Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os06t0208100-00 | Rice | nucleus | 17.41 | 81.4 |
| GSMUA_Achr10P... | Banana | nucleus | 76.95 | 65.26 |
| GSMUA_Achr7P11310_001 | Banana | nucleus | 78.61 | 64.4 |
| GSMUA_Achr2P15140_001 | Banana | nucleus | 76.45 | 62.38 |
| Zm00001d018225_P001 | Maize | nucleus | 61.53 | 53.61 |
| Zm00001d052133_P001 | Maize | nucleus | 61.86 | 53.44 |
| VIT_17s0053g00780.t01 | Wine grape | nucleus | 62.69 | 53.24 |
| KRH38939 | Soybean | nucleus | 63.52 | 53.05 |
| EES05874 | Sorghum | nucleus | 62.19 | 53.04 |
| KRH09477 | Soybean | nucleus | 62.85 | 52.79 |
| TraesCS6A01G324500.1 | Wheat | nucleus | 59.87 | 52.7 |
| CDY42097 | Canola | nucleus | 45.11 | 52.61 |
| TraesCS6D01G304300.1 | Wheat | nucleus | 59.7 | 52.55 |
| GSMUA_Achr10P... | Banana | nucleus | 59.04 | 52.2 |
| KRH60596 | Soybean | nucleus | 61.19 | 51.75 |
| TraesCS6B01G354900.3 | Wheat | nucleus | 59.7 | 51.65 |
| KRH41898 | Soybean | nucleus | 61.69 | 51.59 |
| Zm00001d037140_P004 | Maize | nucleus | 57.71 | 50.66 |
| Zm00001d044973_P001 | Maize | nucleus | 57.38 | 50.22 |
| Solyc03g098200.2.1 | Tomato | nucleus | 59.87 | 50.07 |
| EER89393 | Sorghum | nucleus | 57.55 | 49.57 |
| HORVU6Hr1G079410.6 | Barley | nucleus | 59.54 | 49.52 |
| CDX96744 | Canola | nucleus | 53.9 | 48.29 |
| AT1G17920.1 | Thale cress | nucleus | 54.73 | 48.03 |
| PGSC0003DMT400069312 | Potato | nucleus | 56.88 | 47.97 |
| Bra016578.1-P | Field mustard | nucleus | 54.06 | 47.66 |
| CDX83884 | Canola | nucleus | 54.06 | 47.59 |
| Solyc06g072310.2.1 | Tomato | nucleus | 56.38 | 47.42 |
| CDY19185 | Canola | nucleus | 53.57 | 47.36 |
| CDY26204 | Canola | nucleus | 49.92 | 47.25 |
| AT1G73360.1 | Thale cress | nucleus | 55.72 | 46.54 |
| CDY26205 | Canola | nucleus | 53.07 | 46.38 |
| Bra025938.1-P | Field mustard | nucleus | 53.07 | 46.11 |
| CDX96471 | Canola | nucleus | 54.73 | 45.96 |
| CDX68229 | Canola | nucleus | 53.57 | 45.95 |
| Bra015996.1-P | Field mustard | nucleus | 54.56 | 45.89 |
| CDX72984 | Canola | nucleus | 54.23 | 45.73 |
| Bra003846.1-P | Field mustard | nucleus | 53.23 | 45.53 |
| CDY11109 | Canola | nucleus | 52.9 | 44.93 |
| TraesCS7B01G072700.1 | Wheat | nucleus | 53.4 | 44.11 |
| TraesCS7A01G167900.1 | Wheat | nucleus | 52.74 | 43.86 |
| TraesCS7D01G168700.1 | Wheat | nucleus | 52.9 | 43.58 |
| Solyc09g057530.1.1 | Tomato | cytosol | 9.62 | 42.34 |
| VIT_04s0079g00480.t01 | Wine grape | nucleus | 49.42 | 41.74 |
| GSMUA_Achr3P23090_001 | Banana | endoplasmic reticulum, plasma membrane | 44.44 | 40.61 |
| HORVU7Hr1G035230.2 | Barley | nucleus | 49.42 | 40.05 |
| Os06t0207966-00 | Rice | plastid | 16.75 | 38.4 |
| GSMUA_Achr8P07310_001 | Banana | mitochondrion, nucleus | 45.77 | 38.02 |
| KRH11810 | Soybean | nucleus | 44.44 | 37.59 |
| KRH36827 | Soybean | nucleus | 44.11 | 37.52 |
| GSMUA_Achr10P... | Banana | nucleus | 44.11 | 37.2 |
| GSMUA_Achr1P18760_001 | Banana | nucleus | 46.27 | 36.9 |
| GSMUA_Achr5P14100_001 | Banana | nucleus | 46.1 | 36.77 |
| Solyc07g026570.1.1 | Tomato | nucleus | 8.46 | 36.17 |
| GSMUA_Achr7P00210_001 | Banana | nucleus | 39.8 | 35.35 |
| GSMUA_Achr11P... | Banana | nucleus | 43.45 | 35.22 |
| AT3G03260.1 | Thale cress | nucleus | 40.8 | 35.19 |
| PGSC0003DMT400038820 | Potato | extracellular | 20.9 | 34.62 |
| GSMUA_Achr11P... | Banana | nucleus | 44.44 | 34.54 |
| GSMUA_Achr5P20050_001 | Banana | nucleus | 45.44 | 34.47 |
| GSMUA_Achr4P19010_001 | Banana | nucleus | 45.77 | 34.46 |
| GSMUA_Achr3P12410_001 | Banana | nucleus | 42.29 | 34.37 |
| GSMUA_Achr11P... | Banana | plastid | 44.94 | 34.35 |
| GSMUA_Achr5P10510_001 | Banana | nucleus | 45.11 | 34.21 |
| CDX85461 | Canola | cytosol | 39.8 | 34.04 |
| Bra023611.1-P | Field mustard | nucleus | 39.64 | 33.9 |
| GSMUA_AchrUn_... | Banana | nucleus | 43.12 | 33.81 |
| CDY16938 | Canola | nucleus | 36.98 | 33.79 |
| AT5G17320.1 | Thale cress | nucleus | 40.13 | 33.7 |
| KRH36826 | Soybean | nucleus | 39.8 | 33.66 |
| PGSC0003DMT400051266 | Potato | cytosol | 21.56 | 33.42 |
| Solyc05g015030.1.1 | Tomato | cytosol | 26.04 | 33.12 |
| CDY43137 | Canola | nucleus | 37.15 | 32.51 |
| Bra020066.1-P | Field mustard | nucleus | 36.65 | 32.4 |
| Bra032003.1-P | Field mustard | nucleus | 36.98 | 32.37 |
| CDY42301 | Canola | nucleus | 36.82 | 32.17 |
| CDY44946 | Canola | nucleus | 34.49 | 32.1 |
| CDY67945 | Canola | nucleus | 36.65 | 32.08 |
| CDY02713 | Canola | nucleus | 39.14 | 31.93 |
| AT1G34650.1 | Thale cress | nucleus | 37.48 | 31.92 |
| Bra003213.1-P | Field mustard | nucleus | 37.48 | 31.83 |
| CDY53691 | Canola | nucleus | 37.48 | 31.83 |
| Solyc04g025490.1.1 | Tomato | cytosol | 12.77 | 31.82 |
| PGSC0003DMT400034503 | Potato | cytosol, nucleus | 35.82 | 31.72 |
| CDY49937 | Canola | nucleus | 36.15 | 31.41 |
| CDY21211 | Canola | nucleus | 35.82 | 31.12 |
| Solyc11g011940.1.1 | Tomato | nucleus | 36.98 | 31.1 |
| Bra021363.1-P | Field mustard | nucleus | 37.31 | 30.95 |
| PGSC0003DMT400051268 | Potato | cytosol | 25.54 | 30.86 |
| Bra008562.1-P | Field mustard | cytosol, nucleus, plastid | 36.98 | 30.84 |
| Solyc09g057540.2.1 | Tomato | cytosol | 25.21 | 30.58 |
| Solyc09g066030.1.1 | Tomato | nucleus | 36.48 | 30.43 |
| Solyc09g066070.2.1 | Tomato | cytosol | 21.72 | 30.39 |
| Solyc07g037910.1.1 | Tomato | cytosol | 10.61 | 30.33 |
| Solyc10g018030.1.1 | Tomato | cytosol | 20.73 | 30.27 |
| CDY62389 | Canola | cytosol | 24.38 | 30.06 |
| GSMUA_Achr3P15400_001 | Banana | nucleus | 37.31 | 30.04 |
| PGSC0003DMT400085057 | Potato | cytosol | 23.71 | 29.92 |
| Solyc09g060140.2.1 | Tomato | mitochondrion | 18.24 | 29.89 |
| Solyc08g062510.2.1 | Tomato | nucleus | 32.17 | 29.71 |
| KRH42428 | Soybean | nucleus | 37.15 | 29.59 |
| Solyc09g066050.2.1 | Tomato | cytosol | 26.87 | 29.29 |
| Solyc10g018000.1.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 32.67 | 28.18 |
| Solyc09g060130.1.1 | Tomato | cytosol | 20.56 | 27.93 |
| GSMUA_Achr8P27340_001 | Banana | nucleus | 34.49 | 27.77 |
| Solyc07g026560.1.1 | Tomato | cytosol | 21.72 | 27.7 |
| Solyc09g060170.1.1 | Tomato | cytosol | 15.42 | 27.03 |
| Solyc11g022420.1.1 | Tomato | cytosol | 21.06 | 26.51 |
| Solyc08g062520.2.1 | Tomato | cytosol | 21.89 | 25.83 |
| PGSC0003DMT400036411 | Potato | nucleus | 22.39 | 25.71 |
| TraesCSU01G150000.1 | Wheat | nucleus | 9.12 | 25.23 |
| KRH42429 | Soybean | cytosol | 30.35 | 25.07 |
| Solyc04g025480.1.1 | Tomato | cytosol | 26.87 | 24.73 |
| Solyc10g018020.1.1 | Tomato | extracellular | 13.76 | 24.7 |
| Bra007562.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 11.44 | 24.13 |
| TraesCSU01G244000.1 | Wheat | nucleus | 7.79 | 22.82 |
| CDY69499 | Canola | cytosol | 11.28 | 22.37 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | Gene3D:3.30.530.20 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | EnsemblPlantsGene:GSMUA_Achr6G05990_001 | EnsemblPlants:GSMUA_Achr6P05990_001 | EnsemblPlants:GSMUA_Achr6T05990_001 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS |
| InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR002913 | InterPro:IPR023393 | UniProt:M0T4J7 | PFAM:PF00046 |
| PFAM:PF01852 | ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS50848 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF490 |
| SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 | SUPFAM:SSF55961 | InterPro:START-like_dom_sf | InterPro:START_lipid-bd_dom |
| UniParc:UPI000294D3FC | SEG:seg | : | : | : | : |
Description
Homeobox-leucine zipper protein ROC8 [Source:GMGC_GENE;Acc:GSMUA_Achr6G05990_001]
Coordinates
chr6:-:4042260..4045542
Molecular Weight (calculated)
67398.9 Da
IEP (calculated)
7.309
GRAVY (calculated)
-0.293
Length
603 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSGDEQDVP DAKGRKKRYH RHTPRQIQEL ESMFKVCPHP DEKQRMQLSR DLALEPRQIK FWFQNRRTQM KASTAPPLLS FLFSLAQHDR ADNCVLRAEN
101: DKIRAENIAM MEALKSVICP SCGGPPTHED SYFDDQKLRM ENARLKEELD HVSSIASKYL GRPVTQLPPV QPVSVSSLDL SVGVYSAVSE LEKPLMVEMA
201: TGAAEEVLRL VQTDQPLWVK SGSDGRDRLQ LEIYDRMFQR SGQHLRFPHT RTETSRDSAP VAMNAMTLID MFMDASKWAE LFPSIVAKAR TIEVLAAGMA
301: SSRSGSLVLM YEELQVLSPL VPTREFCFLR YCQQIESGMW VVADVSVDYP RDNQLGLSPR SRRLPSGCLI EETPDGYSKI TWVEHMEIDA NDQPHVLFKD
401: LINSGTAFGA QRWITTLRRM CERFACSNVA GLPGRDLGVV SSPDGKRSMM KLAQRMVNNF CANVGASSDQ KWTNVSGSND VGVRVVLQKT SDAGQPSGVV
501: LCAATSIWLP VSAERVFSLF KDERTRTQWH ILSNGNTLQE VAHITNGSHP GNCISLLRVC FLSLNTMFSL PSAKLNMESV MTVNHLIGTT VQQIKVALNC
601: ADA
101: DKIRAENIAM MEALKSVICP SCGGPPTHED SYFDDQKLRM ENARLKEELD HVSSIASKYL GRPVTQLPPV QPVSVSSLDL SVGVYSAVSE LEKPLMVEMA
201: TGAAEEVLRL VQTDQPLWVK SGSDGRDRLQ LEIYDRMFQR SGQHLRFPHT RTETSRDSAP VAMNAMTLID MFMDASKWAE LFPSIVAKAR TIEVLAAGMA
301: SSRSGSLVLM YEELQVLSPL VPTREFCFLR YCQQIESGMW VVADVSVDYP RDNQLGLSPR SRRLPSGCLI EETPDGYSKI TWVEHMEIDA NDQPHVLFKD
401: LINSGTAFGA QRWITTLRRM CERFACSNVA GLPGRDLGVV SSPDGKRSMM KLAQRMVNNF CANVGASSDQ KWTNVSGSND VGVRVVLQKT SDAGQPSGVV
501: LCAATSIWLP VSAERVFSLF KDERTRTQWH ILSNGNTLQE VAHITNGSHP GNCISLLRVC FLSLNTMFSL PSAKLNMESV MTVNHLIGTT VQQIKVALNC
601: ADA
001: MSFVVGVGGS GSGSGGDGGG SHHHDGSETD RKKKRYHRHT AQQIQRLESS FKECPHPDEK QRNQLSRELG LAPRQIKFWF QNRRTQLKAQ HERADNSALK
101: AENDKIRCEN IAIREALKHA ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP LDLSMTSLTG CGPFGHGPSL
201: DFDLLPGSSM AVGPNNNLQS QPNLAISDMD KPIMTGIALT AMEELLRLLQ TNEPLWTRTD GCRDILNLGS YENVFPRSSN RGKNQNFRVE ASRSSGIVFM
301: NAMALVDMFM DCVKWTELFP SIIAASKTLA VISSGMGGTH EGALHLLYEE MEVLSPLVAT REFCELRYCQ QTEQGSWIVV NVSYDLPQFV SHSQSYRFPS
401: GCLIQDMPNG YSKVTWVEHI ETEEKELVHE LYREIIHRGI AFGADRWVTT LQRMCERFAS LSVPASSSRD LGGVILSPEG KRSMMRLAQR MISNYCLSVS
501: RSNNTRSTVV SELNEVGIRV TAHKSPEPNG TVLCAATTFW LPNSPQNVFN FLKDERTRPQ WDVLSNGNAV QEVAHISNGS HPGNCISVLR GSNATHSNNM
601: LILQESSTDS SGAFVVYSPV DLAALNIAMS GEDPSYIPLL SSGFTISPDG NGSNSEQGGA STSSGRASAS GSLITVGFQI MVSNLPTAKL NMESVETVNN
701: LIGTTVHQIK TALSGPTAST TA
101: AENDKIRCEN IAIREALKHA ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP LDLSMTSLTG CGPFGHGPSL
201: DFDLLPGSSM AVGPNNNLQS QPNLAISDMD KPIMTGIALT AMEELLRLLQ TNEPLWTRTD GCRDILNLGS YENVFPRSSN RGKNQNFRVE ASRSSGIVFM
301: NAMALVDMFM DCVKWTELFP SIIAASKTLA VISSGMGGTH EGALHLLYEE MEVLSPLVAT REFCELRYCQ QTEQGSWIVV NVSYDLPQFV SHSQSYRFPS
401: GCLIQDMPNG YSKVTWVEHI ETEEKELVHE LYREIIHRGI AFGADRWVTT LQRMCERFAS LSVPASSSRD LGGVILSPEG KRSMMRLAQR MISNYCLSVS
501: RSNNTRSTVV SELNEVGIRV TAHKSPEPNG TVLCAATTFW LPNSPQNVFN FLKDERTRPQ WDVLSNGNAV QEVAHISNGS HPGNCISVLR GSNATHSNNM
601: LILQESSTDS SGAFVVYSPV DLAALNIAMS GEDPSYIPLL SSGFTISPDG NGSNSEQGGA STSSGRASAS GSLITVGFQI MVSNLPTAKL NMESVETVNN
701: LIGTTVHQIK TALSGPTAST TA
Arabidopsis Description
HDG11Homeobox-leucine zipper protein HDG11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX31]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.