Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G168700.1 | Wheat | nucleus | 95.89 | 95.63 |
| TraesCS7A01G167900.1 | Wheat | nucleus | 94.52 | 95.17 |
| Os06t0208100-00 | Rice | nucleus | 15.75 | 89.15 |
| HORVU7Hr1G035230.2 | Barley | nucleus | 77.26 | 75.81 |
| Zm00001d044973_P001 | Maize | nucleus | 65.48 | 69.38 |
| Zm00001d037140_P004 | Maize | nucleus | 65.07 | 69.14 |
| EER89393 | Sorghum | nucleus | 65.89 | 68.71 |
| TraesCS6B01G354900.3 | Wheat | nucleus | 62.88 | 65.85 |
| Os06t0207966-00 | Rice | plastid | 22.47 | 62.36 |
| GSMUA_Achr10P... | Banana | nucleus | 53.29 | 54.71 |
| VIT_17s0053g00780.t01 | Wine grape | nucleus | 52.47 | 53.94 |
| KRH09477 | Soybean | nucleus | 52.88 | 53.76 |
| KRH38939 | Soybean | nucleus | 53.15 | 53.74 |
| GSMUA_Achr6P05990_001 | Banana | nucleus | 44.11 | 53.4 |
| GSMUA_Achr2P15140_001 | Banana | nucleus | 52.88 | 52.23 |
| GSMUA_Achr7P11310_001 | Banana | nucleus | 52.05 | 51.63 |
| Solyc03g098200.2.1 | Tomato | nucleus | 50.96 | 51.59 |
| KRH60596 | Soybean | nucleus | 49.86 | 51.05 |
| KRH41898 | Soybean | nucleus | 50.27 | 50.9 |
| PGSC0003DMT400069312 | Potato | nucleus | 49.45 | 50.49 |
| CDX96744 | Canola | nucleus | 46.03 | 49.93 |
| Solyc06g072310.2.1 | Tomato | nucleus | 48.77 | 49.65 |
| Bra016578.1-P | Field mustard | nucleus | 46.16 | 49.27 |
| CDX83884 | Canola | nucleus | 45.62 | 48.61 |
| AT1G17920.1 | Thale cress | nucleus | 45.48 | 48.33 |
| TraesCS7B01G072800.1 | Wheat | nucleus | 9.73 | 48.3 |
| GSMUA_Achr10P... | Banana | nucleus | 45.07 | 48.24 |
| CDY42097 | Canola | nucleus | 33.84 | 47.78 |
| CDY19185 | Canola | nucleus | 44.25 | 47.36 |
| CDY26204 | Canola | nucleus | 41.23 | 47.25 |
| CDX68229 | Canola | nucleus | 45.34 | 47.08 |
| Bra003846.1-P | Field mustard | nucleus | 45.34 | 46.95 |
| AT1G73360.1 | Thale cress | nucleus | 46.16 | 46.68 |
| CDY26205 | Canola | nucleus | 44.11 | 46.67 |
| Bra025938.1-P | Field mustard | nucleus | 44.11 | 46.4 |
| CDX96471 | Canola | nucleus | 45.48 | 46.24 |
| CDY11109 | Canola | nucleus | 44.79 | 46.06 |
| Bra015996.1-P | Field mustard | nucleus | 45.21 | 46.03 |
| CDX72984 | Canola | nucleus | 44.93 | 45.87 |
| VIT_04s0079g00480.t01 | Wine grape | nucleus | 43.97 | 44.96 |
| KRH11810 | Soybean | nucleus | 38.9 | 39.83 |
| KRH36827 | Soybean | nucleus | 38.49 | 39.63 |
| Solyc09g057530.1.1 | Tomato | cytosol | 7.4 | 39.42 |
| TraesCS7B01G208600.1 | Wheat | nucleus | 42.88 | 39.22 |
| TraesCS2B01G497500.1 | Wheat | nucleus | 41.23 | 38.84 |
| Solyc07g026570.1.1 | Tomato | nucleus | 7.26 | 37.59 |
| TraesCS6B01G269700.1 | Wheat | nucleus | 41.37 | 37.56 |
| CDY42301 | Canola | nucleus | 34.93 | 36.96 |
| AT3G03260.1 | Thale cress | nucleus | 35.34 | 36.91 |
| Bra020066.1-P | Field mustard | nucleus | 34.38 | 36.8 |
| Bra032003.1-P | Field mustard | nucleus | 34.52 | 36.57 |
| CDY43137 | Canola | nucleus | 34.25 | 36.28 |
| CDY67945 | Canola | nucleus | 34.11 | 36.14 |
| CDX85461 | Canola | cytosol | 34.25 | 35.46 |
| CDY44946 | Canola | nucleus | 31.37 | 35.34 |
| Bra023611.1-P | Field mustard | nucleus | 34.11 | 35.32 |
| AT1G34650.1 | Thale cress | nucleus | 33.84 | 34.89 |
| Solyc09g066070.2.1 | Tomato | cytosol | 20.55 | 34.8 |
| PGSC0003DMT400085057 | Potato | cytosol | 22.47 | 34.31 |
| CDY49937 | Canola | nucleus | 32.6 | 34.29 |
| CDY53691 | Canola | nucleus | 33.29 | 34.23 |
| Bra003213.1-P | Field mustard | nucleus | 33.15 | 34.08 |
| CDY21211 | Canola | nucleus | 32.33 | 34.01 |
| Bra021363.1-P | Field mustard | nucleus | 33.84 | 33.98 |
| CDY62389 | Canola | cytosol | 22.74 | 33.95 |
| PGSC0003DMT400034503 | Potato | cytosol, nucleus | 31.64 | 33.92 |
| Solyc11g011940.1.1 | Tomato | nucleus | 33.29 | 33.89 |
| AT5G17320.1 | Thale cress | nucleus | 33.29 | 33.84 |
| TraesCS2B01G419200.1 | Wheat | nucleus | 36.16 | 33.63 |
| TraesCS5B01G315100.2 | Wheat | nucleus | 39.04 | 33.53 |
| Solyc10g018030.1.1 | Tomato | cytosol | 18.9 | 33.41 |
| CDY02713 | Canola | nucleus | 33.7 | 33.29 |
| KRH36826 | Soybean | nucleus | 32.47 | 33.24 |
| Solyc09g066030.1.1 | Tomato | nucleus | 32.88 | 33.2 |
| Solyc04g025490.1.1 | Tomato | cytosol | 10.96 | 33.06 |
| TraesCS1B01G208400.1 | Wheat | nucleus | 40.14 | 32.92 |
| Bra008562.1-P | Field mustard | cytosol, nucleus, plastid | 32.6 | 32.92 |
| Solyc09g060140.2.1 | Tomato | mitochondrion | 16.58 | 32.88 |
| Solyc10g018020.1.1 | Tomato | extracellular | 15.07 | 32.74 |
| Solyc09g057540.2.1 | Tomato | cytosol | 21.92 | 32.19 |
| PGSC0003DMT400051268 | Potato | cytosol | 21.92 | 32.06 |
| Solyc09g060170.1.1 | Tomato | cytosol | 15.07 | 31.98 |
| CDY16938 | Canola | nucleus | 28.9 | 31.97 |
| PGSC0003DMT400051266 | Potato | cytosol | 16.99 | 31.88 |
| Solyc08g062510.2.1 | Tomato | nucleus | 28.36 | 31.7 |
| CDY69499 | Canola | cytosol | 13.15 | 31.58 |
| Solyc09g066050.2.1 | Tomato | cytosol | 23.84 | 31.46 |
| KRH42428 | Soybean | nucleus | 32.6 | 31.44 |
| PGSC0003DMT400038820 | Potato | extracellular | 15.62 | 31.32 |
| Solyc10g018000.1.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 29.59 | 30.9 |
| TraesCS3B01G331200.1 | Wheat | nucleus | 31.92 | 30.86 |
| Solyc07g026560.1.1 | Tomato | cytosol | 19.86 | 30.66 |
| Solyc05g015030.1.1 | Tomato | cytosol | 19.86 | 30.59 |
| Solyc09g060130.1.1 | Tomato | cytosol | 18.49 | 30.41 |
| PGSC0003DMT400036411 | Potato | nucleus | 21.37 | 29.71 |
| Solyc07g037910.1.1 | Tomato | cytosol | 8.49 | 29.38 |
| Solyc04g025480.1.1 | Tomato | cytosol | 25.89 | 28.86 |
| Solyc11g022420.1.1 | Tomato | cytosol | 18.77 | 28.6 |
| Solyc08g062520.2.1 | Tomato | cytosol | 20.0 | 28.57 |
| TraesCS1B01G045500.1 | Wheat | nucleus | 8.49 | 28.44 |
| TraesCS4B01G227900.1 | Wheat | nucleus | 8.49 | 27.8 |
| KRH42429 | Soybean | cytosol | 27.67 | 27.67 |
| TraesCS3B01G138400.1 | Wheat | nucleus | 7.95 | 26.98 |
| TraesCS3B01G138600.1 | Wheat | nucleus | 7.81 | 26.51 |
| TraesCS4B01G084700.16 | Wheat | extracellular, golgi | 29.45 | 26.51 |
| TraesCS3B01G354900.1 | Wheat | nucleus | 24.79 | 26.5 |
| TraesCS3B01G138800.1 | Wheat | nucleus | 6.58 | 25.4 |
| TraesCS5B01G330300.1 | Wheat | nucleus | 25.75 | 25.03 |
| Bra007562.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 9.59 | 24.48 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom |
| InterPro:IPR001356 | InterPro:IPR002913 | PFAM:PF00046 | PFAM:PF01852 | ScanProsite:PS00027 | PFscan:PS50071 |
| PFscan:PS50848 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF490 | SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 |
| SUPFAM:SSF55961 | InterPro:START_lipid-bd_dom | EnsemblPlantsGene:TraesCS7B01G072700 | EnsemblPlants:TraesCS7B01G072700.1 | TIGR:cd00086 | TIGR:cd08875 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr7B:-:80658897..80662738
Molecular Weight (calculated)
79518.1 Da
IEP (calculated)
6.630
GRAVY (calculated)
-0.315
Length
730 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFGDDQEGG SESNHHQQQQ QNQNQRRKRY HRHTPRQIQT LEAMFKECPH PDEAQRANLS RELGLEARQI KFWFQNRRTQ MKAQHERQDN CFLRQENDKI
101: RCENIAMREA LKNVICPTCG GPPIAEDYFD EQKLRMENAR LKQELDQVAG LTAKYLGRPF TQLPQGTPQM NVSSLDLSMG GVPIGGVPMG GGHHQPFCGG
201: GLSLDLDLSG AGLGMPLSDM PTMHLPAPVT EKERPLLAKM ATRAMDELIR LTQQGENVWV KIPGGDGREI IDVQAYDSIY SKPGSSNLRA GDIRVEGSRD
301: SAIVCMNPVC LVEVFMDPSK FMEFFPSIVS HARITDPLVN GLNGRSESLV MMYEQLHFTT PAVPTREFSF LRYCRQIDQG MWAIADVSAD MQREVHYGGP
401: PSRSRRLPSG CLISEMTNGY SRVTWVEHME IEDKSPIGPL YRDIVQSGAA FGAHRWVAAL HRACERYASS VEVPGVMHGE TTGVTAEGRR SMMALSQRMV
501: SSFCGGMTAS PQHQWTTMPG AGGSEVCVRV SMNQGSQPGQ PNGVVLGAAT SVWLPVPADH VFGFLRDENT RTQWDVLCKE NSVQPVSRIP NGPNPGNCIT
601: LLRALGPSQS PQGGQATILV LQESCTDTSG CSMVVHSPID IPAANMMMSG ADPSGIPLLP SGFAIWPAGV GGGASTSAAT PMAAGCIVSV AFQILISSLP
701: SSKLNAESIA TVNNLVSTTV QNIKTALNCA
101: RCENIAMREA LKNVICPTCG GPPIAEDYFD EQKLRMENAR LKQELDQVAG LTAKYLGRPF TQLPQGTPQM NVSSLDLSMG GVPIGGVPMG GGHHQPFCGG
201: GLSLDLDLSG AGLGMPLSDM PTMHLPAPVT EKERPLLAKM ATRAMDELIR LTQQGENVWV KIPGGDGREI IDVQAYDSIY SKPGSSNLRA GDIRVEGSRD
301: SAIVCMNPVC LVEVFMDPSK FMEFFPSIVS HARITDPLVN GLNGRSESLV MMYEQLHFTT PAVPTREFSF LRYCRQIDQG MWAIADVSAD MQREVHYGGP
401: PSRSRRLPSG CLISEMTNGY SRVTWVEHME IEDKSPIGPL YRDIVQSGAA FGAHRWVAAL HRACERYASS VEVPGVMHGE TTGVTAEGRR SMMALSQRMV
501: SSFCGGMTAS PQHQWTTMPG AGGSEVCVRV SMNQGSQPGQ PNGVVLGAAT SVWLPVPADH VFGFLRDENT RTQWDVLCKE NSVQPVSRIP NGPNPGNCIT
601: LLRALGPSQS PQGGQATILV LQESCTDTSG CSMVVHSPID IPAANMMMSG ADPSGIPLLP SGFAIWPAGV GGGASTSAAT PMAAGCIVSV AFQILISSLP
701: SSKLNAESIA TVNNLVSTTV QNIKTALNCA
001: MEFLGDSQNH DSSETEKKNK KKKRFHRHTP HQIQRLESTF NECQHPDEKQ RNQLSRELGL APRQIKFWFQ NRRTQKKAQH ERADNCALKE ENDKIRCENI
101: AIREAIKHAI CPSCGDSPVN EDSYFDEQKL RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS SMSVPSLPSQ
201: PNLVLSEMDK SLMTNIAVTA MEELLRLLQT NEPLWIKTDG CRDVLNLENY ENMFTRSSTS GGKKNNLGME ASRSSGVVFT NAITLVDMLM NSVKLTELFP
301: SIVASSKTLA VISSGLRGNH GDALHLMIEE LQVLSPLVTT REFCVLRYCQ QIEHGTWAIV NVSYEFPQFI SQSRSYRFPS GCLIQDMSNG YSKVTWVEHG
401: EFEEQEPIHE MFKDIVHKGL AFGAERWIAT LQRMCERFTN LLEPATSSLD LGGVIPSPEG KRSIMRLAHR MVSNFCLSVG TSNNTRSTVV SGLDEFGIRV
501: TSHKSRHEPN GMVLCAATSF WLPISPQNVF NFLKDERTRP QWDVLSNGNS VQEVAHITNG SNPGNCISVL RGFNASSSQN NMLILQESCI DSSSAALVIY
601: TPVDLPALNI AMSGQDTSYI PILPSGFAIS PDGSSKGGGS LITVGFQIMV SGLQPAKLNM ESMETVNNLI NTTVHQIKTT LNCPSTA
101: AIREAIKHAI CPSCGDSPVN EDSYFDEQKL RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS SMSVPSLPSQ
201: PNLVLSEMDK SLMTNIAVTA MEELLRLLQT NEPLWIKTDG CRDVLNLENY ENMFTRSSTS GGKKNNLGME ASRSSGVVFT NAITLVDMLM NSVKLTELFP
301: SIVASSKTLA VISSGLRGNH GDALHLMIEE LQVLSPLVTT REFCVLRYCQ QIEHGTWAIV NVSYEFPQFI SQSRSYRFPS GCLIQDMSNG YSKVTWVEHG
401: EFEEQEPIHE MFKDIVHKGL AFGAERWIAT LQRMCERFTN LLEPATSSLD LGGVIPSPEG KRSIMRLAHR MVSNFCLSVG TSNNTRSTVV SGLDEFGIRV
501: TSHKSRHEPN GMVLCAATSF WLPISPQNVF NFLKDERTRP QWDVLSNGNS VQEVAHITNG SNPGNCISVL RGFNASSSQN NMLILQESCI DSSSAALVIY
601: TPVDLPALNI AMSGQDTSYI PILPSGFAIS PDGSSKGGGS LITVGFQIMV SGLQPAKLNM ESMETVNNLI NTTVHQIKTT LNCPSTA
Arabidopsis Description
HDG12Uncharacterized protein At1g17920 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUW2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.