Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48272 | Canola | nucleus | 92.5 | 77.13 |
| CDY12213 | Canola | nucleus | 91.65 | 75.56 |
| CDY19129 | Canola | nucleus | 62.52 | 50.48 |
| CDY15339 | Canola | nucleus | 62.18 | 49.93 |
| CDY06167 | Canola | nucleus | 52.98 | 43.19 |
| AT2G32370.1 | Thale cress | nucleus | 51.62 | 41.79 |
| CDY10041 | Canola | nucleus | 53.15 | 41.77 |
| CDX90879 | Canola | nucleus | 48.89 | 40.08 |
| CDY21319 | Canola | nucleus | 48.72 | 39.94 |
| CDY27417 | Canola | nucleus | 47.53 | 39.08 |
| CDX76399 | Canola | nucleus | 47.53 | 39.02 |
| CDY16639 | Canola | nucleus | 48.72 | 39.02 |
| CDX94586 | Canola | nucleus | 48.38 | 38.8 |
| CDY66622 | Canola | nucleus | 48.04 | 38.58 |
| CDY49515 | Canola | plasma membrane | 52.98 | 38.35 |
| CDX98703 | Canola | nucleus | 45.14 | 38.13 |
| PGSC0003DMT400048971 | Potato | nucleus | 36.8 | 38.03 |
| CDX94054 | Canola | nucleus | 44.97 | 37.99 |
| CDX79091 | Canola | nucleus | 47.7 | 37.53 |
| CDY46842 | Canola | nucleus | 52.98 | 37.47 |
| CDY71572 | Canola | nucleus | 24.87 | 37.15 |
| CDX89415 | Canola | cytosol, mitochondrion | 10.39 | 34.27 |
| PGSC0003DMT400094124 | Potato | nucleus | 43.61 | 33.86 |
| Solyc12g005830.1.1 | Tomato | nucleus | 40.89 | 31.96 |
| CDY18903 | Canola | nucleus | 37.31 | 31.06 |
| CDX74762 | Canola | nucleus | 37.31 | 30.93 |
| CDX96744 | Canola | nucleus | 35.26 | 30.76 |
| Solyc07g041850.1.1 | Tomato | nucleus | 35.6 | 30.74 |
| CDY26204 | Canola | nucleus | 32.71 | 30.14 |
| CDY19185 | Canola | nucleus | 34.92 | 30.06 |
| CDX67855 | Canola | nucleus | 39.86 | 30.0 |
| CDY00515 | Canola | nucleus | 34.24 | 29.87 |
| CDX96471 | Canola | nucleus | 36.46 | 29.8 |
| CDY45684 | Canola | nucleus | 39.69 | 29.72 |
| CDY26205 | Canola | nucleus | 34.92 | 29.71 |
| CDX83884 | Canola | nucleus | 34.58 | 29.64 |
| CDY07201 | Canola | nucleus | 39.52 | 29.44 |
| CDX72984 | Canola | nucleus | 35.78 | 29.37 |
| CDY69499 | Canola | cytosol | 15.16 | 29.28 |
| CDY31916 | Canola | nucleus | 33.56 | 29.27 |
| CDX74347 | Canola | nucleus | 39.52 | 29.26 |
| CDY51143 | Canola | nucleus | 39.35 | 29.24 |
| CDX91894 | Canola | nucleus | 39.18 | 28.97 |
| CDX68229 | Canola | nucleus | 34.58 | 28.88 |
| CDY11109 | Canola | nucleus | 34.41 | 28.45 |
| CDY62389 | Canola | cytosol | 23.68 | 28.43 |
| CDY42097 | Canola | nucleus | 24.7 | 28.05 |
| CDY39874 | Canola | plasma membrane | 8.18 | 25.0 |
| CDY43458 | Canola | nucleus | 34.41 | 24.88 |
| CDX79408 | Canola | nucleus | 33.05 | 24.87 |
| CDY03177 | Canola | nucleus | 34.92 | 24.82 |
| CDX67929 | Canola | nucleus | 33.05 | 24.78 |
| CDX89416 | Canola | nucleus | 27.26 | 24.65 |
| CDY08866 | Canola | nucleus | 30.66 | 24.46 |
| CDX94443 | Canola | cytosol | 26.06 | 24.36 |
| CDX77711 | Canola | nucleus | 34.07 | 24.3 |
| CDY33492 | Canola | nucleus | 32.88 | 24.25 |
| CDX76559 | Canola | nucleus | 30.15 | 24.11 |
| CDX85461 | Canola | cytosol | 28.96 | 24.11 |
| CDY53691 | Canola | nucleus | 28.79 | 23.8 |
| CDY43137 | Canola | nucleus | 27.43 | 23.37 |
| CDY67945 | Canola | nucleus | 27.26 | 23.22 |
| CDY49937 | Canola | nucleus | 27.43 | 23.2 |
| CDY02713 | Canola | nucleus | 29.13 | 23.14 |
| CDY21211 | Canola | nucleus | 27.26 | 23.05 |
| CDY42301 | Canola | nucleus | 26.75 | 22.75 |
| CDY44946 | Canola | nucleus | 25.04 | 22.69 |
| CDY16938 | Canola | nucleus | 25.38 | 22.58 |
| PGSC0003DMT400033830 | Potato | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 12.95 | 21.59 |
| CDY23096 | Canola | nucleus | 1.53 | 6.82 |
Protein Annotations
| EnsemblPlants:CDY30748 | EnsemblPlantsGene:GSBRNA2T00046106001 | GO:A0A078H1R7 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008289 |
| InterPro:IPR002913 | InterPro:START_lipid-bd_dom | ncoils:Coil | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF320 | PFAM:PF01852 |
| PFscan:PS50848 | ProteinID:CDY30748 | ProteinID:CDY30748.1 | SEG:seg | SMART:SM00234 | SUPFAM:SSF55961 |
| UniParc:UPI0004EF2536 | UniProt:A0A078H1R7 | MapMan:15.5.3.3 | : | : | : |
Description
BnaC05g51450DBnaC05g51450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H1R7]
Coordinates
chrLK032259:+:4870..15678
Molecular Weight (calculated)
65196.0 Da
IEP (calculated)
5.963
GRAVY (calculated)
-0.221
Length
587 amino acids
Sequence
(BLAST)
(BLAST)
001: MVTDEHNNTS LDMYFFFLFF LQNHQERHEN LQLREENTRL RADNHHFREG LAKASCPNCG GPTAVGEMSF EEHHLLLENA KLTEEIRQLS EVAKYTCKAV
101: MRYPVPPTPN QAPLFEPPMI TNGSIGNLSL SNIGSVKEAD KPLVIELAVG AMSELIALAQ MNEPLWKEGV HGMILDLNEY TRNLQNGLGP KPVGFRTEAS
201: RETAIVFMHH MDIVHRLMDV NLWSTMFAGM VGRAMTHDTL LTGGQGNLDG TIHLMTAEFQ VLSPLVSNRE CYFVRYCKQH GEDMPNRFSR VTWVEHVEVD
301: DRGELHAMFK HLLNSGQALG ANRWVSTLDR QCERLAIMMA SHIRSIEPGG QITVTNNAKH SLLNLVERMS RGFFDGVTTS NADIWMNLGD YTGDSVKVTT
401: RTSLNDPGRP EGLILCAAHS FWVPAPPTTV FDYLRDENNR VNWDVLFLGG NPQKLTHIFN GRDNRNCVSL LRSPNTSQSE MMMIEESSTE PAASFLVYAP
501: VDVPSMEKVL NGGDPKYVPL LPSGFAILPD GTAQPGKAGG SLVNVAFQML VDSFPSGSLT FSSVSTIESL ILAAANKIKA CFTQQTP
101: MRYPVPPTPN QAPLFEPPMI TNGSIGNLSL SNIGSVKEAD KPLVIELAVG AMSELIALAQ MNEPLWKEGV HGMILDLNEY TRNLQNGLGP KPVGFRTEAS
201: RETAIVFMHH MDIVHRLMDV NLWSTMFAGM VGRAMTHDTL LTGGQGNLDG TIHLMTAEFQ VLSPLVSNRE CYFVRYCKQH GEDMPNRFSR VTWVEHVEVD
301: DRGELHAMFK HLLNSGQALG ANRWVSTLDR QCERLAIMMA SHIRSIEPGG QITVTNNAKH SLLNLVERMS RGFFDGVTTS NADIWMNLGD YTGDSVKVTT
401: RTSLNDPGRP EGLILCAAHS FWVPAPPTTV FDYLRDENNR VNWDVLFLGG NPQKLTHIFN GRDNRNCVSL LRSPNTSQSE MMMIEESSTE PAASFLVYAP
501: VDVPSMEKVL NGGDPKYVPL LPSGFAILPD GTAQPGKAGG SLVNVAFQML VDSFPSGSLT FSSVSTIESL ILAAANKIKA CFTQQTP
001: MFEPNMLLAA MNNADSNNHN YNHEDNNNEG FLRDDEFDSP NTKSGSENQE GGSGNDQDPL HPNKKKRYHR HTQLQIQEME AFFKECPHPD DKQRKQLSRE
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A
Arabidopsis Description
HDG2AT1G05230 protein [Source:UniProtKB/TrEMBL;Acc:B9DFH8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.