Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96744 | Canola | nucleus | 94.74 | 96.43 |
| CDY42097 | Canola | nucleus | 71.39 | 94.58 |
| CDY19185 | Canola | nucleus | 85.55 | 85.92 |
| CDY26204 | Canola | nucleus | 79.85 | 85.87 |
| CDY26205 | Canola | nucleus | 85.69 | 85.07 |
| AT1G17920.1 | Thale cress | nucleus | 83.5 | 83.26 |
| Os06t0208100-00 | Rice | nucleus | 13.87 | 73.64 |
| CDX68229 | Canola | nucleus | 69.05 | 67.28 |
| CDY11109 | Canola | nucleus | 69.49 | 67.04 |
| CDX72984 | Canola | nucleus | 69.49 | 66.57 |
| CDX96471 | Canola | nucleus | 69.49 | 66.3 |
| KRH09477 | Soybean | nucleus | 65.4 | 62.4 |
| VIT_17s0053g00780.t01 | Wine grape | nucleus | 64.23 | 61.97 |
| KRH38939 | Soybean | nucleus | 65.26 | 61.91 |
| Solyc03g098200.2.1 | Tomato | nucleus | 61.02 | 57.98 |
| PGSC0003DMT400069312 | Potato | nucleus | 60.44 | 57.9 |
| KRH60596 | Soybean | nucleus | 59.85 | 57.5 |
| Solyc06g072310.2.1 | Tomato | nucleus | 59.85 | 57.18 |
| KRH41898 | Soybean | nucleus | 59.42 | 56.45 |
| Os06t0207966-00 | Rice | plastid | 21.02 | 54.75 |
| GSMUA_Achr10P... | Banana | nucleus | 56.64 | 54.57 |
| Zm00001d018225_P001 | Maize | nucleus | 54.74 | 54.19 |
| GSMUA_Achr6P05990_001 | Banana | nucleus | 47.59 | 54.06 |
| TraesCS6D01G304300.1 | Wheat | nucleus | 53.72 | 53.72 |
| Zm00001d052133_P001 | Maize | nucleus | 54.45 | 53.44 |
| TraesCS6A01G324500.1 | Wheat | nucleus | 53.43 | 53.43 |
| EES05874 | Sorghum | nucleus | 54.89 | 53.18 |
| TraesCS6B01G354900.3 | Wheat | nucleus | 53.72 | 52.8 |
| GSMUA_Achr2P15140_001 | Banana | nucleus | 55.77 | 51.69 |
| Zm00001d037140_P004 | Maize | nucleus | 51.68 | 51.53 |
| GSMUA_Achr7P11310_001 | Banana | nucleus | 55.04 | 51.22 |
| Zm00001d044973_P001 | Maize | nucleus | 51.24 | 50.94 |
| EER89393 | Sorghum | nucleus | 51.82 | 50.71 |
| GSMUA_Achr10P... | Banana | nucleus | 49.63 | 49.85 |
| TraesCS7A01G167900.1 | Wheat | nucleus | 48.76 | 46.07 |
| TraesCS7B01G072700.1 | Wheat | nucleus | 48.61 | 45.62 |
| TraesCS7D01G168700.1 | Wheat | nucleus | 48.61 | 45.49 |
| CDY21319 | Canola | nucleus | 47.01 | 44.97 |
| CDX90879 | Canola | nucleus | 46.86 | 44.83 |
| CDY27417 | Canola | nucleus | 46.72 | 44.82 |
| CDX98703 | Canola | nucleus | 45.4 | 44.75 |
| CDX94054 | Canola | nucleus | 45.26 | 44.6 |
| CDY16639 | Canola | nucleus | 47.3 | 44.2 |
| CDX76399 | Canola | nucleus | 46.13 | 44.2 |
| CDX94586 | Canola | nucleus | 47.15 | 44.13 |
| CDY66622 | Canola | nucleus | 47.01 | 44.05 |
| CDY06167 | Canola | nucleus | 45.69 | 43.47 |
| CDX79091 | Canola | nucleus | 46.72 | 42.9 |
| CDY10041 | Canola | nucleus | 45.4 | 41.63 |
| CDY18903 | Canola | nucleus | 42.04 | 40.85 |
| CDX74762 | Canola | nucleus | 42.04 | 40.68 |
| CDY31916 | Canola | nucleus | 38.98 | 39.67 |
| CDY00515 | Canola | nucleus | 38.69 | 39.38 |
| CDY51143 | Canola | nucleus | 45.26 | 39.24 |
| CDY07201 | Canola | nucleus | 44.96 | 39.09 |
| CDX91894 | Canola | nucleus | 44.96 | 38.79 |
| CDY71572 | Canola | nucleus | 22.19 | 38.68 |
| CDX67855 | Canola | nucleus | 43.94 | 38.59 |
| CDX74347 | Canola | nucleus | 44.67 | 38.59 |
| CDY49515 | Canola | plasma membrane | 45.55 | 38.47 |
| CDY45684 | Canola | nucleus | 43.8 | 38.27 |
| CDY62389 | Canola | cytosol | 27.15 | 38.04 |
| CDX85461 | Canola | cytosol | 39.12 | 38.01 |
| CDY23096 | Canola | nucleus | 7.3 | 37.88 |
| CDY46842 | Canola | nucleus | 45.69 | 37.71 |
| CDX76559 | Canola | nucleus | 39.42 | 36.78 |
| CDY48272 | Canola | nucleus | 37.52 | 36.51 |
| CDY12213 | Canola | nucleus | 37.52 | 36.1 |
| CDY53691 | Canola | nucleus | 37.37 | 36.06 |
| CDY08866 | Canola | nucleus | 38.69 | 36.01 |
| CDY02713 | Canola | nucleus | 38.83 | 35.99 |
| CDY67945 | Canola | nucleus | 35.91 | 35.7 |
| CDY43137 | Canola | nucleus | 35.77 | 35.56 |
| CDY42301 | Canola | nucleus | 35.62 | 35.36 |
| CDY33492 | Canola | nucleus | 40.88 | 35.18 |
| CDX77711 | Canola | nucleus | 41.75 | 34.75 |
| CDY16938 | Canola | nucleus | 33.43 | 34.7 |
| CDY30748 | Canola | endoplasmic reticulum | 29.64 | 34.58 |
| CDY69499 | Canola | cytosol | 15.33 | 34.54 |
| CDY19129 | Canola | nucleus | 36.64 | 34.53 |
| CDY49937 | Canola | nucleus | 34.74 | 34.29 |
| CDY44946 | Canola | nucleus | 32.41 | 34.26 |
| CDY15339 | Canola | nucleus | 36.5 | 34.2 |
| CDY21211 | Canola | nucleus | 34.6 | 34.15 |
| CDY43458 | Canola | nucleus | 40.15 | 33.87 |
| CDY03177 | Canola | nucleus | 40.44 | 33.54 |
| CDX89415 | Canola | cytosol, mitochondrion | 8.61 | 33.15 |
| CDX67929 | Canola | nucleus | 36.79 | 32.18 |
| CDX79408 | Canola | nucleus | 36.64 | 32.18 |
| CDY39874 | Canola | plasma membrane | 7.88 | 28.12 |
| CDX89416 | Canola | nucleus | 25.99 | 27.43 |
| CDX94443 | Canola | cytosol | 24.23 | 26.43 |
| TraesCSU01G150000.1 | Wheat | nucleus | 8.18 | 25.69 |
| TraesCSU01G244000.1 | Wheat | nucleus | 6.72 | 22.33 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | Gene3D:3.30.530.20 | GO:A0A078D6A8 | EnsemblPlants:CDX83884 | ProteinID:CDX83884 |
| ProteinID:CDX83884.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00139656001 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 |
| InterPro:IPR002913 | InterPro:IPR023393 | PFAM:PF00046 | PFAM:PF01852 | ScanProsite:PS00027 | PFscan:PS50071 |
| PFscan:PS50848 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF490 | SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 |
| SUPFAM:SSF55961 | InterPro:START-like_dom_sf | InterPro:START_lipid-bd_dom | UniParc:UPI0004EE6834 | SEG:seg | : |
Description
BnaC08g17610D
Coordinates
chrLK031834:+:975527..978191
Molecular Weight (calculated)
76105.1 Da
IEP (calculated)
6.988
GRAVY (calculated)
-0.311
Length
685 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFLGDSSET DKKTMKKKRF HRHTPHQIQR LESAFNECQH PDEKQRMQLS RELGLAPRQI KFWFQNRRTQ KKAQHERADN CALKEENDRI RCENIAIKEA
101: LKHTICPTCG DAPSHEDSYF DEQKLRIENA HLREELERVS SIAAKFMGRP LSHLPPLLNQ MPFHGGPSLD FDLIPGSCSS MAAPTLPSQP NLVLSDIDKS
201: VMTNIAVTAM EELIRLTQTN EPLWIKNDGA RDVLNLGSYE NMFPRASSRG GKNHNVRVEA SRSSGVVFIN AMTLVDMLMD SVKSAELFPS VVASSKTLAV
301: VSSGLRGNHG EALHLMLEEL QMLSPLVPTR EFSVLRYCQQ IEHGTWAIVN VSYELPQFIS SSRPYRLPSG CLIQDMSNGY CKVTWVEHIE ISEQEPIHEM
401: FKDRVREGLA FGAERWIATL QRMCERFTAL HEPATSSVIP SPEGKRSVMK LAQRMVNNFC LSVGTSNNTR SSTVVSGMNE FGIRVTSYKS QHEPNGMVLC
501: AATSFWLPVS PLIVFNFLKD ERTRPQWDVL LNGSSVQEVA HIANGSHPGN CISILRGFNA SSSQNNMLIL QESCVDSSGS LVVYTPLDLP ALNMAMSGQD
601: TSYIPILPSG FAVSPDGSRN DQIPELKVEG RGSGGGGSLI TVGFQIMVSS LQSGKLNMES METVNNLISS TVHHIKTTLN CPSTA
101: LKHTICPTCG DAPSHEDSYF DEQKLRIENA HLREELERVS SIAAKFMGRP LSHLPPLLNQ MPFHGGPSLD FDLIPGSCSS MAAPTLPSQP NLVLSDIDKS
201: VMTNIAVTAM EELIRLTQTN EPLWIKNDGA RDVLNLGSYE NMFPRASSRG GKNHNVRVEA SRSSGVVFIN AMTLVDMLMD SVKSAELFPS VVASSKTLAV
301: VSSGLRGNHG EALHLMLEEL QMLSPLVPTR EFSVLRYCQQ IEHGTWAIVN VSYELPQFIS SSRPYRLPSG CLIQDMSNGY CKVTWVEHIE ISEQEPIHEM
401: FKDRVREGLA FGAERWIATL QRMCERFTAL HEPATSSVIP SPEGKRSVMK LAQRMVNNFC LSVGTSNNTR SSTVVSGMNE FGIRVTSYKS QHEPNGMVLC
501: AATSFWLPVS PLIVFNFLKD ERTRPQWDVL LNGSSVQEVA HIANGSHPGN CISILRGFNA SSSQNNMLIL QESCVDSSGS LVVYTPLDLP ALNMAMSGQD
601: TSYIPILPSG FAVSPDGSRN DQIPELKVEG RGSGGGGSLI TVGFQIMVSS LQSGKLNMES METVNNLISS TVHHIKTTLN CPSTA
001: MEFLGDSQNH DSSETEKKNK KKKRFHRHTP HQIQRLESTF NECQHPDEKQ RNQLSRELGL APRQIKFWFQ NRRTQKKAQH ERADNCALKE ENDKIRCENI
101: AIREAIKHAI CPSCGDSPVN EDSYFDEQKL RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS SMSVPSLPSQ
201: PNLVLSEMDK SLMTNIAVTA MEELLRLLQT NEPLWIKTDG CRDVLNLENY ENMFTRSSTS GGKKNNLGME ASRSSGVVFT NAITLVDMLM NSVKLTELFP
301: SIVASSKTLA VISSGLRGNH GDALHLMIEE LQVLSPLVTT REFCVLRYCQ QIEHGTWAIV NVSYEFPQFI SQSRSYRFPS GCLIQDMSNG YSKVTWVEHG
401: EFEEQEPIHE MFKDIVHKGL AFGAERWIAT LQRMCERFTN LLEPATSSLD LGGVIPSPEG KRSIMRLAHR MVSNFCLSVG TSNNTRSTVV SGLDEFGIRV
501: TSHKSRHEPN GMVLCAATSF WLPISPQNVF NFLKDERTRP QWDVLSNGNS VQEVAHITNG SNPGNCISVL RGFNASSSQN NMLILQESCI DSSSAALVIY
601: TPVDLPALNI AMSGQDTSYI PILPSGFAIS PDGSSKGGGS LITVGFQIMV SGLQPAKLNM ESMETVNNLI NTTVHQIKTT LNCPSTA
101: AIREAIKHAI CPSCGDSPVN EDSYFDEQKL RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS SMSVPSLPSQ
201: PNLVLSEMDK SLMTNIAVTA MEELLRLLQT NEPLWIKTDG CRDVLNLENY ENMFTRSSTS GGKKNNLGME ASRSSGVVFT NAITLVDMLM NSVKLTELFP
301: SIVASSKTLA VISSGLRGNH GDALHLMIEE LQVLSPLVTT REFCVLRYCQ QIEHGTWAIV NVSYEFPQFI SQSRSYRFPS GCLIQDMSNG YSKVTWVEHG
401: EFEEQEPIHE MFKDIVHKGL AFGAERWIAT LQRMCERFTN LLEPATSSLD LGGVIPSPEG KRSIMRLAHR MVSNFCLSVG TSNNTRSTVV SGLDEFGIRV
501: TSHKSRHEPN GMVLCAATSF WLPISPQNVF NFLKDERTRP QWDVLSNGNS VQEVAHITNG SNPGNCISVL RGFNASSSQN NMLILQESCI DSSSAALVIY
601: TPVDLPALNI AMSGQDTSYI PILPSGFAIS PDGSSKGGGS LITVGFQIMV SGLQPAKLNM ESMETVNNLI NTTVHQIKTT LNCPSTA
Arabidopsis Description
HDG12Uncharacterized protein At1g17920 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUW2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.