Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH60596 | Soybean | nucleus | 94.31 | 95.37 |
| Os06t0208100-00 | Rice | nucleus | 14.84 | 82.95 |
| KRH38939 | Soybean | nucleus | 80.72 | 80.61 |
| KRH09477 | Soybean | nucleus | 80.03 | 80.36 |
| VIT_17s0053g00780.t01 | Wine grape | nucleus | 75.45 | 76.62 |
| Solyc03g098200.2.1 | Tomato | nucleus | 71.01 | 71.01 |
| PGSC0003DMT400069312 | Potato | nucleus | 67.55 | 68.11 |
| Solyc06g072310.2.1 | Tomato | nucleus | 67.41 | 67.78 |
| GSMUA_Achr10P... | Banana | nucleus | 62.83 | 63.71 |
| AT1G73360.1 | Thale cress | nucleus | 62.97 | 62.88 |
| TraesCS6A01G324500.1 | Wheat | nucleus | 59.08 | 62.19 |
| TraesCS6D01G304300.1 | Wheat | nucleus | 58.95 | 62.04 |
| Zm00001d018225_P001 | Maize | nucleus | 59.36 | 61.85 |
| CDX72984 | Canola | nucleus | 61.3 | 61.82 |
| GSMUA_Achr6P05990_001 | Banana | nucleus | 51.59 | 61.69 |
| Zm00001d052133_P001 | Maize | nucleus | 59.64 | 61.6 |
| CDX68229 | Canola | nucleus | 60.06 | 61.59 |
| Bra015996.1-P | Field mustard | nucleus | 61.16 | 61.51 |
| AT1G17920.1 | Thale cress | nucleus | 58.53 | 61.43 |
| CDX96471 | Canola | nucleus | 61.16 | 61.42 |
| EES05874 | Sorghum | nucleus | 60.06 | 61.24 |
| Bra003846.1-P | Field mustard | nucleus | 59.78 | 61.13 |
| CDX96744 | Canola | nucleus | 56.73 | 60.77 |
| GSMUA_Achr2P15140_001 | Banana | nucleus | 62.27 | 60.76 |
| CDY11109 | Canola | nucleus | 59.78 | 60.7 |
| TraesCS6B01G354900.3 | Wheat | nucleus | 58.67 | 60.69 |
| GSMUA_Achr7P11310_001 | Banana | nucleus | 61.72 | 60.46 |
| CDY26204 | Canola | nucleus | 53.26 | 60.28 |
| Zm00001d044973_P001 | Maize | nucleus | 57.56 | 60.23 |
| Os06t0207966-00 | Rice | plastid | 21.91 | 60.08 |
| Zm00001d037140_P004 | Maize | nucleus | 57.0 | 59.83 |
| Bra016578.1-P | Field mustard | nucleus | 56.73 | 59.8 |
| CDY19185 | Canola | nucleus | 56.31 | 59.53 |
| CDX83884 | Canola | nucleus | 56.45 | 59.42 |
| EER89393 | Sorghum | nucleus | 57.14 | 58.86 |
| CDY26205 | Canola | nucleus | 56.31 | 58.84 |
| Bra025938.1-P | Field mustard | nucleus | 56.59 | 58.79 |
| CDY42097 | Canola | nucleus | 41.33 | 57.64 |
| GSMUA_Achr10P... | Banana | nucleus | 54.51 | 57.62 |
| KRH13175 | Soybean | cytosol | 12.48 | 50.85 |
| TraesCS7B01G072700.1 | Wheat | nucleus | 50.9 | 50.27 |
| TraesCS7A01G167900.1 | Wheat | nucleus | 50.49 | 50.21 |
| TraesCS7D01G168700.1 | Wheat | nucleus | 50.9 | 50.14 |
| KRH56105 | Soybean | nucleus | 49.51 | 48.97 |
| KRH77881 | Soybean | nucleus | 47.71 | 47.06 |
| KRH25398 | Soybean | plastid | 49.65 | 47.04 |
| KRH27601 | Soybean | nucleus | 47.16 | 46.45 |
| KRH26803 | Soybean | nucleus | 49.51 | 45.71 |
| KRH22554 | Soybean | nucleus | 49.51 | 45.71 |
| KRH74360 | Soybean | nucleus | 49.65 | 45.37 |
| KRH11810 | Soybean | nucleus | 44.52 | 45.02 |
| KRH39579 | Soybean | nucleus | 49.79 | 44.88 |
| KRH36827 | Soybean | nucleus | 43.83 | 44.57 |
| KRG91238 | Soybean | nucleus | 43.55 | 42.95 |
| KRH35356 | Soybean | nucleus | 44.8 | 42.22 |
| KRH40539 | Soybean | nucleus | 47.85 | 42.07 |
| KRH48236 | Soybean | nucleus | 48.13 | 41.86 |
| KRH35579 | Soybean | nucleus | 45.08 | 41.77 |
| KRG91457 | Soybean | nucleus | 44.94 | 41.7 |
| KRH00641 | Soybean | nucleus | 47.3 | 41.48 |
| KRH65144 | Soybean | nucleus | 47.71 | 41.15 |
| KRH38560 | Soybean | nucleus | 41.47 | 38.53 |
| KRH47277 | Soybean | nucleus | 39.94 | 38.35 |
| KRH23432 | Soybean | plastid | 40.36 | 38.19 |
| KRH36826 | Soybean | nucleus | 37.73 | 38.15 |
| KRH44348 | Soybean | nucleus | 39.53 | 38.1 |
| KRH09884 | Soybean | plastid | 39.67 | 38.08 |
| KRH09109 | Soybean | plastid | 40.92 | 38.06 |
| KRH42428 | Soybean | nucleus | 38.56 | 36.72 |
| KRH42429 | Soybean | cytosol | 32.73 | 32.33 |
| KRH22254 | Soybean | cytosol | 23.16 | 31.21 |
| KRH27078 | Soybean | extracellular, golgi, peroxisome | 13.31 | 29.09 |
| TraesCSU01G150000.1 | Wheat | nucleus | 8.74 | 28.9 |
| Bra007562.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 11.1 | 27.97 |
| TraesCSU01G244000.1 | Wheat | nucleus | 7.35 | 25.73 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100796808 | MapMan:15.5.3.3 | Gene3D:3.30.530.20 | EMBL:ACUP02004781 | EnsemblPlantsGene:GLYMA_08G057400 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008289 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS |
| InterPro:Homeobox_dom | UniProt:I1KQN6 | InterPro:IPR001356 | InterPro:IPR002913 | InterPro:IPR023393 | EnsemblPlants:KRH41898 |
| ProteinID:KRH41898 | ProteinID:KRH41898.1 | PFAM:PF00046 | PFAM:PF01852 | ScanProsite:PS00027 | PFscan:PS50071 |
| PFscan:PS50848 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF236 | SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 |
| SUPFAM:SSF55961 | InterPro:START-like_dom_sf | InterPro:START_lipid-bd_dom | UniParc:UPI0002338262 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr8:+:4411993..4416715
Molecular Weight (calculated)
80102.4 Da
IEP (calculated)
6.646
GRAVY (calculated)
-0.365
Length
721 amino acids
Sequence
(BLAST)
(BLAST)
001: MEYGSGGGGS QSPGEQDGSD SQERRKRYHR HTANQIQRLE SMFKECPHPD EKQRLQLSRE LGLAPRQIKF WFQNRRTQMK AQHERADNCA LRADNDKIRC
101: ENIAIREALK NVICPSCGAP PLNDDCYFDD QKLRLENAHL KEELDRVSSI AAKYIGRPIS QLPPVQPIHI SSLDLSMASY GNQGMVGPAP SSLNLDLLPA
201: AGTSSSSMPY HPPCLSDMDK SLMSDIASNA MEEFLRLVQT NEPLWLKSNV DARDVLSCDA YERMFHKPNT RPKNPNVRIE ASRDSGVVLM NTLALVDMFM
301: DPNKWIQLFP TIVSVARTIQ VISSGMMGSC SGSLQLMYQE LQVLSPLVST REFYFLRYCQ QIEQGTWAVM DVSYDFPQDS HYAPQFRSHR CPSGCLIQDM
401: PDGHSKITWV EHVEIEDKTL PHRLYRNLIY SGMAFGAERW LTTLQRMCER LTYLMATSNP TRDNLGGVIS SPEGKRSMMK LAQRMVTNFC ANISTSSGHR
501: WTTLSGLNEI VVRVTVHKSS DPGQPNGVVL SAATTIWLPT PPHAVFNFFK DENKRPQWDV LSNGNAVQEV ANIANGLHPG NSISVLRAFN NSTQNMLILQ
601: ESCIDSYGSF VVYCPVDLPS INLAMSGEDP SYIPLLPNGF TILPDGQPDQ EGDDGASTSS NNANRNIVRS GGSLVTIAFQ ILVSSLPSAK LNMESVTTVN
701: NLIGSTVQQI KSSLSCPTLP S
101: ENIAIREALK NVICPSCGAP PLNDDCYFDD QKLRLENAHL KEELDRVSSI AAKYIGRPIS QLPPVQPIHI SSLDLSMASY GNQGMVGPAP SSLNLDLLPA
201: AGTSSSSMPY HPPCLSDMDK SLMSDIASNA MEEFLRLVQT NEPLWLKSNV DARDVLSCDA YERMFHKPNT RPKNPNVRIE ASRDSGVVLM NTLALVDMFM
301: DPNKWIQLFP TIVSVARTIQ VISSGMMGSC SGSLQLMYQE LQVLSPLVST REFYFLRYCQ QIEQGTWAVM DVSYDFPQDS HYAPQFRSHR CPSGCLIQDM
401: PDGHSKITWV EHVEIEDKTL PHRLYRNLIY SGMAFGAERW LTTLQRMCER LTYLMATSNP TRDNLGGVIS SPEGKRSMMK LAQRMVTNFC ANISTSSGHR
501: WTTLSGLNEI VVRVTVHKSS DPGQPNGVVL SAATTIWLPT PPHAVFNFFK DENKRPQWDV LSNGNAVQEV ANIANGLHPG NSISVLRAFN NSTQNMLILQ
601: ESCIDSYGSF VVYCPVDLPS INLAMSGEDP SYIPLLPNGF TILPDGQPDQ EGDDGASTSS NNANRNIVRS GGSLVTIAFQ ILVSSLPSAK LNMESVTTVN
701: NLIGSTVQQI KSSLSCPTLP S
001: MEFLGDSQNH DSSETEKKNK KKKRFHRHTP HQIQRLESTF NECQHPDEKQ RNQLSRELGL APRQIKFWFQ NRRTQKKAQH ERADNCALKE ENDKIRCENI
101: AIREAIKHAI CPSCGDSPVN EDSYFDEQKL RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS SMSVPSLPSQ
201: PNLVLSEMDK SLMTNIAVTA MEELLRLLQT NEPLWIKTDG CRDVLNLENY ENMFTRSSTS GGKKNNLGME ASRSSGVVFT NAITLVDMLM NSVKLTELFP
301: SIVASSKTLA VISSGLRGNH GDALHLMIEE LQVLSPLVTT REFCVLRYCQ QIEHGTWAIV NVSYEFPQFI SQSRSYRFPS GCLIQDMSNG YSKVTWVEHG
401: EFEEQEPIHE MFKDIVHKGL AFGAERWIAT LQRMCERFTN LLEPATSSLD LGGVIPSPEG KRSIMRLAHR MVSNFCLSVG TSNNTRSTVV SGLDEFGIRV
501: TSHKSRHEPN GMVLCAATSF WLPISPQNVF NFLKDERTRP QWDVLSNGNS VQEVAHITNG SNPGNCISVL RGFNASSSQN NMLILQESCI DSSSAALVIY
601: TPVDLPALNI AMSGQDTSYI PILPSGFAIS PDGSSKGGGS LITVGFQIMV SGLQPAKLNM ESMETVNNLI NTTVHQIKTT LNCPSTA
101: AIREAIKHAI CPSCGDSPVN EDSYFDEQKL RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS SMSVPSLPSQ
201: PNLVLSEMDK SLMTNIAVTA MEELLRLLQT NEPLWIKTDG CRDVLNLENY ENMFTRSSTS GGKKNNLGME ASRSSGVVFT NAITLVDMLM NSVKLTELFP
301: SIVASSKTLA VISSGLRGNH GDALHLMIEE LQVLSPLVTT REFCVLRYCQ QIEHGTWAIV NVSYEFPQFI SQSRSYRFPS GCLIQDMSNG YSKVTWVEHG
401: EFEEQEPIHE MFKDIVHKGL AFGAERWIAT LQRMCERFTN LLEPATSSLD LGGVIPSPEG KRSIMRLAHR MVSNFCLSVG TSNNTRSTVV SGLDEFGIRV
501: TSHKSRHEPN GMVLCAATSF WLPISPQNVF NFLKDERTRP QWDVLSNGNS VQEVAHITNG SNPGNCISVL RGFNASSSQN NMLILQESCI DSSSAALVIY
601: TPVDLPALNI AMSGQDTSYI PILPSGFAIS PDGSSKGGGS LITVGFQIMV SGLQPAKLNM ESMETVNNLI NTTVHQIKTT LNCPSTA
Arabidopsis Description
HDG12Uncharacterized protein At1g17920 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUW2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.