Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g037910.1.1 | Tomato | cytosol | 40.17 | 90.05 |
| Solyc11g022410.1.1 | Tomato | extracellular | 9.94 | 63.51 |
| Solyc10g018030.1.1 | Tomato | cytosol | 54.12 | 61.99 |
| Solyc10g018020.1.1 | Tomato | extracellular | 43.13 | 60.71 |
| Solyc09g060170.1.1 | Tomato | cytosol | 42.28 | 58.14 |
| Solyc09g066070.2.1 | Tomato | cytosol | 52.22 | 57.31 |
| Solyc11g022420.1.1 | Tomato | cytosol | 55.6 | 54.91 |
| Solyc11g022430.1.1 | Tomato | cytosol | 20.51 | 54.19 |
| Solyc09g060130.1.1 | Tomato | cytosol | 50.11 | 53.38 |
| Solyc04g025490.1.1 | Tomato | cytosol | 26.85 | 52.48 |
| Solyc09g057530.1.1 | Tomato | cytosol | 14.38 | 49.63 |
| Solyc09g057540.2.1 | Tomato | cytosol | 51.8 | 49.3 |
| Solyc09g066050.2.1 | Tomato | cytosol | 57.29 | 49.01 |
| Solyc09g060140.2.1 | Tomato | mitochondrion | 37.84 | 48.64 |
| Solyc08g062520.2.1 | Tomato | cytosol | 52.22 | 48.34 |
| Solyc08g062510.2.1 | Tomato | nucleus | 58.56 | 42.42 |
| Solyc11g011940.1.1 | Tomato | nucleus | 63.42 | 41.84 |
| Solyc04g025480.1.1 | Tomato | cytosol | 57.93 | 41.83 |
| Solyc10g018000.1.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 60.89 | 41.2 |
| Solyc05g015030.1.1 | Tomato | cytosol | 40.59 | 40.51 |
| Solyc09g066030.1.1 | Tomato | nucleus | 61.73 | 40.39 |
| CDY62389 | Canola | cytosol | 37.84 | 36.61 |
| CDY69499 | Canola | cytosol | 21.56 | 33.55 |
| VIT_04s0079g00480.t01 | Wine grape | nucleus | 41.23 | 27.31 |
| CDX85461 | Canola | cytosol | 38.9 | 26.1 |
| Bra023611.1-P | Field mustard | nucleus | 38.69 | 25.96 |
| CDY53691 | Canola | nucleus | 38.9 | 25.92 |
| Bra003213.1-P | Field mustard | nucleus | 38.9 | 25.92 |
| KRH36827 | Soybean | nucleus | 38.27 | 25.53 |
| Os06t0207966-00 | Rice | plastid | 14.16 | 25.48 |
| Bra008562.1-P | Field mustard | cytosol, nucleus, plastid | 38.48 | 25.17 |
| CDY02713 | Canola | nucleus | 39.32 | 25.17 |
| KRH11810 | Soybean | nucleus | 37.42 | 24.82 |
| AT3G03260.1 | Thale cress | nucleus | 36.36 | 24.61 |
| Solyc03g031760.2.1 | Tomato | cytosol | 32.56 | 24.48 |
| Solyc10g006420.2.1 | Tomato | cytosol | 27.06 | 24.29 |
| CDY16938 | Canola | nucleus | 33.19 | 23.79 |
| KRH36826 | Soybean | nucleus | 35.73 | 23.7 |
| GSMUA_Achr10P... | Banana | nucleus | 34.04 | 23.61 |
| CDY42301 | Canola | nucleus | 34.04 | 23.33 |
| AT1G34650.1 | Thale cress | nucleus | 34.88 | 23.31 |
| Bra032003.1-P | Field mustard | nucleus | 33.83 | 23.22 |
| CDY43137 | Canola | nucleus | 33.62 | 23.08 |
| Bra020066.1-P | Field mustard | nucleus | 33.19 | 23.02 |
| AT5G17320.1 | Thale cress | nucleus | 34.88 | 22.98 |
| GSMUA_Achr10P... | Banana | nucleus | 34.04 | 22.64 |
| CDY67945 | Canola | nucleus | 32.98 | 22.64 |
| Solyc03g098200.2.1 | Tomato | nucleus | 34.46 | 22.61 |
| GSMUA_Achr7P11310_001 | Banana | nucleus | 34.67 | 22.28 |
| TraesCS6A01G324500.1 | Wheat | nucleus | 32.14 | 22.19 |
| TraesCS6D01G304300.1 | Wheat | nucleus | 32.14 | 22.19 |
| CDY44946 | Canola | nucleus | 30.02 | 21.91 |
| Solyc06g072310.2.1 | Tomato | nucleus | 33.19 | 21.9 |
| TraesCS6B01G354900.3 | Wheat | nucleus | 32.14 | 21.81 |
| GSMUA_Achr6P05990_001 | Banana | nucleus | 27.7 | 21.72 |
| Zm00001d018225_P001 | Maize | nucleus | 31.71 | 21.68 |
| Bra021363.1-P | Field mustard | nucleus | 32.98 | 21.46 |
| KRH42429 | Soybean | cytosol | 32.98 | 21.37 |
| Zm00001d052133_P001 | Maize | nucleus | 31.29 | 21.2 |
| CDY21211 | Canola | nucleus | 31.08 | 21.18 |
| CDY49937 | Canola | nucleus | 31.08 | 21.18 |
| Zm00001d044973_P001 | Maize | nucleus | 30.66 | 21.05 |
| EER89393 | Sorghum | nucleus | 31.08 | 21.0 |
| GSMUA_Achr2P15140_001 | Banana | nucleus | 32.77 | 20.97 |
| EES05874 | Sorghum | nucleus | 31.29 | 20.93 |
| KRH42428 | Soybean | nucleus | 33.4 | 20.87 |
| Zm00001d037140_P004 | Maize | nucleus | 30.23 | 20.82 |
| Solyc10g005330.2.1 | Tomato | nucleus | 31.08 | 20.65 |
| TraesCS7A01G167900.1 | Wheat | nucleus | 30.66 | 20.0 |
| TraesCS7D01G168700.1 | Wheat | nucleus | 30.87 | 19.95 |
| TraesCS7B01G072700.1 | Wheat | nucleus | 30.66 | 19.86 |
| Solyc02g080260.2.1 | Tomato | nucleus | 30.66 | 19.31 |
| Solyc07g041850.1.1 | Tomato | nucleus | 27.48 | 19.12 |
| Solyc03g120620.2.1 | Tomato | nucleus | 30.87 | 18.84 |
| Solyc06g035940.2.1 | Tomato | nucleus | 26.0 | 18.2 |
| Solyc12g005830.1.1 | Tomato | nucleus | 28.33 | 17.84 |
| Solyc08g076370.2.1 | Tomato | nucleus | 31.5 | 17.7 |
| Solyc06g050160.2.1 | Tomato | nucleus | 24.31 | 17.61 |
| Solyc01g091630.2.1 | Tomato | nucleus | 30.02 | 17.3 |
| Solyc03g026070.2.1 | Tomato | nucleus | 26.43 | 15.49 |
| Solyc04g025740.1.1 | Tomato | nucleus | 0.42 | 1.35 |
| Solyc07g026570.1.1 | Tomato | nucleus | 0.0 | 0.0 |
| Os06t0208100-00 | Rice | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Solyc07g026560.1.1 | EnsemblPlantsGene:Solyc07g026560.1 | Gene3D:3.30.530.20 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008289 |
| InterPro:IPR002913 | InterPro:IPR023393 | InterPro:START-like_dom_sf | InterPro:START_lipid-bd_dom | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF504 |
| PFAM:PF01852 | PFscan:PS50848 | SMART:SM00234 | SUPFAM:SSF55961 | UniParc:UPI000276AE1B | UniProt:K4CDA2 |
| MapMan:15.5.3.3 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7:-:29068028..29072570
Molecular Weight (calculated)
53768.5 Da
IEP (calculated)
5.175
GRAVY (calculated)
-0.171
Length
473 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSLPQGNCG IHHDNRGKSI FDIVDAGMKE MLVLLDVNDP IWVKSSGDER CFIHCESYDR KFPNSYRPYK SSTTRIESSK HFGVVPMTAT ELIPIFLDPI
101: KWMNMFPTIV RKARNIDVVN PANIEGSIQL MYEQLHTLSP LVEAREFFII RCCRKLDQTT WIMLDVSYDL FEETQTNVPS YAWKFPSGCA IQDLGNGGSM
201: VTWIEHIQVD DKNQVYDIFK DFVYGHQTYG AERWIVTLQR MSERYNFAMG AIFPTEHDLK GVIYDIPKGV NNLMNLSQRM VKSFFEILSM KDGLEFSTSS
301: QLNCGERVSV RKNLEITQQQ GFIATAATSL WLPLSFETIF NFLKDDNTRC QCYMPTENKL LLQESNIDEM GAFLIYGLID LSTYNSIVDG SDAKEFAILP
401: SGIIISHDGR LGSDRNNNGN VQNGSILTVA LQELICANNH LISQQQQMEA MTYIHNLLSS TILKIKAALC YSD
101: KWMNMFPTIV RKARNIDVVN PANIEGSIQL MYEQLHTLSP LVEAREFFII RCCRKLDQTT WIMLDVSYDL FEETQTNVPS YAWKFPSGCA IQDLGNGGSM
201: VTWIEHIQVD DKNQVYDIFK DFVYGHQTYG AERWIVTLQR MSERYNFAMG AIFPTEHDLK GVIYDIPKGV NNLMNLSQRM VKSFFEILSM KDGLEFSTSS
301: QLNCGERVSV RKNLEITQQQ GFIATAATSL WLPLSFETIF NFLKDDNTRC QCYMPTENKL LLQESNIDEM GAFLIYGLID LSTYNSIVDG SDAKEFAILP
401: SGIIISHDGR LGSDRNNNGN VQNGSILTVA LQELICANNH LISQQQQMEA MTYIHNLLSS TILKIKAALC YSD
001: MEFLGDSQNH DSSETEKKNK KKKRFHRHTP HQIQRLESTF NECQHPDEKQ RNQLSRELGL APRQIKFWFQ NRRTQKKAQH ERADNCALKE ENDKIRCENI
101: AIREAIKHAI CPSCGDSPVN EDSYFDEQKL RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS SMSVPSLPSQ
201: PNLVLSEMDK SLMTNIAVTA MEELLRLLQT NEPLWIKTDG CRDVLNLENY ENMFTRSSTS GGKKNNLGME ASRSSGVVFT NAITLVDMLM NSVKLTELFP
301: SIVASSKTLA VISSGLRGNH GDALHLMIEE LQVLSPLVTT REFCVLRYCQ QIEHGTWAIV NVSYEFPQFI SQSRSYRFPS GCLIQDMSNG YSKVTWVEHG
401: EFEEQEPIHE MFKDIVHKGL AFGAERWIAT LQRMCERFTN LLEPATSSLD LGGVIPSPEG KRSIMRLAHR MVSNFCLSVG TSNNTRSTVV SGLDEFGIRV
501: TSHKSRHEPN GMVLCAATSF WLPISPQNVF NFLKDERTRP QWDVLSNGNS VQEVAHITNG SNPGNCISVL RGFNASSSQN NMLILQESCI DSSSAALVIY
601: TPVDLPALNI AMSGQDTSYI PILPSGFAIS PDGSSKGGGS LITVGFQIMV SGLQPAKLNM ESMETVNNLI NTTVHQIKTT LNCPSTA
101: AIREAIKHAI CPSCGDSPVN EDSYFDEQKL RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS SMSVPSLPSQ
201: PNLVLSEMDK SLMTNIAVTA MEELLRLLQT NEPLWIKTDG CRDVLNLENY ENMFTRSSTS GGKKNNLGME ASRSSGVVFT NAITLVDMLM NSVKLTELFP
301: SIVASSKTLA VISSGLRGNH GDALHLMIEE LQVLSPLVTT REFCVLRYCQ QIEHGTWAIV NVSYEFPQFI SQSRSYRFPS GCLIQDMSNG YSKVTWVEHG
401: EFEEQEPIHE MFKDIVHKGL AFGAERWIAT LQRMCERFTN LLEPATSSLD LGGVIPSPEG KRSIMRLAHR MVSNFCLSVG TSNNTRSTVV SGLDEFGIRV
501: TSHKSRHEPN GMVLCAATSF WLPISPQNVF NFLKDERTRP QWDVLSNGNS VQEVAHITNG SNPGNCISVL RGFNASSSQN NMLILQESCI DSSSAALVIY
601: TPVDLPALNI AMSGQDTSYI PILPSGFAIS PDGSSKGGGS LITVGFQIMV SGLQPAKLNM ESMETVNNLI NTTVHQIKTT LNCPSTA
Arabidopsis Description
HDG12Uncharacterized protein At1g17920 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUW2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.