Factsheet for TraesCS5A01G314400.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G320600.1	Wheat	nucleus	99.53	99.53
TraesCS5B01G315100.2	Wheat	nucleus	98.7	98.59
HORVU5Hr1G080700.2	Barley	nucleus	96.47	96.01
Os09t0526300-00	Rice	nucleus	14.61	94.66
HORVU0Hr1G013510.1	Barley	cytosol	15.43	94.24
EER99222	Sorghum	nucleus	81.51	79.36
Zm00001d021236_P004	Maize	nucleus	80.45	75.64
HORVU7Hr1G036950.2	Barley	cytosol	14.61	67.76
VIT_15s0048g02000.t01	Wine grape	nucleus	58.42	61.16
CDY18903	Canola	nucleus	50.18	60.43
CDX74762	Canola	nucleus	50.18	60.17
KRH40539	Soybean	nucleus	57.83	59.88
KRH00641	Soybean	nucleus	57.48	59.37
PGSC0003DMT400071377	Potato	nucleus	57.24	59.2
Solyc01g091630.2.1	Tomato	nucleus	57.13	59.07
KRH48236	Soybean	nucleus	57.6	58.99
TraesCS6A01G255800.1	Wheat	nucleus	55.83	58.96
KRH65144	Soybean	nucleus	57.48	58.37
CDY51143	Canola	nucleus	53.83	57.85
Bra037355.1-P	Field mustard	nucleus	53.83	57.85
HORVU4Hr1G062510.2	Barley	cytosol	18.85	57.76
Bra004934.1-P	Field mustard	nucleus	53.47	57.76
AT4G00730.1	Thale cress	nucleus	54.3	57.48
CDY07201	Canola	nucleus	53.24	57.36
PGSC0003DMT400019986	Potato	nucleus	54.53	57.23
CDX91894	Canola	nucleus	53.36	57.05
CDX74347	Canola	nucleus	52.77	56.49
CDX67855	Canola	nucleus	51.71	56.28
CDY45684	Canola	nucleus	51.94	56.25
Bra003439.1-P	Field mustard	nucleus	51.83	56.05
AT3G61150.1	Thale cress	nucleus	52.18	54.83
HORVU3Hr1G108430.1	Barley	cytosol	19.91	50.75
TraesCS2A01G401200.3	Wheat	nucleus	44.76	47.5
TraesCS2A01G474000.1	Wheat	nucleus	42.99	46.98
TraesCS7A01G308400.1	Wheat	nucleus	43.35	46.23
TraesCS6A01G324500.1	Wheat	nucleus	37.22	46.13
TraesCS7A01G167900.1	Wheat	nucleus	34.28	40.14
TraesCS7A01G168100.1	Wheat	nucleus	6.95	40.14
TraesCS7A01G168000.1	Wheat	nucleus	6.01	37.5
TraesCS3A01G305300.1	Wheat	nucleus	32.51	36.27
TraesCS7A01G215300.1	Wheat	nucleus	7.18	35.67
TraesCS4A01G072000.1	Wheat	nucleus	8.95	34.08
TraesCS1A01G193400.1	Wheat	nucleus, plastid	34.98	34.02
TraesCS5A01G330200.1	Wheat	nucleus	29.56	33.74
TraesCS4A01G231300.2	Wheat	nucleus	30.15	33.16
TraesCS3A01G119200.1	Wheat	nucleus	6.71	31.49
TraesCS7A01G215400.1	Wheat	nucleus	6.6	31.28
TraesCS3A01G325800.1	Wheat	nucleus	24.03	29.87

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:IPR002913	PFAM:PF00046	PFAM:PF01852	ScanProsite:PS00027	PFscan:PS50071
PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF350	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689
SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	EnsemblPlantsGene:TraesCS5A01G314400	EnsemblPlants:TraesCS5A01G314400.2	TIGR:cd00086	TIGR:cd08875
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5A:-:524906817..524912398

Molecular Weight (calculated)

90380.5 Da

IEP (calculated)

5.937

GRAVY (calculated)

-0.285

Length

849 amino acids

Sequence
(BLAST)

001: MSFGGMFDGA GSGVFSYDAG GGGPGMHNPG RLLAPPPIPR PGAGAGGGGF ASSTGLSLGL TNMEGGGQLG GAFMGSTGSG GDGDSLGRAR EDENDSRSGS
101: DNLDGASADE LDPDNSNPRK KKKRYHRHTP QQIQELEAVF KECPHPDEKQ RMELSRRLNL ESRQVKFWFQ NRRTQMKTQI ERHENALLRQ ENDKLRTENM
201: TIREAMRSPT CGNCGGAAVL GEVSLEEQHL RIENSRLKDE LDRVCALAGK FLGRPVSAIS SPLSLPSSLC SGLDLAVGSN NGFMGMGMQS IPDLMGGGSA
301: AMRLPAGIMG GGLDDGLGGE GVAIDRGALL ELGLAAMEEL VKVTQVDDPL WQPSLDIGLE TLNFDEYRRA FARVLGPSPA GYVSEATREV GIAIINSVDL
401: VNSLMNEARW SEMFPCVVAR ASTMEIISSG MGGTRSGSIQ LMRAELQVLS PLVPIREVTF LRFCKQHADG LWVIVDVSVD GVLRPDSGTG AGPAGYMGCR
501: LLPSGCIVED MQNGYAKVTW VVHAEYDEAA VHELYRPLLR SGQALGARRW LASLQRQCEY HAILCSNPHP NHGDRHEPIS PAGRRCMLRL AQRMADNFCA
601: GVCATAAQKW RRLDEWRVEG AGGRDPAGGE DKVRMMARQS VGAPGEPPGV VLSATTSVRL PGTPPQRVFD YLRDEQRRGE WDILANGEAM QEMDHIAKGQ
701: HHGNAVSLLR PNATSGNQNN MLILQETCTD ASGSLVVYAP VDVQSMHVVM GGGDSAYVSL LPSGFAILPD GHTAPAAATD PSSQGSSPNA HGGSSNNSPG
801: SLVTVAFQIL VNNLPTAKLT VESVDTVSNL LSCTIQKIKS ALQASIISP

Best Arabidopsis Sequence Match ( AT3G61150.1 )
(BLAST)

001: MNFNGFLDDG AGASKLLSDA PYNNHFSFSA VDTMLGSAAI APSQSLPFSS SGLSLGLQTN GEMSRNGEIM ESNVSRKSSR GEDVESRSES DNAEAVSGDD
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST

Arabidopsis Description

HDG1HDG1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5Q4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.