Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G168700.1 | Wheat | nucleus | 98.21 | 97.27 |
| TraesCS7B01G072700.1 | Wheat | nucleus | 95.17 | 94.52 |
| Os06t0208100-00 | Rice | nucleus | 15.86 | 89.15 |
| HORVU7Hr1G035230.2 | Barley | nucleus | 77.24 | 75.27 |
| Zm00001d044973_P001 | Maize | nucleus | 65.93 | 69.38 |
| Zm00001d037140_P004 | Maize | nucleus | 65.66 | 69.29 |
| EER89393 | Sorghum | nucleus | 66.34 | 68.71 |
| TraesCS6A01G324500.1 | Wheat | nucleus | 63.59 | 67.3 |
| Os06t0207966-00 | Rice | plastid | 22.76 | 62.74 |
| GSMUA_Achr10P... | Banana | nucleus | 53.24 | 54.29 |
| KRH09477 | Soybean | nucleus | 53.24 | 53.76 |
| VIT_17s0053g00780.t01 | Wine grape | nucleus | 52.41 | 53.52 |
| KRH38939 | Soybean | nucleus | 53.24 | 53.46 |
| GSMUA_Achr6P05990_001 | Banana | nucleus | 43.86 | 52.74 |
| GSMUA_Achr2P15140_001 | Banana | nucleus | 52.69 | 51.69 |
| Solyc03g098200.2.1 | Tomato | nucleus | 51.03 | 51.32 |
| GSMUA_Achr7P11310_001 | Banana | nucleus | 51.86 | 51.09 |
| KRH60596 | Soybean | nucleus | 49.79 | 50.63 |
| KRH41898 | Soybean | nucleus | 50.21 | 50.49 |
| CDX96744 | Canola | nucleus | 46.48 | 50.07 |
| PGSC0003DMT400069312 | Potato | nucleus | 49.38 | 50.07 |
| Solyc06g072310.2.1 | Tomato | nucleus | 48.97 | 49.51 |
| Bra016578.1-P | Field mustard | nucleus | 46.48 | 49.27 |
| GSMUA_Achr10P... | Banana | nucleus | 45.93 | 48.83 |
| CDX83884 | Canola | nucleus | 46.07 | 48.76 |
| AT1G17920.1 | Thale cress | nucleus | 45.93 | 48.47 |
| CDY42097 | Canola | nucleus | 34.21 | 47.97 |
| CDY26204 | Canola | nucleus | 42.07 | 47.88 |
| CDY19185 | Canola | nucleus | 44.83 | 47.65 |
| CDX68229 | Canola | nucleus | 45.93 | 47.37 |
| CDY26205 | Canola | nucleus | 44.83 | 47.1 |
| Bra003846.1-P | Field mustard | nucleus | 45.79 | 47.09 |
| TraesCS7A01G168100.1 | Wheat | nucleus | 9.52 | 46.94 |
| Bra025938.1-P | Field mustard | nucleus | 44.55 | 46.54 |
| AT1G73360.1 | Thale cress | nucleus | 46.21 | 46.4 |
| CDY11109 | Canola | nucleus | 45.38 | 46.34 |
| TraesCS7A01G168000.1 | Wheat | nucleus | 8.69 | 46.32 |
| CDX96471 | Canola | nucleus | 45.66 | 46.1 |
| Bra015996.1-P | Field mustard | nucleus | 45.38 | 45.89 |
| CDX72984 | Canola | nucleus | 45.1 | 45.73 |
| VIT_04s0079g00480.t01 | Wine grape | nucleus | 43.72 | 44.4 |
| TraesCS7A01G308400.1 | Wheat | nucleus | 43.45 | 39.57 |
| Solyc09g057530.1.1 | Tomato | cytosol | 7.45 | 39.42 |
| TraesCS2A01G474000.1 | Wheat | nucleus | 41.79 | 39.0 |
| KRH11810 | Soybean | nucleus | 38.07 | 38.71 |
| KRH36827 | Soybean | nucleus | 37.66 | 38.5 |
| Solyc07g026570.1.1 | Tomato | nucleus | 7.31 | 37.59 |
| TraesCS6A01G255800.1 | Wheat | nucleus | 41.66 | 37.56 |
| CDY42301 | Canola | nucleus | 35.17 | 36.96 |
| Bra032003.1-P | Field mustard | nucleus | 35.03 | 36.87 |
| Bra020066.1-P | Field mustard | nucleus | 34.62 | 36.8 |
| AT3G03260.1 | Thale cress | nucleus | 35.45 | 36.77 |
| CDY43137 | Canola | nucleus | 34.76 | 36.57 |
| CDY67945 | Canola | nucleus | 34.76 | 36.57 |
| CDY44946 | Canola | nucleus | 31.59 | 35.34 |
| CDX85461 | Canola | cytosol | 34.34 | 35.32 |
| Bra023611.1-P | Field mustard | nucleus | 34.21 | 35.18 |
| Solyc09g066070.2.1 | Tomato | cytosol | 20.83 | 35.03 |
| AT1G34650.1 | Thale cress | nucleus | 34.21 | 35.03 |
| CDY53691 | Canola | nucleus | 33.79 | 34.51 |
| Bra003213.1-P | Field mustard | nucleus | 33.66 | 34.37 |
| CDY62389 | Canola | cytosol | 23.17 | 34.36 |
| CDY49937 | Canola | nucleus | 32.83 | 34.29 |
| TraesCS5A01G314400.2 | Wheat | nucleus | 40.14 | 34.28 |
| AT5G17320.1 | Thale cress | nucleus | 33.79 | 34.12 |
| CDY21211 | Canola | nucleus | 32.55 | 34.01 |
| Bra021363.1-P | Field mustard | nucleus | 34.07 | 33.98 |
| PGSC0003DMT400034503 | Potato | cytosol, nucleus | 31.86 | 33.92 |
| PGSC0003DMT400085057 | Potato | cytosol | 22.21 | 33.68 |
| Solyc11g011940.1.1 | Tomato | nucleus | 33.24 | 33.61 |
| KRH36826 | Soybean | nucleus | 32.69 | 33.24 |
| Bra008562.1-P | Field mustard | cytosol, nucleus, plastid | 33.1 | 33.2 |
| Solyc09g066030.1.1 | Tomato | nucleus | 33.1 | 33.2 |
| Solyc10g018030.1.1 | Tomato | cytosol | 18.9 | 33.17 |
| CDY02713 | Canola | nucleus | 33.79 | 33.15 |
| Solyc10g018020.1.1 | Tomato | extracellular | 15.31 | 33.04 |
| Solyc09g060140.2.1 | Tomato | mitochondrion | 16.69 | 32.88 |
| TraesCS1A01G193400.1 | Wheat | nucleus, plastid | 39.59 | 32.88 |
| PGSC0003DMT400051268 | Potato | cytosol | 22.34 | 32.46 |
| TraesCS2A01G401200.3 | Wheat | nucleus | 35.72 | 32.38 |
| CDY69499 | Canola | cytosol | 13.52 | 32.24 |
| Solyc09g057540.2.1 | Tomato | cytosol | 22.07 | 32.19 |
| CDY16938 | Canola | nucleus | 28.97 | 31.82 |
| Solyc09g060170.1.1 | Tomato | cytosol | 15.03 | 31.69 |
| TraesCS3A01G305300.1 | Wheat | nucleus | 33.24 | 31.67 |
| PGSC0003DMT400051266 | Potato | cytosol | 16.97 | 31.62 |
| Solyc08g062510.2.1 | Tomato | nucleus | 28.41 | 31.55 |
| Solyc09g066050.2.1 | Tomato | cytosol | 24.0 | 31.46 |
| Solyc04g025490.1.1 | Tomato | cytosol | 10.48 | 31.41 |
| KRH42428 | Soybean | nucleus | 32.55 | 31.18 |
| Solyc10g018000.1.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 29.66 | 30.76 |
| Solyc07g026560.1.1 | Tomato | cytosol | 20.0 | 30.66 |
| Solyc09g060130.1.1 | Tomato | cytosol | 18.76 | 30.63 |
| PGSC0003DMT400038820 | Potato | extracellular | 15.17 | 30.22 |
| Solyc05g015030.1.1 | Tomato | cytosol | 19.72 | 30.17 |
| Solyc07g037910.1.1 | Tomato | cytosol | 8.55 | 29.38 |
| PGSC0003DMT400036411 | Potato | nucleus | 21.24 | 29.33 |
| TraesCS7A01G215300.1 | Wheat | nucleus | 6.9 | 29.24 |
| Solyc11g022420.1.1 | Tomato | cytosol | 19.03 | 28.81 |
| Solyc08g062520.2.1 | Tomato | cytosol | 20.0 | 28.38 |
| TraesCS4A01G072000.1 | Wheat | nucleus | 8.69 | 28.25 |
| Solyc04g025480.1.1 | Tomato | cytosol | 25.38 | 28.09 |
| TraesCS4A01G231300.2 | Wheat | nucleus | 29.24 | 27.46 |
| KRH42429 | Soybean | cytosol | 27.45 | 27.26 |
| TraesCS3A01G325800.1 | Wheat | nucleus | 24.69 | 26.21 |
| TraesCS3A01G119200.1 | Wheat | nucleus | 6.48 | 25.97 |
| TraesCS7A01G215400.1 | Wheat | nucleus | 6.34 | 25.7 |
| TraesCS5A01G330200.1 | Wheat | nucleus | 26.07 | 25.4 |
| Bra007562.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 9.66 | 24.48 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 |
| InterPro:IPR002913 | PFAM:PF00046 | PFAM:PF01852 | ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS50848 |
| PANTHER:PTHR24326 | PANTHER:PTHR24326:SF490 | SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 | SUPFAM:SSF55961 |
| InterPro:START_lipid-bd_dom | EnsemblPlantsGene:TraesCS7A01G167900 | EnsemblPlants:TraesCS7A01G167900.1 | TIGR:cd00086 | TIGR:cd08875 | SEG:seg |
Description
No Description!
Coordinates
chr7A:-:124067724..124070795
Molecular Weight (calculated)
79213.7 Da
IEP (calculated)
6.552
GRAVY (calculated)
-0.336
Length
725 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFGDDQEGG SESNQHQQQQ QNQNQRRKRY HRHTPRQIQT LEAMFKECPH PDEAQRANLS RELGLEARQI KFWFQNRRTQ MKAQHERQDN CFLRQENDKI
101: RCENIAMREA LKNVICPTCG GPPIAEDYFD EQKLRMENAR LKQELDSVAG LTAKYLGRPF TQLPQGTPQM NVSSLDLSMG GVPMGGGHHQ PFGGGLSLDL
201: DLLSGAGLGM PLSDMPTMHL PAPVTEKERP DMAKMATRAM DELIRLTQQG GNVWVKIPGG DGRETIDVQE YDSIYSKPGS SNFRAGDIRV EGSRDSAIVC
301: MSPVNLVEVF MDPSKFMEFF PSIVSHARIT DPLVNGLNRR NESLVMMYEQ LQFMTPAVPT REFSFLRYCR QIDQGMWAIA DVSADMQREA HYGAPPPRSR
401: RLPSGCLIAD MTNGYSKVTW VEHMEIEDKS PIGPLYRDIV QSGAAFGAHR WVAALHRACE RYASSLEVPG VMHGETTGVT AEGRRSMMAL SQRMVSSFCG
501: GMTASPQHQW TTMPGAAGNE VCVRVSMNQG AQPGHPNGVV LGAATSVWLP VPADHVFGFL RDENTRTQWD VLCKENSVQP VSRIPNGPNP GNCITLLRAV
601: SSSQTPQGGQ ATILVLQESC TDASGCSMVV YSPIDIPAAN MMMSGADPSG IPLLPSGFAI WPAGVGGGAS TSAATPMAAG CIVSVAFQIL ISSLPSSKLN
701: AESIATVNNL VSTTVQNIKA ALNCV
101: RCENIAMREA LKNVICPTCG GPPIAEDYFD EQKLRMENAR LKQELDSVAG LTAKYLGRPF TQLPQGTPQM NVSSLDLSMG GVPMGGGHHQ PFGGGLSLDL
201: DLLSGAGLGM PLSDMPTMHL PAPVTEKERP DMAKMATRAM DELIRLTQQG GNVWVKIPGG DGRETIDVQE YDSIYSKPGS SNFRAGDIRV EGSRDSAIVC
301: MSPVNLVEVF MDPSKFMEFF PSIVSHARIT DPLVNGLNRR NESLVMMYEQ LQFMTPAVPT REFSFLRYCR QIDQGMWAIA DVSADMQREA HYGAPPPRSR
401: RLPSGCLIAD MTNGYSKVTW VEHMEIEDKS PIGPLYRDIV QSGAAFGAHR WVAALHRACE RYASSLEVPG VMHGETTGVT AEGRRSMMAL SQRMVSSFCG
501: GMTASPQHQW TTMPGAAGNE VCVRVSMNQG AQPGHPNGVV LGAATSVWLP VPADHVFGFL RDENTRTQWD VLCKENSVQP VSRIPNGPNP GNCITLLRAV
601: SSSQTPQGGQ ATILVLQESC TDASGCSMVV YSPIDIPAAN MMMSGADPSG IPLLPSGFAI WPAGVGGGAS TSAATPMAAG CIVSVAFQIL ISSLPSSKLN
701: AESIATVNNL VSTTVQNIKA ALNCV
001: MEFLGDSQNH DSSETEKKNK KKKRFHRHTP HQIQRLESTF NECQHPDEKQ RNQLSRELGL APRQIKFWFQ NRRTQKKAQH ERADNCALKE ENDKIRCENI
101: AIREAIKHAI CPSCGDSPVN EDSYFDEQKL RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS SMSVPSLPSQ
201: PNLVLSEMDK SLMTNIAVTA MEELLRLLQT NEPLWIKTDG CRDVLNLENY ENMFTRSSTS GGKKNNLGME ASRSSGVVFT NAITLVDMLM NSVKLTELFP
301: SIVASSKTLA VISSGLRGNH GDALHLMIEE LQVLSPLVTT REFCVLRYCQ QIEHGTWAIV NVSYEFPQFI SQSRSYRFPS GCLIQDMSNG YSKVTWVEHG
401: EFEEQEPIHE MFKDIVHKGL AFGAERWIAT LQRMCERFTN LLEPATSSLD LGGVIPSPEG KRSIMRLAHR MVSNFCLSVG TSNNTRSTVV SGLDEFGIRV
501: TSHKSRHEPN GMVLCAATSF WLPISPQNVF NFLKDERTRP QWDVLSNGNS VQEVAHITNG SNPGNCISVL RGFNASSSQN NMLILQESCI DSSSAALVIY
601: TPVDLPALNI AMSGQDTSYI PILPSGFAIS PDGSSKGGGS LITVGFQIMV SGLQPAKLNM ESMETVNNLI NTTVHQIKTT LNCPSTA
101: AIREAIKHAI CPSCGDSPVN EDSYFDEQKL RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS SMSVPSLPSQ
201: PNLVLSEMDK SLMTNIAVTA MEELLRLLQT NEPLWIKTDG CRDVLNLENY ENMFTRSSTS GGKKNNLGME ASRSSGVVFT NAITLVDMLM NSVKLTELFP
301: SIVASSKTLA VISSGLRGNH GDALHLMIEE LQVLSPLVTT REFCVLRYCQ QIEHGTWAIV NVSYEFPQFI SQSRSYRFPS GCLIQDMSNG YSKVTWVEHG
401: EFEEQEPIHE MFKDIVHKGL AFGAERWIAT LQRMCERFTN LLEPATSSLD LGGVIPSPEG KRSIMRLAHR MVSNFCLSVG TSNNTRSTVV SGLDEFGIRV
501: TSHKSRHEPN GMVLCAATSF WLPISPQNVF NFLKDERTRP QWDVLSNGNS VQEVAHITNG SNPGNCISVL RGFNASSSQN NMLILQESCI DSSSAALVIY
601: TPVDLPALNI AMSGQDTSYI PILPSGFAIS PDGSSKGGGS LITVGFQIMV SGLQPAKLNM ESMETVNNLI NTTVHQIKTT LNCPSTA
Arabidopsis Description
HDG12Uncharacterized protein At1g17920 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUW2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.