Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G077690.1 | Barley | nucleus | 49.6 | 46.5 |
| TraesCS3A01G325800.1 | Wheat | nucleus | 50.4 | 46.41 |
| TraesCS3B01G354900.1 | Wheat | nucleus | 50.24 | 46.27 |
| TraesCS3D01G319200.1 | Wheat | nucleus | 49.13 | 45.24 |
| EES01587 | Sorghum | nucleus | 49.13 | 40.66 |
| Zm00001d043231_P001 | Maize | nucleus | 50.4 | 40.03 |
| Os04t0627000-02 | Rice | cytosol, peroxisome | 29.89 | 32.08 |
| Os09t0526300-00 | Rice | nucleus | 6.36 | 30.53 |
| Os06t0207966-00 | Rice | plastid | 12.24 | 29.28 |
| GSMUA_Achr7P00210_001 | Banana | nucleus | 31.32 | 29.01 |
| Os06t0208100-00 | Rice | nucleus | 5.88 | 28.68 |
| Os08t0136100-01 | Rice | nucleus | 35.29 | 28.28 |
| Os01t0760800-00 | Rice | nucleus | 5.56 | 26.12 |
| Os02t0674800-01 | Rice | nucleus | 32.43 | 25.37 |
| Os04t0569100-01 | Rice | nucleus | 31.16 | 24.32 |
| Os08t0292000-01 | Rice | nucleus | 23.85 | 18.96 |
| Os10t0575600-01 | Rice | nucleus | 26.39 | 18.82 |
| Os08t0187500-01 | Rice | nucleus | 9.54 | 18.4 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | ProteinID:BAD53269.1 | ProteinID:BAD81955.1 | ProteinID:BAS74713.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008289 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS |
| InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR002913 | EnsemblPlantsGene:Os01g0788800 | EnsemblPlants:Os01t0788800-01 | PFAM:PF00046 |
| PFAM:PF01852 | ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS50848 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF343 |
| SMART:SM00234 | SUPFAM:SSF46689 | SUPFAM:SSF55961 | InterPro:START_lipid-bd_dom | UniParc:UPI0000446CCF | SEG:seg |
Description
TRANSCRIPTION FACTOR 1Similar to Isoform 2 of Homeobox-leucine zipper protein TF1. (Os01t0788800-01);Similar to Isoform 2 of Homeobox-leucine zipper protein TF1. (Os01t0788800-02);Similar to Isoform 2 of Homeobox-leucine zipper protein TF1. (Os01t0788800-03)
Coordinates
chr1:+:33474895..33478422
Molecular Weight (calculated)
69497.7 Da
IEP (calculated)
7.962
GRAVY (calculated)
-0.156
Length
629 amino acids
Sequence
(BLAST)
(BLAST)
001: MNRFFSICGH PDDGQKRHLS ETTGLGLDQV KFWFQNKRTQ VKTMCWKEEN YKLSVENEIL RDENRRVKIA HCTAVCLTCC NSSVQNQLAV EMERLMGQSE
101: WLQQEIARSN GTPPAANLAF QLNSSADYVF SGQHDQQMIA ELAKNAMHAL IILAESHVAL WFPVPGCSYE VLNKMAYDQA YPGDNSANAI GFKTEATRAV
201: SMVMMDYKSV VDFLMDPYNY RTFFPEVISG AVTNRIYTWP TSDGYNGVIQ LMTVEMMFPS PLVPARKCTF LRYCNVLNEG LVVVIDVSLD DGSIFSKCRK
301: MPSGFLIQSI RPNSCKVTAI EHVLADDTGV HELYQPCMNG LVFGARRWVA TMARQSARMR DVHHNKTAPQ VSTKGRKNLM KLADDLLASF AGGIAATGGG
401: TWTVVIGAGT EKDIRVAYRR TTEGSSSYNA ILSVTASLRL PLPMRKTFDL LRNLTHRCKW DVLVHGSVVK EEVTIARGVG NDDTVTVLHC KRAGREDRGR
501: TMILQNNGYD ASGSFMVYSQ IDSELMNTMV LSPSDLPPGR GGPSLYPTGF SLLPDVEAAQ DSSGIALGEV GGTLMTMGFQ IPVKLASGDR MYSRSAASAI
601: RLMTDTIALV KKTLMNEHSG IYGVSPFHP
101: WLQQEIARSN GTPPAANLAF QLNSSADYVF SGQHDQQMIA ELAKNAMHAL IILAESHVAL WFPVPGCSYE VLNKMAYDQA YPGDNSANAI GFKTEATRAV
201: SMVMMDYKSV VDFLMDPYNY RTFFPEVISG AVTNRIYTWP TSDGYNGVIQ LMTVEMMFPS PLVPARKCTF LRYCNVLNEG LVVVIDVSLD DGSIFSKCRK
301: MPSGFLIQSI RPNSCKVTAI EHVLADDTGV HELYQPCMNG LVFGARRWVA TMARQSARMR DVHHNKTAPQ VSTKGRKNLM KLADDLLASF AGGIAATGGG
401: TWTVVIGAGT EKDIRVAYRR TTEGSSSYNA ILSVTASLRL PLPMRKTFDL LRNLTHRCKW DVLVHGSVVK EEVTIARGVG NDDTVTVLHC KRAGREDRGR
501: TMILQNNGYD ASGSFMVYSQ IDSELMNTMV LSPSDLPPGR GGPSLYPTGF SLLPDVEAAQ DSSGIALGEV GGTLMTMGFQ IPVKLASGDR MYSRSAASAI
601: RLMTDTIALV KKTLMNEHSG IYGVSPFHP
001: MYHPNMFESH HMFDMTPKST SDNDLGITGS REDDFETKSG TEVTTENPSG EELQDPSQRP NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRDLN
101: LEPLQVKFWF QNKRTQMKAQ SERHENQILK SDNDKLRAEN NRYKEALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE EIDRISAIAA KYVGKPLGSS
201: FAPLAIHAPS RSLDLEVGNF GNQTGFVGEM YGTGDILRSV SIPSETDKPI IVELAVAAME ELVRMAQTGD PLWLSTDNSV EILNEEEYFR TFPRGIGPKP
301: LGLRSEASRQ SAVVIMNHIN LVEILMDVNQ WSCVFSGIVS RALTLEVLST GVAGNYNGAL QVMTAEFQVP SPLVPTRENY FVRYCKQHSD GSWAVVDVSL
401: DSLRPSTPIL RTRRRPSGCL IQELPNGYSK VTWIEHMEVD DRSVHNMYKP LVQSGLAFGA KRWVATLERQ CERLASSMAS NIPGDLSVIT SPEGRKSMLK
501: LAERMVMSFC SGVGASTAHA WTTMSTTGSD DVRVMTRKSM DDPGRPPGIV LSAATSFWIP VAPKRVFDFL RDENSRKEWD ILSNGGMVQE MAHIANGHEP
601: GNCVSLLRVN SGNSSQSNML ILQESCTDAS GSYVIYAPVD IVAMNVVLSG GDPDYVALLP SGFAILPDGS VGGGDGNQHQ EMVSTTSSGS CGGSLLTVAF
701: QILVDSVPTA KLSLGSVATV NSLIKCTVER IKAAVSCDVG GGA
101: LEPLQVKFWF QNKRTQMKAQ SERHENQILK SDNDKLRAEN NRYKEALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE EIDRISAIAA KYVGKPLGSS
201: FAPLAIHAPS RSLDLEVGNF GNQTGFVGEM YGTGDILRSV SIPSETDKPI IVELAVAAME ELVRMAQTGD PLWLSTDNSV EILNEEEYFR TFPRGIGPKP
301: LGLRSEASRQ SAVVIMNHIN LVEILMDVNQ WSCVFSGIVS RALTLEVLST GVAGNYNGAL QVMTAEFQVP SPLVPTRENY FVRYCKQHSD GSWAVVDVSL
401: DSLRPSTPIL RTRRRPSGCL IQELPNGYSK VTWIEHMEVD DRSVHNMYKP LVQSGLAFGA KRWVATLERQ CERLASSMAS NIPGDLSVIT SPEGRKSMLK
501: LAERMVMSFC SGVGASTAHA WTTMSTTGSD DVRVMTRKSM DDPGRPPGIV LSAATSFWIP VAPKRVFDFL RDENSRKEWD ILSNGGMVQE MAHIANGHEP
601: GNCVSLLRVN SGNSSQSNML ILQESCTDAS GSYVIYAPVD IVAMNVVLSG GDPDYVALLP SGFAILPDGS VGGGDGNQHQ EMVSTTSSGS CGGSLLTVAF
701: QILVDSVPTA KLSLGSVATV NSLIKCTVER IKAAVSCDVG GGA
Arabidopsis Description
PDF2Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V99]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.