Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G354900.1 | Wheat | nucleus | 84.95 | 83.46 |
| TraesCS3A01G325800.1 | Wheat | nucleus | 83.76 | 82.28 |
| TraesCS3D01G319200.1 | Wheat | nucleus | 82.86 | 81.41 |
| Os01t0788800-01 | Rice | nucleus | 46.5 | 49.6 |
| EES01587 | Sorghum | nucleus | 48.58 | 42.89 |
| Zm00001d043231_P001 | Maize | nucleus | 50.52 | 42.8 |
| HORVU7Hr1G103010.2 | Barley | cytosol, mitochondrion, nucleus | 6.86 | 35.66 |
| HORVU0Hr1G006920.1 | Barley | nucleus | 4.62 | 31.31 |
| HORVU7Hr1G103020.1 | Barley | nucleus | 8.94 | 29.85 |
| GSMUA_Achr7P00210_001 | Banana | nucleus | 29.51 | 29.16 |
| HORVU7Hr1G035250.1 | Barley | nucleus | 6.41 | 28.86 |
| HORVU0Hr1G013510.1 | Barley | cytosol | 5.96 | 28.78 |
| HORVU2Hr1G106970.2 | Barley | nucleus, plastid | 32.34 | 27.93 |
| HORVU6Hr1G079410.6 | Barley | nucleus | 29.81 | 27.59 |
| HORVU7Hr1G073440.1 | Barley | nucleus | 32.34 | 27.26 |
| HORVU6Hr1G065300.3 | Barley | nucleus | 31.59 | 26.5 |
| HORVU7Hr1G073450.1 | Barley | mitochondrion, nucleus | 30.85 | 26.0 |
| HORVU2Hr1G095210.1 | Barley | nucleus | 29.36 | 25.26 |
| HORVU5Hr1G080700.2 | Barley | nucleus | 31.45 | 24.74 |
| HORVU1Hr1G005430.1 | Barley | nucleus | 7.9 | 24.31 |
| HORVU3Hr1G073290.1 | Barley | nucleus | 23.55 | 24.09 |
| HORVU5Hr1G083940.3 | Barley | nucleus | 27.27 | 23.58 |
| HORVU4Hr1G062510.2 | Barley | cytosol | 9.69 | 23.47 |
| HORVU3Hr1G022070.1 | Barley | nucleus | 6.41 | 22.75 |
| HORVU7Hr1G036950.2 | Barley | cytosol | 6.11 | 22.4 |
| HORVU7Hr1G035230.2 | Barley | nucleus | 23.4 | 21.1 |
| HORVU1Hr1G050620.2 | Barley | nucleus | 26.38 | 20.0 |
| HORVU3Hr1G108430.1 | Barley | cytosol | 9.39 | 18.92 |
| HORVU3Hr1G022170.1 | Barley | cytosol | 3.13 | 17.65 |
| HORVU3Hr1G022160.1 | Barley | cytosol | 1.49 | 9.09 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | UniProt:A0A287LSR2 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | EnsemblPlantsGene:HORVU3Hr1G077690 | EnsemblPlants:HORVU3Hr1G077690.1 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS |
| InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR002913 | PFAM:PF00046 | PFAM:PF01852 | ScanProsite:PS00027 |
| PFscan:PS50071 | PFscan:PS50848 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF343 | SMART:SM00234 | SMART:SM00389 |
| SUPFAM:SSF46689 | SUPFAM:SSF55961 | InterPro:START_lipid-bd_dom | UniParc:UPI000B47E725 | SEG:seg | : |
Description
No Description!
Coordinates
chrchr3H:+:574433359..574438442
Molecular Weight (calculated)
73915.7 Da
IEP (calculated)
8.282
GRAVY (calculated)
-0.310
Length
671 amino acids
Sequence
(BLAST)
(BLAST)
001: MPGNRGGRRR KAGRRARDNE LDIPQSNSDG HDGAEGSQPK RRLQRLNPQQ TQVLEGFFSI CAHPDENQRM GLSESTGLSM QQVKFWFQNK RTYMKHLTGK
101: EESYRMKAQN EMLREENKRL ASAAKASFCP SCVALPGQNP SVEVQRLKEE NESLRQQVSQ LRAEAHQLDP STVNIIGREN DIDAIAELVQ NAMHEFVVLS
201: ESGGPLWMPV PGGSLDLLNK VVYAQTFGAR SSANAIGFRV EATRADGMVM MEAKQIVDYI MDSECYTSFC PGTLTSAKTT KIYKWPTNAG YNGAMHLMTA
301: ETVFPSPLVP SRKCTFVRCC RGMQNGTVII VDVSLDNGDG TFFKCRKMPS GLLIRSLNSD ASQVTVIEHV QVNDAGVHEL YRPTLSGLMF GARRWLSSIE
401: RQSARMRDLF LLTQSTSAAN MNGRKTLMKI ADDLLAGYAN GIAAVPGGGW TILRGAGTED DIRVTYRRKD DDDDTAVVSV CAAFRLPLPL RMAFDLLRNI
501: QLRPKWDVLV NGNSVREEVA VCKGVGGFDD VVSILHIKHN AENNENIMIL QNSGYDVSGA FMIYCPVDIQ LMNEIMSPSD MGESNKVSLY PTGFSLLPVD
601: DSALGLGEGG ATLVTAGYQI LLKLARGTGL YPRSVSTAVS LMTENIATIK KTLTNSHPIF YKKRQSPNNL G
101: EESYRMKAQN EMLREENKRL ASAAKASFCP SCVALPGQNP SVEVQRLKEE NESLRQQVSQ LRAEAHQLDP STVNIIGREN DIDAIAELVQ NAMHEFVVLS
201: ESGGPLWMPV PGGSLDLLNK VVYAQTFGAR SSANAIGFRV EATRADGMVM MEAKQIVDYI MDSECYTSFC PGTLTSAKTT KIYKWPTNAG YNGAMHLMTA
301: ETVFPSPLVP SRKCTFVRCC RGMQNGTVII VDVSLDNGDG TFFKCRKMPS GLLIRSLNSD ASQVTVIEHV QVNDAGVHEL YRPTLSGLMF GARRWLSSIE
401: RQSARMRDLF LLTQSTSAAN MNGRKTLMKI ADDLLAGYAN GIAAVPGGGW TILRGAGTED DIRVTYRRKD DDDDTAVVSV CAAFRLPLPL RMAFDLLRNI
501: QLRPKWDVLV NGNSVREEVA VCKGVGGFDD VVSILHIKHN AENNENIMIL QNSGYDVSGA FMIYCPVDIQ LMNEIMSPSD MGESNKVSLY PTGFSLLPVD
601: DSALGLGEGG ATLVTAGYQI LLKLARGTGL YPRSVSTAVS LMTENIATIK KTLTNSHPIF YKKRQSPNNL G
001: MFEPNMLLAA MNNADSNNHN YNHEDNNNEG FLRDDEFDSP NTKSGSENQE GGSGNDQDPL HPNKKKRYHR HTQLQIQEME AFFKECPHPD DKQRKQLSRE
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A
Arabidopsis Description
HDG2AT1G05230 protein [Source:UniProtKB/TrEMBL;Acc:B9DFH8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.