Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G335900.1 | Wheat | nucleus | 94.01 | 93.76 |
| TraesCS5A01G330200.1 | Wheat | nucleus | 86.55 | 87.37 |
| HORVU5Hr1G083940.3 | Barley | nucleus | 76.56 | 74.1 |
| Zm00001d019477_P001 | Maize | nucleus | 37.42 | 38.18 |
| EER98409 | Sorghum | nucleus | 35.82 | 36.85 |
| Zm00001d004234_P001 | Maize | nucleus | 33.29 | 35.36 |
| OQU81266 | Sorghum | nucleus | 35.69 | 34.85 |
| OQU81174 | Sorghum | nucleus | 34.09 | 34.69 |
| TraesCS4B01G084700.16 | Wheat | extracellular, golgi | 36.48 | 33.79 |
| TraesCS7B01G072800.1 | Wheat | nucleus | 6.39 | 32.65 |
| TraesCS1B01G045500.1 | Wheat | nucleus | 9.45 | 32.57 |
| TraesCS4B01G227900.1 | Wheat | nucleus | 8.92 | 30.04 |
| Zm00001d004230_P030 | Maize | nucleus | 32.36 | 29.85 |
| TraesCS5B01G315100.2 | Wheat | nucleus | 33.56 | 29.65 |
| TraesCS6B01G354900.3 | Wheat | nucleus | 26.76 | 28.84 |
| TraesCS3B01G138600.1 | Wheat | nucleus | 8.26 | 28.84 |
| TraesCS2B01G497500.1 | Wheat | nucleus | 29.69 | 28.77 |
| TraesCS6B01G269700.1 | Wheat | nucleus | 30.63 | 28.61 |
| TraesCS7B01G208600.1 | Wheat | nucleus | 29.96 | 28.2 |
| TraesCS2B01G419200.1 | Wheat | nucleus | 29.43 | 28.15 |
| TraesCS3B01G138400.1 | Wheat | nucleus | 7.99 | 27.91 |
| TraesCS3B01G138800.1 | Wheat | nucleus | 6.79 | 26.98 |
| TraesCS3B01G331200.1 | Wheat | nucleus | 26.9 | 26.75 |
| Os08t0292000-01 | Rice | nucleus | 28.1 | 26.68 |
| TraesCS7B01G072700.1 | Wheat | nucleus | 25.03 | 25.75 |
| TraesCS3B01G354900.1 | Wheat | nucleus | 21.84 | 24.01 |
| TraesCS1B01G208400.1 | Wheat | nucleus | 25.83 | 21.8 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom |
| InterPro:IPR001356 | InterPro:IPR002913 | PFAM:PF00046 | PFAM:PF01852 | ScanProsite:PS00027 | PFscan:PS50071 |
| PFscan:PS50848 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF484 | SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 |
| SUPFAM:SSF55961 | InterPro:START_lipid-bd_dom | EnsemblPlantsGene:TraesCS5B01G330300 | EnsemblPlants:TraesCS5B01G330300.1 | TIGR:cd00086 | TIGR:cd08875 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr5B:-:514678511..514683625
Molecular Weight (calculated)
81670.8 Da
IEP (calculated)
6.426
GRAVY (calculated)
-0.296
Length
751 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGEWPEQFS ELYNWLVLGC SGGDNHVIQP DLGAEVNGLP GAAANMGNNT NAAAADQGNG GGQANGDQRA GTRHFRRRHT VAQIQILEAA YQEGRHPDEK
101: RRLELSRRTG LSPTQVQIWF QNRRNSGKSK AQQKETEEFQ EENGRLQAEK QALMSALQNR LCITCRGEDT PERQRLYAEN VMLKDAHMRI ADYLKNVSGG
201: RLQVMNHTVV DTHAPLTLTA PNPVMIPDEG VARDNPETNG NTLVVQHVAC AMEELKVLAG LGAPLWSLAE GGEVEVINYK EYMKMMFPNE RHEMEFCAEA
301: TRKTGIISCT ATDLVGILMN ADWWSQTFPG IVASATTSKI ITPGDSGDGL VQLMSAELRV LSPRVPVRKI NFIRRCQKIA ENTWVVVDVS VDGIRDQDGA
401: PSTYTACKLQ PSGCHIQELN NGHCQVTWIV NMAHDEATVP PLHHPLFRSG WALGACRWIA SLQRRCDYIA SLHTNPVLTL NTRSGGVAPI TPEGRKSVLE
501: VAHRMTLKFY EAICGPGTQP WTSVDERRGS CGVGAERFEV DVRVVTFPVG TTGATVLRAT TTVWLPGTPA QRVFNYLCDG DRRTEWDIGA NRTSTIRQEG
601: SFSTGQLDGN SVSLLRTIAS NGAYGKLFLQ ESCIDASCMV LAYAPIDDQT IQDVINGTHT SFSLLPSGVV VLPDGNAEPG APSTSAMCSS SSSAGHRSNS
701: GSLVSTMYQT LLSGQPPEHL FKAVAENVGN LLCQAIDKIK SGVHANVVLA A
101: RRLELSRRTG LSPTQVQIWF QNRRNSGKSK AQQKETEEFQ EENGRLQAEK QALMSALQNR LCITCRGEDT PERQRLYAEN VMLKDAHMRI ADYLKNVSGG
201: RLQVMNHTVV DTHAPLTLTA PNPVMIPDEG VARDNPETNG NTLVVQHVAC AMEELKVLAG LGAPLWSLAE GGEVEVINYK EYMKMMFPNE RHEMEFCAEA
301: TRKTGIISCT ATDLVGILMN ADWWSQTFPG IVASATTSKI ITPGDSGDGL VQLMSAELRV LSPRVPVRKI NFIRRCQKIA ENTWVVVDVS VDGIRDQDGA
401: PSTYTACKLQ PSGCHIQELN NGHCQVTWIV NMAHDEATVP PLHHPLFRSG WALGACRWIA SLQRRCDYIA SLHTNPVLTL NTRSGGVAPI TPEGRKSVLE
501: VAHRMTLKFY EAICGPGTQP WTSVDERRGS CGVGAERFEV DVRVVTFPVG TTGATVLRAT TTVWLPGTPA QRVFNYLCDG DRRTEWDIGA NRTSTIRQEG
601: SFSTGQLDGN SVSLLRTIAS NGAYGKLFLQ ESCIDASCMV LAYAPIDDQT IQDVINGTHT SFSLLPSGVV VLPDGNAEPG APSTSAMCSS SSSAGHRSNS
701: GSLVSTMYQT LLSGQPPEHL FKAVAENVGN LLCQAIDKIK SGVHANVVLA A
001: MNFNGFLDDG AGASKLLSDA PYNNHFSFSA VDTMLGSAAI APSQSLPFSS SGLSLGLQTN GEMSRNGEIM ESNVSRKSSR GEDVESRSES DNAEAVSGDD
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST
Arabidopsis Description
HDG1HDG1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5Q4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.