Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G045500.1 | Wheat | nucleus | 75.23 | 75.23 |
| TraesCSU01G150000.1 | Wheat | nucleus | 73.39 | 73.39 |
| TraesCS1D01G037100.1 | Wheat | nucleus | 71.56 | 73.24 |
| TraesCSU01G244000.1 | Wheat | nucleus | 64.22 | 67.96 |
| HORVU3Hr1G022070.1 | Barley | nucleus | 53.67 | 61.9 |
| HORVU3Hr1G022160.1 | Barley | cytosol | 26.61 | 52.73 |
| HORVU3Hr1G022170.1 | Barley | cytosol | 23.85 | 43.7 |
| HORVU7Hr1G103010.2 | Barley | cytosol, mitochondrion, nucleus | 21.56 | 36.43 |
| HORVU0Hr1G006920.1 | Barley | nucleus | 15.14 | 33.33 |
| HORVU7Hr1G035250.1 | Barley | nucleus | 20.18 | 29.53 |
| HORVU7Hr1G103020.1 | Barley | nucleus | 22.94 | 24.88 |
| HORVU3Hr1G073290.1 | Barley | nucleus | 28.9 | 9.6 |
| HORVU6Hr1G065300.3 | Barley | nucleus | 34.4 | 9.38 |
| HORVU5Hr1G080700.2 | Barley | nucleus | 34.4 | 8.79 |
| HORVU7Hr1G073440.1 | Barley | nucleus | 30.28 | 8.29 |
| HORVU7Hr1G073450.1 | Barley | mitochondrion, nucleus | 30.28 | 8.29 |
| HORVU6Hr1G079410.6 | Barley | nucleus | 27.06 | 8.14 |
| HORVU5Hr1G083940.3 | Barley | nucleus | 28.44 | 7.99 |
| HORVU2Hr1G106970.2 | Barley | nucleus, plastid | 28.44 | 7.98 |
| HORVU3Hr1G077690.1 | Barley | nucleus | 24.31 | 7.9 |
| HORVU7Hr1G035230.2 | Barley | nucleus | 25.69 | 7.53 |
| HORVU1Hr1G050620.2 | Barley | nucleus | 30.28 | 7.46 |
| HORVU2Hr1G095210.1 | Barley | nucleus | 26.61 | 7.44 |
| HORVU3Hr1G108430.1 | Barley | cytosol | 8.26 | 5.41 |
| HORVU7Hr1G036950.2 | Barley | cytosol | 2.75 | 3.28 |
| HORVU0Hr1G013510.1 | Barley | cytosol | 1.38 | 2.16 |
| Solyc11g022410.1.1 | Tomato | extracellular | 0.46 | 1.35 |
| HORVU4Hr1G062510.2 | Barley | cytosol | 0.92 | 0.72 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | UniProt:A0A287EIV8 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| EnsemblPlantsGene:HORVU1Hr1G005430 | EnsemblPlants:HORVU1Hr1G005430.1 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:IPR001356 | PFAM:PF00046 |
| PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF343 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI000B4676D3 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr1H:-:11822459..11824892
Molecular Weight (calculated)
25465.3 Da
IEP (calculated)
8.518
GRAVY (calculated)
-0.878
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: MNGEWPQHNS DVHNDLDLFM TSEHSRLFQH DHGDEIYGLL GATSNAGNID NANNVVVDQG NNIGETHSEQ RMMRRRAHYH RLRGEQLQQL EVVFQEFPYP
101: NEKLRKTLGE RLGMSAQQVK FWFQNHRTSC KGKRQRREIN NLHLENEMLK SERQAIISAM QNSTCLKCRG AMVQSSDISE RQRLFIENMK LKEELLLATT
201: HLKDGLHRNG MWSLLTRN
101: NEKLRKTLGE RLGMSAQQVK FWFQNHRTSC KGKRQRREIN NLHLENEMLK SERQAIISAM QNSTCLKCRG AMVQSSDISE RQRLFIENMK LKEELLLATT
201: HLKDGLHRNG MWSLLTRN
001: MSFVVGVGGS GSGSGGDGGG SHHHDGSETD RKKKRYHRHT AQQIQRLESS FKECPHPDEK QRNQLSRELG LAPRQIKFWF QNRRTQLKAQ HERADNSALK
101: AENDKIRCEN IAIREALKHA ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP LDLSMTSLTG CGPFGHGPSL
201: DFDLLPGSSM AVGPNNNLQS QPNLAISDMD KPIMTGIALT AMEELLRLLQ TNEPLWTRTD GCRDILNLGS YENVFPRSSN RGKNQNFRVE ASRSSGIVFM
301: NAMALVDMFM DCVKWTELFP SIIAASKTLA VISSGMGGTH EGALHLLYEE MEVLSPLVAT REFCELRYCQ QTEQGSWIVV NVSYDLPQFV SHSQSYRFPS
401: GCLIQDMPNG YSKVTWVEHI ETEEKELVHE LYREIIHRGI AFGADRWVTT LQRMCERFAS LSVPASSSRD LGGVILSPEG KRSMMRLAQR MISNYCLSVS
501: RSNNTRSTVV SELNEVGIRV TAHKSPEPNG TVLCAATTFW LPNSPQNVFN FLKDERTRPQ WDVLSNGNAV QEVAHISNGS HPGNCISVLR GSNATHSNNM
601: LILQESSTDS SGAFVVYSPV DLAALNIAMS GEDPSYIPLL SSGFTISPDG NGSNSEQGGA STSSGRASAS GSLITVGFQI MVSNLPTAKL NMESVETVNN
701: LIGTTVHQIK TALSGPTAST TA
101: AENDKIRCEN IAIREALKHA ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP LDLSMTSLTG CGPFGHGPSL
201: DFDLLPGSSM AVGPNNNLQS QPNLAISDMD KPIMTGIALT AMEELLRLLQ TNEPLWTRTD GCRDILNLGS YENVFPRSSN RGKNQNFRVE ASRSSGIVFM
301: NAMALVDMFM DCVKWTELFP SIIAASKTLA VISSGMGGTH EGALHLLYEE MEVLSPLVAT REFCELRYCQ QTEQGSWIVV NVSYDLPQFV SHSQSYRFPS
401: GCLIQDMPNG YSKVTWVEHI ETEEKELVHE LYREIIHRGI AFGADRWVTT LQRMCERFAS LSVPASSSRD LGGVILSPEG KRSMMRLAQR MISNYCLSVS
501: RSNNTRSTVV SELNEVGIRV TAHKSPEPNG TVLCAATTFW LPNSPQNVFN FLKDERTRPQ WDVLSNGNAV QEVAHISNGS HPGNCISVLR GSNATHSNNM
601: LILQESSTDS SGAFVVYSPV DLAALNIAMS GEDPSYIPLL SSGFTISPDG NGSNSEQGGA STSSGRASAS GSLITVGFQI MVSNLPTAKL NMESVETVNN
701: LIGTTVHQIK TALSGPTAST TA
Arabidopsis Description
HDG11Homeobox-leucine zipper protein HDG11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX31]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.