CDY02713 | Canola | nucleus | 33.14 | 30.18 |
| CDY43458 | Canola | nucleus | 36.4 | 30.17 |
| CDX76559 | Canola | nucleus | 32.84 | 30.11 |
| CDY08866 | Canola | nucleus | 32.84 | 30.03 |
| CDY67945 | Canola | nucleus | 30.61 | 29.9 |
| CDY03177 | Canola | nucleus | 36.55 | 29.78 |
| CDY43137 | Canola | nucleus | 30.46 | 29.75 |
| CDY21211 | Canola | nucleus | 30.61 | 29.68 |
| CDY49937 | Canola | nucleus | 30.61 | 29.68 |
| CDY33492 | Canola | nucleus | 34.92 | 29.52 |
| CDX77711 | Canola | nucleus | 35.81 | 29.28 |
| CDY69499 | Canola | cytosol | 13.22 | 29.28 |
| CDY42301 | Canola | nucleus | 30.01 | 29.28 |
| CDY16938 | Canola | nucleus | 28.53 | 29.09 |
| CDY44946 | Canola | nucleus | 27.19 | 28.24 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | GO:A0A078H288 | UniProt:A0A078H288 | EnsemblPlants:CDY31916 | ProteinID:CDY31916 |
| ProteinID:CDY31916.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008289 | EnsemblPlantsGene:GSBRNA2T00050672001 |
| InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR002913 | PFAM:PF00046 | PFAM:PF01852 |
| PFscan:PS50071 | PFscan:PS50848 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF350 | SMART:SM00234 | SMART:SM00389 |
| SUPFAM:SSF46689 | SUPFAM:SSF55961 | InterPro:START_lipid-bd_dom | UniParc:UPI0004EDB7EB | SEG:seg | : |
Description
BnaC09g28280DBnaC09g28280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H288]
Coordinates
chrLK032282:-:213869..216910
Molecular Weight (calculated)
74530.8 Da
IEP (calculated)
6.777
GRAVY (calculated)
-0.387
Length
673 amino acids
Sequence
(BLAST)
(BLAST)
001: MNGDFDISKG DDEFESDSFE AMSGDDDDKH EQRPKKKKKK MSKYRRHTSY QIQELESFFK VCPHPNEKQR LELGSKLSLE GKQIKFWFQN RRTQMKTQLE
101: RHENAILRQE NEKLRVENGI LKEAMRSPPT CNNCGGAATP GEVSHEQQQL RMENAKLKYE LDKLCALANR FIGGSISLEQ PSNGGVASQD LSLGHGFTRG
201: SSTFMDIAAV AMDEVIRLAE VDNPLWTKCS KSERDSMKHD QYTSIFAGSS RETGLVLINS LTLVETLMDT NQWAEMFECI VAVASTVEVI SNGSGGSRNG
301: ALQLMQAEFQ VMSPLVPIRQ VKFLRYCKQH GDGLWAVVDV SYDVNRESQD LKSFGGLKRL PSGCIIQDIG NGCSKVTWTE HSEYEGSHIH PLYQQLLGSS
401: VGLGATKWLA TLQRRCESYT TLSSSPDQTD LSLAGTKSTL TLAQRMRSNF YSGITASPIH KWEKLVAENV GQDTRILTRK SLQPSGVVLS AATSMWLPVT
501: QQRLFEFLCD GKCRNQWDIL CNGASMENML LIPQRQSEGR CISLLQPAGK HQNESSMLIL QETWSDASGA LVVYAPVDVP SMNMVMSGGD SANVALLPSG
601: FSISPDGSSW SDQIDTNGRL VNHESKGCLL TVGFQILVNS VPTTKLNMES VQTVNNLIAC TIHKIKAALS IPA
101: RHENAILRQE NEKLRVENGI LKEAMRSPPT CNNCGGAATP GEVSHEQQQL RMENAKLKYE LDKLCALANR FIGGSISLEQ PSNGGVASQD LSLGHGFTRG
201: SSTFMDIAAV AMDEVIRLAE VDNPLWTKCS KSERDSMKHD QYTSIFAGSS RETGLVLINS LTLVETLMDT NQWAEMFECI VAVASTVEVI SNGSGGSRNG
301: ALQLMQAEFQ VMSPLVPIRQ VKFLRYCKQH GDGLWAVVDV SYDVNRESQD LKSFGGLKRL PSGCIIQDIG NGCSKVTWTE HSEYEGSHIH PLYQQLLGSS
401: VGLGATKWLA TLQRRCESYT TLSSSPDQTD LSLAGTKSTL TLAQRMRSNF YSGITASPIH KWEKLVAENV GQDTRILTRK SLQPSGVVLS AATSMWLPVT
501: QQRLFEFLCD GKCRNQWDIL CNGASMENML LIPQRQSEGR CISLLQPAGK HQNESSMLIL QETWSDASGA LVVYAPVDVP SMNMVMSGGD SANVALLPSG
601: FSISPDGSSW SDQIDTNGRL VNHESKGCLL TVGFQILVNS VPTTKLNMES VQTVNNLIAC TIHKIKAALS IPA
001: MNGDLEVDMS RGDFNPSFFL GKLKDDEFES RSLSDDSFDA MSGDEDKQEQ RPKKKKRKTK YHRHTSYQIQ ELESFFKECP HPNEKQRLEL GKKLTLESKQ
101: IKFWFQNRRT QMKTQLERHE NVILKQENEK LRLENSFLKE SMRGSLCIDC GGAVIPGEVS FEQHQLRIEN AKLKEELDRI CALANRFIGG SISLEQPSNG
201: GIGSQHLPIG HCVSGGTSLM FMDLAMEAMD ELLKLAELET SLWSSKSEKG SMNHFPGSRE TGLVLINSLA LVETLMDTNK WAEMFECIVA VASTLEVISN
301: GSDGSRNGSI LLMQAEFQVM SPLVPIKQKK FLRYCKQHGD GLWAVVDVSY DINRGNENLK SYGGSKMFPS GCIIQDIGNG CSKVTWIEHS EYEESHTHSL
401: YQPLLSSSVG LGATKWLATL QRQCESFTML LSSEDHTGLS HAGTKSILKL AQRMKLNFYS GITASCIHKW EKLLAENVGQ DTRILTRKSL EPSGIVLSAA
501: TSLWLPVTQQ RLFEFLCDGK CRNQWDILSN GASMENTLLV PKGQQEGSCV SLLRAAGNDQ NESSMLILQE TWNDVSGALV VYAPVDIPSM NTVMSGGDSA
601: YVALLPSGFS ILPDGSSSSS DQFDTDGGLV NQESKGCLLT VGFQILVNSL PTAKLNVESV ETVNNLIACT IHKIRAALRI PA
101: IKFWFQNRRT QMKTQLERHE NVILKQENEK LRLENSFLKE SMRGSLCIDC GGAVIPGEVS FEQHQLRIEN AKLKEELDRI CALANRFIGG SISLEQPSNG
201: GIGSQHLPIG HCVSGGTSLM FMDLAMEAMD ELLKLAELET SLWSSKSEKG SMNHFPGSRE TGLVLINSLA LVETLMDTNK WAEMFECIVA VASTLEVISN
301: GSDGSRNGSI LLMQAEFQVM SPLVPIKQKK FLRYCKQHGD GLWAVVDVSY DINRGNENLK SYGGSKMFPS GCIIQDIGNG CSKVTWIEHS EYEESHTHSL
401: YQPLLSSSVG LGATKWLATL QRQCESFTML LSSEDHTGLS HAGTKSILKL AQRMKLNFYS GITASCIHKW EKLLAENVGQ DTRILTRKSL EPSGIVLSAA
501: TSLWLPVTQQ RLFEFLCDGK CRNQWDILSN GASMENTLLV PKGQQEGSCV SLLRAAGNDQ NESSMLILQE TWNDVSGALV VYAPVDIPSM NTVMSGGDSA
601: YVALLPSGFS ILPDGSSSSS DQFDTDGGLV NQESKGCLLT VGFQILVNSL PTAKLNVESV ETVNNLIACT IHKIRAALRI PA
Arabidopsis Description
HDG7homeodomain GLABROUS 7 [Source:TAIR;Acc:AT5G52170]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.