Factsheet for TraesCS1B01G045500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G150000.1	Wheat	nucleus	92.66	92.66
HORVU1Hr1G005430.1	Barley	nucleus	75.23	75.23
TraesCS4B01G227900.1	Wheat	nucleus	65.14	63.68
TraesCS3B01G138800.1	Wheat	nucleus	54.59	62.96
TraesCS3B01G138400.1	Wheat	nucleus	61.47	62.33
TraesCS3B01G138600.1	Wheat	nucleus	61.47	62.33
TraesCS7B01G072800.1	Wheat	nucleus	22.02	32.65
TraesCS5B01G330300.1	Wheat	nucleus	32.57	9.45
TraesCS6B01G269700.1	Wheat	nucleus	34.4	9.33
TraesCS5B01G315100.2	Wheat	nucleus	35.32	9.06
TraesCS6B01G354900.3	Wheat	nucleus	28.44	8.9
TraesCS2B01G497500.1	Wheat	nucleus	30.28	8.52
TraesCS7B01G072700.1	Wheat	nucleus	28.44	8.49
TraesCS3B01G331200.1	Wheat	nucleus	28.44	8.21
TraesCS7B01G208600.1	Wheat	nucleus	29.82	8.15
TraesCS1B01G208400.1	Wheat	nucleus	31.65	7.75
TraesCS4B01G084700.16	Wheat	extracellular, golgi	27.98	7.52
TraesCS2B01G419200.1	Wheat	nucleus	27.06	7.52
TraesCS3B01G354900.1	Wheat	nucleus	22.02	7.03
Solyc11g022410.1.1	Tomato	extracellular	0.46	1.35

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	PFAM:PF00046
ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF320	SMART:SM00389	SUPFAM:SSF46689
EnsemblPlantsGene:TraesCS1B01G045500	EnsemblPlants:TraesCS1B01G045500.1	TIGR:cd00086	SEG:seg	:	:

Description

No Description!

Coordinates

chr1B:+:25473379..25475087

Molecular Weight (calculated)

25503.2 Da

IEP (calculated)

8.255

GRAVY (calculated)

-1.015

Length

218 amino acids

Sequence
(BLAST)

001: MDGEWPQYNS VVLNDLDPFM TSEHNHLLQH DHGDETYGLL GATANVGMID DTNVVAGNEG NNNGETYSQQ RMERRRTNYH RLRIEQIQQL EAVFREIPYP
101: DEKLRKTLSE RLGMSAQQVK FWFQNHRSNS KGKTQRRETN TLHLENQMLK SDRQAIMLAM ENSTCLKCRG AVVQTQDTSE RQRLFKENMK LKEELRLATT
201: HLKEGLQQNG MWPRLTRN

Best Arabidopsis Sequence Match ( AT1G73360.1 )
(BLAST)

001: MSFVVGVGGS GSGSGGDGGG SHHHDGSETD RKKKRYHRHT AQQIQRLESS FKECPHPDEK QRNQLSRELG LAPRQIKFWF QNRRTQLKAQ HERADNSALK
101: AENDKIRCEN IAIREALKHA ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP LDLSMTSLTG CGPFGHGPSL
201: DFDLLPGSSM AVGPNNNLQS QPNLAISDMD KPIMTGIALT AMEELLRLLQ TNEPLWTRTD GCRDILNLGS YENVFPRSSN RGKNQNFRVE ASRSSGIVFM
301: NAMALVDMFM DCVKWTELFP SIIAASKTLA VISSGMGGTH EGALHLLYEE MEVLSPLVAT REFCELRYCQ QTEQGSWIVV NVSYDLPQFV SHSQSYRFPS
401: GCLIQDMPNG YSKVTWVEHI ETEEKELVHE LYREIIHRGI AFGADRWVTT LQRMCERFAS LSVPASSSRD LGGVILSPEG KRSMMRLAQR MISNYCLSVS
501: RSNNTRSTVV SELNEVGIRV TAHKSPEPNG TVLCAATTFW LPNSPQNVFN FLKDERTRPQ WDVLSNGNAV QEVAHISNGS HPGNCISVLR GSNATHSNNM
601: LILQESSTDS SGAFVVYSPV DLAALNIAMS GEDPSYIPLL SSGFTISPDG NGSNSEQGGA STSSGRASAS GSLITVGFQI MVSNLPTAKL NMESVETVNN
701: LIGTTVHQIK TALSGPTAST TA

Arabidopsis Description

HDG11Homeobox-leucine zipper protein HDG11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX31]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.