Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19185 | Canola | nucleus | 96.55 | 90.18 |
| CDY26205 | Canola | nucleus | 93.88 | 86.67 |
| CDY42097 | Canola | nucleus | 67.35 | 82.98 |
| CDX96744 | Canola | nucleus | 86.5 | 81.87 |
| CDX83884 | Canola | nucleus | 85.87 | 79.85 |
| AT1G17920.1 | Thale cress | nucleus | 85.71 | 79.48 |
| Os06t0208100-00 | Rice | nucleus | 13.97 | 68.99 |
| CDX68229 | Canola | nucleus | 69.39 | 62.87 |
| CDX72984 | Canola | nucleus | 69.86 | 62.24 |
| CDX96471 | Canola | nucleus | 70.02 | 62.12 |
| CDY11109 | Canola | nucleus | 69.23 | 62.11 |
| VIT_17s0053g00780.t01 | Wine grape | nucleus | 65.93 | 59.15 |
| KRH09477 | Soybean | nucleus | 65.62 | 58.22 |
| KRH38939 | Soybean | nucleus | 64.99 | 57.34 |
| PGSC0003DMT400069312 | Potato | nucleus | 61.7 | 54.97 |
| KRH60596 | Soybean | nucleus | 61.07 | 54.56 |
| Solyc06g072310.2.1 | Tomato | nucleus | 61.38 | 54.53 |
| Solyc03g098200.2.1 | Tomato | nucleus | 61.22 | 54.09 |
| KRH41898 | Soybean | nucleus | 60.28 | 53.26 |
| TraesCS6D01G304300.1 | Wheat | nucleus | 54.32 | 50.51 |
| TraesCS6A01G324500.1 | Wheat | nucleus | 54.0 | 50.22 |
| GSMUA_Achr6P05990_001 | Banana | nucleus | 47.25 | 49.92 |
| TraesCS6B01G354900.3 | Wheat | nucleus | 54.0 | 49.35 |
| GSMUA_Achr10P... | Banana | nucleus | 54.95 | 49.23 |
| Zm00001d052133_P001 | Maize | nucleus | 53.06 | 48.42 |
| Zm00001d018225_P001 | Maize | nucleus | 52.43 | 48.27 |
| EES05874 | Sorghum | nucleus | 53.53 | 48.23 |
| GSMUA_Achr2P15140_001 | Banana | nucleus | 55.1 | 47.5 |
| Zm00001d044973_P001 | Maize | nucleus | 51.18 | 47.31 |
| Zm00001d037140_P004 | Maize | nucleus | 51.02 | 47.31 |
| GSMUA_Achr7P11310_001 | Banana | nucleus | 53.85 | 46.6 |
| EER89393 | Sorghum | nucleus | 51.18 | 46.57 |
| GSMUA_Achr10P... | Banana | nucleus | 49.29 | 46.04 |
| Os06t0207966-00 | Rice | plastid | 17.43 | 42.21 |
| CDY21319 | Canola | nucleus | 47.41 | 42.18 |
| TraesCS7A01G167900.1 | Wheat | nucleus | 47.88 | 42.07 |
| CDX90879 | Canola | nucleus | 47.25 | 42.04 |
| TraesCS7D01G168700.1 | Wheat | nucleus | 47.88 | 41.67 |
| CDY27417 | Canola | nucleus | 46.47 | 41.46 |
| CDY16639 | Canola | nucleus | 47.57 | 41.34 |
| CDX98703 | Canola | nucleus | 45.05 | 41.3 |
| CDX76399 | Canola | nucleus | 46.31 | 41.26 |
| TraesCS7B01G072700.1 | Wheat | nucleus | 47.25 | 41.23 |
| CDX94054 | Canola | nucleus | 44.9 | 41.15 |
| CDX94586 | Canola | nucleus | 47.25 | 41.12 |
| CDY66622 | Canola | nucleus | 47.1 | 41.04 |
| CDX79091 | Canola | nucleus | 46.78 | 39.95 |
| CDY06167 | Canola | nucleus | 45.05 | 39.86 |
| CDY71572 | Canola | nucleus | 24.02 | 38.93 |
| CDY10041 | Canola | nucleus | 44.9 | 38.29 |
| CDY18903 | Canola | nucleus | 40.66 | 36.74 |
| CDX74762 | Canola | nucleus | 40.82 | 36.72 |
| CDY31916 | Canola | nucleus | 38.3 | 36.26 |
| CDY00515 | Canola | nucleus | 38.15 | 36.11 |
| CDY49515 | Canola | plasma membrane | 45.37 | 35.63 |
| CDY23096 | Canola | nucleus | 7.38 | 35.61 |
| CDY51143 | Canola | nucleus | 44.11 | 35.57 |
| CDY07201 | Canola | nucleus | 43.96 | 35.53 |
| CDX91894 | Canola | nucleus | 44.11 | 35.39 |
| CDX74347 | Canola | nucleus | 43.8 | 35.18 |
| CDY48272 | Canola | nucleus | 38.62 | 34.94 |
| CDY46842 | Canola | nucleus | 45.53 | 34.94 |
| CDY12213 | Canola | nucleus | 38.46 | 34.41 |
| CDX67855 | Canola | nucleus | 42.07 | 34.36 |
| CDX76559 | Canola | nucleus | 39.25 | 34.06 |
| CDY45684 | Canola | nucleus | 41.92 | 34.06 |
| CDX85461 | Canola | cytosol | 37.68 | 34.04 |
| CDY44946 | Canola | nucleus | 34.38 | 33.8 |
| CDY16938 | Canola | nucleus | 35.01 | 33.79 |
| CDY19129 | Canola | nucleus | 38.3 | 33.56 |
| CDY08866 | Canola | nucleus | 38.78 | 33.56 |
| CDY33492 | Canola | nucleus | 41.6 | 33.29 |
| CDY15339 | Canola | nucleus | 37.83 | 32.97 |
| CDY62389 | Canola | cytosol | 25.12 | 32.72 |
| CDY30748 | Canola | endoplasmic reticulum | 30.14 | 32.71 |
| CDX77711 | Canola | nucleus | 42.23 | 32.69 |
| CDY53691 | Canola | nucleus | 36.42 | 32.68 |
| CDY67945 | Canola | nucleus | 35.32 | 32.66 |
| CDY42301 | Canola | nucleus | 35.32 | 32.61 |
| CDY43137 | Canola | nucleus | 35.16 | 32.51 |
| CDY02713 | Canola | nucleus | 37.68 | 32.48 |
| CDY43458 | Canola | nucleus | 41.29 | 32.39 |
| CDY03177 | Canola | nucleus | 41.6 | 32.08 |
| CDY49937 | Canola | nucleus | 32.97 | 30.26 |
| CDY21211 | Canola | nucleus | 32.81 | 30.12 |
| CDX67929 | Canola | nucleus | 36.58 | 29.76 |
| CDX79408 | Canola | nucleus | 35.95 | 29.36 |
| CDY69499 | Canola | cytosol | 13.5 | 28.29 |
| CDY39874 | Canola | plasma membrane | 8.16 | 27.08 |
| CDX89415 | Canola | cytosol, mitochondrion | 7.54 | 26.97 |
| TraesCSU01G150000.1 | Wheat | nucleus | 8.95 | 26.15 |
| CDX89416 | Canola | nucleus | 25.43 | 24.96 |
| CDX94443 | Canola | cytosol | 23.86 | 24.2 |
| TraesCSU01G244000.1 | Wheat | nucleus | 7.38 | 22.82 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | Gene3D:3.30.530.20 | GO:A0A078GLT4 | UniProt:A0A078GLT4 | EnsemblPlants:CDY26204 |
| ProteinID:CDY26204 | ProteinID:CDY26204.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00034870001 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR002913 |
| InterPro:IPR023393 | PFAM:PF00046 | PFAM:PF01852 | ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS50848 |
| PANTHER:PTHR24326 | PANTHER:PTHR24326:SF490 | SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 | SUPFAM:SSF55961 |
| InterPro:START-like_dom_sf | InterPro:START_lipid-bd_dom | UniParc:UPI0004EF2A86 | SEG:seg | : | : |
Description
BnaA06g12130DBnaA06g12130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GLT4]
Coordinates
chrLK032186:+:282681..285936
Molecular Weight (calculated)
71420.5 Da
IEP (calculated)
7.198
GRAVY (calculated)
-0.354
Length
637 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFLGDSSET DKKKMKKRFH RHTPHQIHRL ESSFNECQHP DEKQRLQLSK ELGLSPRQIK FWFQNRRTQK KAQHERADNC ALKEENDRIR CENIAIREAI
101: KHAICLNCGD APLHEDSYFD EQKLRIENAH LREELEKVSS IAAQFMGRPL SHLPPLLNPM HVSPLELFHS GPSLDFDLLP GSSSSSMAVP TLPSQPNLVL
201: SDMDKSLMTN IAVTAMEELL RLTQTNEPLW IKANGCRDVL NPQSYENMFP RSSGRGGKNH NLRKEATRSS GVVFTNAMTL VDMLMDSVKS SELFSSIIAS
301: SKTLAVISSG LRGNHGDALH LMLEELQVLS PLVPTREFSV LRYCQQIEHG TWAIVNVSYE LPQFITHARS YRFPSGCLIQ DLSNGYSKVS WVEHVEVEEQ
401: EPIHEMFKDN VREGIAFGAE RWIATLQRMC ERFTALLEPA TSSRDLKGVI PLPEGKQSIM RLAQRMVSNF CLSVGTSNNT RTPVFSGLDA FGIRVTSYKS
501: QHEPNGMVLC AATSFWLPVS PQNVFNYLKD ERTRPQWDVL LNGNSVQEVA HIANGSHPGN CISVLRGFNA SSSQNNMLIL QESCVDSSGS LVVYTPLDLP
601: ALNMAMSGQD TSYIPILPSG FAISPDGSRK LVCLKKS
101: KHAICLNCGD APLHEDSYFD EQKLRIENAH LREELEKVSS IAAQFMGRPL SHLPPLLNPM HVSPLELFHS GPSLDFDLLP GSSSSSMAVP TLPSQPNLVL
201: SDMDKSLMTN IAVTAMEELL RLTQTNEPLW IKANGCRDVL NPQSYENMFP RSSGRGGKNH NLRKEATRSS GVVFTNAMTL VDMLMDSVKS SELFSSIIAS
301: SKTLAVISSG LRGNHGDALH LMLEELQVLS PLVPTREFSV LRYCQQIEHG TWAIVNVSYE LPQFITHARS YRFPSGCLIQ DLSNGYSKVS WVEHVEVEEQ
401: EPIHEMFKDN VREGIAFGAE RWIATLQRMC ERFTALLEPA TSSRDLKGVI PLPEGKQSIM RLAQRMVSNF CLSVGTSNNT RTPVFSGLDA FGIRVTSYKS
501: QHEPNGMVLC AATSFWLPVS PQNVFNYLKD ERTRPQWDVL LNGNSVQEVA HIANGSHPGN CISVLRGFNA SSSQNNMLIL QESCVDSSGS LVVYTPLDLP
601: ALNMAMSGQD TSYIPILPSG FAISPDGSRK LVCLKKS
001: MEFLGDSQNH DSSETEKKNK KKKRFHRHTP HQIQRLESTF NECQHPDEKQ RNQLSRELGL APRQIKFWFQ NRRTQKKAQH ERADNCALKE ENDKIRCENI
101: AIREAIKHAI CPSCGDSPVN EDSYFDEQKL RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS SMSVPSLPSQ
201: PNLVLSEMDK SLMTNIAVTA MEELLRLLQT NEPLWIKTDG CRDVLNLENY ENMFTRSSTS GGKKNNLGME ASRSSGVVFT NAITLVDMLM NSVKLTELFP
301: SIVASSKTLA VISSGLRGNH GDALHLMIEE LQVLSPLVTT REFCVLRYCQ QIEHGTWAIV NVSYEFPQFI SQSRSYRFPS GCLIQDMSNG YSKVTWVEHG
401: EFEEQEPIHE MFKDIVHKGL AFGAERWIAT LQRMCERFTN LLEPATSSLD LGGVIPSPEG KRSIMRLAHR MVSNFCLSVG TSNNTRSTVV SGLDEFGIRV
501: TSHKSRHEPN GMVLCAATSF WLPISPQNVF NFLKDERTRP QWDVLSNGNS VQEVAHITNG SNPGNCISVL RGFNASSSQN NMLILQESCI DSSSAALVIY
601: TPVDLPALNI AMSGQDTSYI PILPSGFAIS PDGSSKGGGS LITVGFQIMV SGLQPAKLNM ESMETVNNLI NTTVHQIKTT LNCPSTA
101: AIREAIKHAI CPSCGDSPVN EDSYFDEQKL RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS SMSVPSLPSQ
201: PNLVLSEMDK SLMTNIAVTA MEELLRLLQT NEPLWIKTDG CRDVLNLENY ENMFTRSSTS GGKKNNLGME ASRSSGVVFT NAITLVDMLM NSVKLTELFP
301: SIVASSKTLA VISSGLRGNH GDALHLMIEE LQVLSPLVTT REFCVLRYCQ QIEHGTWAIV NVSYEFPQFI SQSRSYRFPS GCLIQDMSNG YSKVTWVEHG
401: EFEEQEPIHE MFKDIVHKGL AFGAERWIAT LQRMCERFTN LLEPATSSLD LGGVIPSPEG KRSIMRLAHR MVSNFCLSVG TSNNTRSTVV SGLDEFGIRV
501: TSHKSRHEPN GMVLCAATSF WLPISPQNVF NFLKDERTRP QWDVLSNGNS VQEVAHITNG SNPGNCISVL RGFNASSSQN NMLILQESCI DSSSAALVIY
601: TPVDLPALNI AMSGQDTSYI PILPSGFAIS PDGSSKGGGS LITVGFQIMV SGLQPAKLNM ESMETVNNLI NTTVHQIKTT LNCPSTA
Arabidopsis Description
HDG12Uncharacterized protein At1g17920 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUW2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.