Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67855 | Canola | nucleus | 97.83 | 98.33 |
| Bra003439.1-P | Field mustard | nucleus | 97.7 | 97.58 |
| AT3G61150.1 | Thale cress | nucleus | 89.54 | 86.88 |
| Os09t0526300-00 | Rice | nucleus | 14.29 | 85.5 |
| CDY18903 | Canola | nucleus | 64.92 | 72.2 |
| CDX74762 | Canola | nucleus | 65.05 | 72.03 |
| VIT_15s0048g02000.t01 | Wine grape | nucleus | 69.26 | 66.95 |
| PGSC0003DMT400071377 | Potato | nucleus | 69.52 | 66.38 |
| Solyc01g091630.2.1 | Tomato | nucleus | 69.39 | 66.26 |
| KRH48236 | Soybean | nucleus | 69.26 | 65.5 |
| KRH00641 | Soybean | nucleus | 68.49 | 65.33 |
| KRH40539 | Soybean | nucleus | 68.11 | 65.12 |
| KRH65144 | Soybean | nucleus | 68.75 | 64.47 |
| GSMUA_Achr1P18760_001 | Banana | nucleus | 61.35 | 63.62 |
| CDY07201 | Canola | nucleus | 63.65 | 63.32 |
| CDX74347 | Canola | nucleus | 64.03 | 63.3 |
| CDY51143 | Canola | nucleus | 63.52 | 63.04 |
| CDX91894 | Canola | nucleus | 63.78 | 62.97 |
| PGSC0003DMT400019986 | Potato | nucleus | 64.16 | 62.18 |
| HORVU6Hr1G065300.3 | Barley | nucleus | 59.95 | 58.75 |
| Os02t0674800-01 | Rice | nucleus | 60.2 | 58.71 |
| GSMUA_Achr3P12410_001 | Banana | nucleus | 55.48 | 58.63 |
| TraesCS6D01G237000.1 | Wheat | nucleus | 60.08 | 58.58 |
| TraesCS6A01G255800.1 | Wheat | nucleus | 59.95 | 58.46 |
| TraesCS6B01G269700.1 | Wheat | nucleus | 59.82 | 58.33 |
| Zm00001d040090_P002 | Maize | nucleus | 59.69 | 58.28 |
| HORVU0Hr1G013510.1 | Barley | cytosol | 10.33 | 58.27 |
| EES02604 | Sorghum | nucleus | 60.33 | 58.04 |
| Os04t0569100-01 | Rice | nucleus | 56.51 | 54.96 |
| CDY00515 | Canola | nucleus | 45.54 | 53.05 |
| CDY31916 | Canola | nucleus | 45.41 | 52.9 |
| EER99222 | Sorghum | nucleus | 58.67 | 52.75 |
| CDX90879 | Canola | nucleus | 47.96 | 52.51 |
| CDY21319 | Canola | nucleus | 47.83 | 52.37 |
| TraesCS5D01G320600.1 | Wheat | nucleus | 56.38 | 52.06 |
| HORVU5Hr1G080700.2 | Barley | nucleus | 56.63 | 52.05 |
| TraesCS5A01G314400.2 | Wheat | nucleus | 56.25 | 51.94 |
| TraesCS5B01G315100.2 | Wheat | nucleus | 56.25 | 51.88 |
| CDX76399 | Canola | nucleus | 47.07 | 51.61 |
| CDX98703 | Canola | nucleus | 45.66 | 51.51 |
| KXG26935 | Sorghum | nucleus | 52.68 | 51.5 |
| CDX94054 | Canola | nucleus | 45.54 | 51.37 |
| Zm00001d040091_P001 | Maize | nucleus | 17.09 | 51.34 |
| CDY16639 | Canola | nucleus | 47.96 | 51.3 |
| CDX94586 | Canola | nucleus | 47.83 | 51.23 |
| CDY27417 | Canola | nucleus | 46.17 | 50.7 |
| CDY06167 | Canola | nucleus | 46.3 | 50.42 |
| Zm00001d021236_P004 | Maize | nucleus | 57.78 | 50.17 |
| CDY66622 | Canola | nucleus | 46.43 | 49.79 |
| TraesCS2D01G398600.1 | Wheat | nucleus | 49.11 | 49.11 |
| CDX79091 | Canola | nucleus | 46.56 | 48.93 |
| CDY10041 | Canola | nucleus | 46.56 | 48.86 |
| TraesCS2B01G419200.1 | Wheat | nucleus | 48.72 | 48.66 |
| Zm00001d026088_P002 | Maize | nucleus | 51.02 | 47.96 |
| HORVU2Hr1G095210.1 | Barley | nucleus | 47.7 | 47.95 |
| TraesCS2A01G401200.3 | Wheat | nucleus | 48.72 | 47.75 |
| CDY49515 | Canola | plasma membrane | 47.07 | 45.5 |
| CDX89415 | Canola | cytosol, mitochondrion | 10.2 | 44.94 |
| CDX96744 | Canola | nucleus | 38.39 | 44.73 |
| CDY23096 | Canola | nucleus | 7.53 | 44.7 |
| CDY46842 | Canola | nucleus | 46.81 | 44.22 |
| CDX68229 | Canola | nucleus | 39.41 | 43.95 |
| CDX83884 | Canola | nucleus | 38.27 | 43.8 |
| CDY71572 | Canola | nucleus | 21.81 | 43.51 |
| CDY42097 | Canola | nucleus | 28.57 | 43.33 |
| CDX96471 | Canola | nucleus | 39.67 | 43.31 |
| CDY11109 | Canola | nucleus | 39.16 | 43.24 |
| CDX72984 | Canola | nucleus | 39.16 | 42.94 |
| CDY19185 | Canola | nucleus | 36.99 | 42.52 |
| CDY26204 | Canola | nucleus | 34.06 | 41.92 |
| CDY26205 | Canola | nucleus | 36.73 | 41.74 |
| CDY12213 | Canola | nucleus | 37.88 | 41.71 |
| HORVU4Hr1G062510.2 | Barley | cytosol | 14.67 | 41.52 |
| CDY48272 | Canola | nucleus | 37.24 | 41.48 |
| HORVU7Hr1G036950.2 | Barley | cytosol | 9.57 | 40.98 |
| CDY19129 | Canola | nucleus | 37.63 | 40.58 |
| CDY15339 | Canola | nucleus | 37.5 | 40.22 |
| CDY30748 | Canola | endoplasmic reticulum | 29.72 | 39.69 |
| CDY39874 | Canola | plasma membrane | 9.44 | 38.54 |
| CDX67929 | Canola | nucleus | 37.76 | 37.8 |
| CDX79408 | Canola | nucleus | 37.5 | 37.69 |
| CDY43458 | Canola | nucleus | 36.73 | 35.47 |
| CDY03177 | Canola | nucleus | 36.73 | 34.87 |
| CDX77711 | Canola | nucleus | 36.35 | 34.63 |
| CDY08866 | Canola | nucleus | 32.27 | 34.38 |
| CDY33492 | Canola | nucleus | 34.82 | 34.3 |
| CDX76559 | Canola | nucleus | 31.76 | 33.92 |
| CDX85461 | Canola | cytosol | 30.48 | 33.9 |
| CDX89416 | Canola | nucleus | 28.06 | 33.9 |
| CDY69499 | Canola | cytosol | 13.01 | 33.55 |
| CDY62389 | Canola | cytosol | 20.92 | 33.54 |
| CDY53691 | Canola | nucleus | 30.23 | 33.38 |
| HORVU3Hr1G108430.1 | Barley | cytosol | 14.16 | 33.33 |
| CDY43137 | Canola | nucleus | 28.57 | 32.51 |
| CDY67945 | Canola | nucleus | 28.57 | 32.51 |
| CDY16938 | Canola | nucleus | 27.3 | 32.42 |
| CDX94443 | Canola | cytosol | 25.89 | 32.32 |
| CDY42301 | Canola | nucleus | 28.44 | 32.32 |
| CDY02713 | Canola | nucleus | 30.36 | 32.21 |
| CDY49937 | Canola | nucleus | 27.68 | 31.27 |
| CDY44946 | Canola | nucleus | 25.64 | 31.02 |
| CDY21211 | Canola | nucleus | 27.42 | 30.98 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | GO:A0A078I8F2 | UniProt:A0A078I8F2 | unigene:Bna.5778 | EnsemblPlants:CDY45684 |
| ProteinID:CDY45684 | ProteinID:CDY45684.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00082469001 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 |
| InterPro:IPR002913 | PFAM:PF00046 | PFAM:PF01852 | ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS50848 |
| PANTHER:PTHR24326 | PANTHER:PTHR24326:SF487 | SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 | SUPFAM:SSF55961 |
| InterPro:START_lipid-bd_dom | UniParc:UPI0004EF0BD8 | SEG:seg | : | : | : |
Description
BnaCnng13490DBnaCnng13490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I8F2]
Coordinates
chrLK032633:+:65902..69765
Molecular Weight (calculated)
85894.9 Da
IEP (calculated)
6.815
GRAVY (calculated)
-0.391
Length
784 amino acids
Sequence
(BLAST)
(BLAST)
001: MNFNGYLGDG SSGDRISDVP YSDHVSFSAA ATMPHSRPFS SNGLSLGLQT NGVNGETFET NVTRNKSRGG EDAESRSESD NAEAASGDDL ETGDKPPRKK
101: KRYHRHTAKQ IQDLESVFKE CAHPDEKQRL DLSRKLNLDP RQVKFWFQNR RTQMKTQIER HENALLRQEN DKLRAENMSV REAMRNPMCS NCGGPAVLGE
201: VSMEEQHLRI ENSRLKDELD RVCALTGKFL GRSTSGSHHV PDSSLVLGVG VGSGGGFSLS SPSLPQASPR FEISNGTGLA TVNRQRPVSD FDQRSRYLDL
301: ALAAMEELVK MAQRHEPLWV RSSETGFEML NKEEYDTSFS RVVGPKQDGF VSEASKETGN VIINSLALVE TLMDSERWAE MFPSMISRTS TTEIISSGMG
401: GTRNGALHLM HAELQLLSPL VPVRQVSFLR FCKQHAEGVW AVVDVSIDSI REGSSSSCRR LPSGCLVQDM ANGYSKVTWI EHTEYDETRI HRLYRPLLSC
501: GLAFGAQRWM AALQRQCECL TILMSSTVSP SRSPTPISCN GRKSMLKLAK RMTDNFCGGV CASSLQKWSK LNVGNVDEDV RIMTRKSVND PGEPPGIVLN
601: AATSVWMPVS PKRLFDFLGN ERLRSEWDIL SNGGPMQEMA HIAKGHDHSN SVSLLRATAI NANQSSMLIL QETSIDAVGA VVVYAPVDIP AMQAVMNGGD
701: SAYVALLPSG FAILPSAPQR SEERNGNGSG GCMEEGGSLL TVAFQILVNS LPTAKLTVES VETVNNLISC TVQKIKAALH CDSN
101: KRYHRHTAKQ IQDLESVFKE CAHPDEKQRL DLSRKLNLDP RQVKFWFQNR RTQMKTQIER HENALLRQEN DKLRAENMSV REAMRNPMCS NCGGPAVLGE
201: VSMEEQHLRI ENSRLKDELD RVCALTGKFL GRSTSGSHHV PDSSLVLGVG VGSGGGFSLS SPSLPQASPR FEISNGTGLA TVNRQRPVSD FDQRSRYLDL
301: ALAAMEELVK MAQRHEPLWV RSSETGFEML NKEEYDTSFS RVVGPKQDGF VSEASKETGN VIINSLALVE TLMDSERWAE MFPSMISRTS TTEIISSGMG
401: GTRNGALHLM HAELQLLSPL VPVRQVSFLR FCKQHAEGVW AVVDVSIDSI REGSSSSCRR LPSGCLVQDM ANGYSKVTWI EHTEYDETRI HRLYRPLLSC
501: GLAFGAQRWM AALQRQCECL TILMSSTVSP SRSPTPISCN GRKSMLKLAK RMTDNFCGGV CASSLQKWSK LNVGNVDEDV RIMTRKSVND PGEPPGIVLN
601: AATSVWMPVS PKRLFDFLGN ERLRSEWDIL SNGGPMQEMA HIAKGHDHSN SVSLLRATAI NANQSSMLIL QETSIDAVGA VVVYAPVDIP AMQAVMNGGD
701: SAYVALLPSG FAILPSAPQR SEERNGNGSG GCMEEGGSLL TVAFQILVNS LPTAKLTVES VETVNNLISC TVQKIKAALH CDSN
001: MNFNGFLDDG AGASKLLSDA PYNNHFSFSA VDTMLGSAAI APSQSLPFSS SGLSLGLQTN GEMSRNGEIM ESNVSRKSSR GEDVESRSES DNAEAVSGDD
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST
Arabidopsis Description
HDG1HDG1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5Q4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.