Factsheet for TraesCS3B01G138600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G121500.1	Wheat	nucleus	88.37	85.2
TraesCS3B01G138800.1	Wheat	nucleus	71.63	81.48
TraesCS1B01G045500.1	Wheat	nucleus	62.33	61.47
TraesCS4B01G227900.1	Wheat	nucleus	62.79	60.54
TraesCS3B01G138400.1	Wheat	nucleus	57.21	57.21
TraesCS7B01G072800.1	Wheat	nucleus	19.07	27.89
TraesCS6B01G269700.1	Wheat	nucleus	32.09	8.58
TraesCS6B01G354900.3	Wheat	nucleus	26.98	8.32
TraesCS5B01G330300.1	Wheat	nucleus	28.84	8.26
TraesCS5B01G315100.2	Wheat	nucleus	32.09	8.12
TraesCS4B01G084700.16	Wheat	extracellular, golgi	29.77	7.89
TraesCS2B01G497500.1	Wheat	nucleus	28.37	7.87
TraesCS7B01G072700.1	Wheat	nucleus	26.51	7.81
TraesCS7B01G208600.1	Wheat	nucleus	28.84	7.77
TraesCS3B01G331200.1	Wheat	nucleus	25.12	7.15
TraesCS2B01G419200.1	Wheat	nucleus	26.05	7.13
TraesCS1B01G208400.1	Wheat	nucleus	27.44	6.63
TraesCS3B01G354900.1	Wheat	nucleus	20.47	6.44
Solyc11g022410.1.1	Tomato	extracellular	0.47	1.35

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356
PFAM:PF00046	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF320	SMART:SM00389
SUPFAM:SSF46689	EnsemblPlantsGene:TraesCS3B01G138600	EnsemblPlants:TraesCS3B01G138600.1	TIGR:cd00086	SEG:seg	:

Description

No Description!

Coordinates

chr3B:-:124550195..124551168

Molecular Weight (calculated)

24930.2 Da

IEP (calculated)

6.516

GRAVY (calculated)

-1.121

Length

215 amino acids

Sequence
(BLAST)

001: MDGELPEYDS DVQNMLDHFI TSEQGHLPPH EHGDEMHDLL GATTNMGNTD DANAAAADKG NNNDEETNHV QRMVTRRANY NRLRGEQIQQ LEAVFQKSPY
101: PDAELRKDLS ERLHMSALQV KFWFQNKRSS SKGKRQLQDT KNLQGENQML KDENQAIKWV VENKTCLKCA GVRLKTQDTS EHQRLCTENM RLKEELRRAT
201: AYLKELSMRP QFTRD

Best Arabidopsis Sequence Match ( AT4G21750.1 )
(BLAST)

001: MYHPNMFESH HHMFDMTPKN SENDLGITGS HEEDFETKSG AEVTMENPLE EELQDPNQRP NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRELS
101: LEPLQVKFWF QNKRTQMKAQ HERHENQILK SENDKLRAEN NRYKDALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE EIDRISAIAA KYVGKPLMAN
201: SSSFPQLSSS HHIPSRSLDL EVGNFGNNNN SHTGFVGEMF GSSDILRSVS IPSEADKPMI VELAVAAMEE LVRMAQTGDP LWVSSDNSVE ILNEEEYFRT
301: FPRGIGPKPI GLRSEASRES TVVIMNHINL IEILMDVNQW SSVFCGIVSR ALTLEVLSTG VAGNYNGALQ VMTAEFQVPS PLVPTRENYF VRYCKQHSDG
401: IWAVVDVSLD SLRPSPITRS RRRPSGCLIQ ELQNGYSKVT WVEHIEVDDR SVHNMYKPLV NTGLAFGAKR WVATLDRQCE RLASSMASNI PACDLSVITS
501: PEGRKSMLKL AERMVMSFCT GVGASTAHAW TTLSTTGSDD VRVMTRKSMD DPGRPPGIVL SAATSFWIPV APKRVFDFLR DENSRSEWDI LSNGGLVQEM
601: AHIANGRDPG NSVSLLRVNS GNSGQSNMLI LQESCTDASG SYVIYAPVDI IAMNVVLSGG DPDYVALLPS GFAILPDGSA RGGGGSANAS AGAGVEGGGE
701: GNNLEVVTTT GSCGGSLLTV AFQILVDSVP TAKLSLGSVA TVNSLIKCTV ERIKAALACD GA

Arabidopsis Description

ATML1ATML1 [Source:UniProtKB/TrEMBL;Acc:A0A178UZ61]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.