Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os09t0526300-00 | Rice | nucleus | 65.89 | 64.89 |
| Os01t0760800-00 | Rice | nucleus | 47.29 | 45.52 |
| Solyc07g026570.1.1 | Tomato | nucleus | 38.76 | 35.46 |
| Bra007562.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 56.59 | 25.52 |
| TraesCSU01G150000.1 | Wheat | nucleus | 40.31 | 23.85 |
| Os08t0187500-01 | Rice | nucleus | 56.59 | 22.39 |
| TraesCSU01G244000.1 | Wheat | nucleus | 33.33 | 20.87 |
| CDY42097 | Canola | nucleus | 70.54 | 17.6 |
| Zm00001d037140_P004 | Maize | nucleus | 93.02 | 17.47 |
| Zm00001d044973_P001 | Maize | nucleus | 93.02 | 17.42 |
| GSMUA_Achr6P05990_001 | Banana | nucleus | 81.4 | 17.41 |
| EER89393 | Sorghum | nucleus | 93.02 | 17.14 |
| TraesCS7A01G167900.1 | Wheat | nucleus | 89.15 | 15.86 |
| TraesCS7B01G072700.1 | Wheat | nucleus | 89.15 | 15.75 |
| TraesCS7D01G168700.1 | Wheat | nucleus | 89.15 | 15.71 |
| HORVU7Hr1G035230.2 | Barley | nucleus | 89.15 | 15.46 |
| GSMUA_Achr10P... | Banana | nucleus | 84.5 | 15.33 |
| VIT_17s0053g00780.t01 | Wine grape | nucleus | 83.72 | 15.21 |
| KRH09477 | Soybean | nucleus | 84.5 | 15.18 |
| KRH38939 | Soybean | nucleus | 84.5 | 15.1 |
| KRH60596 | Soybean | nucleus | 82.17 | 14.87 |
| KRH41898 | Soybean | nucleus | 82.95 | 14.84 |
| Solyc03g098200.2.1 | Tomato | nucleus | 81.4 | 14.56 |
| GSMUA_Achr7P11310_001 | Banana | nucleus | 82.95 | 14.54 |
| CDX96744 | Canola | nucleus | 74.42 | 14.26 |
| GSMUA_Achr2P15140_001 | Banana | nucleus | 81.4 | 14.21 |
| Bra016578.1-P | Field mustard | nucleus | 74.42 | 14.04 |
| AT1G73360.1 | Thale cress | nucleus | 78.29 | 13.99 |
| CDY26204 | Canola | nucleus | 68.99 | 13.97 |
| CDX83884 | Canola | nucleus | 73.64 | 13.87 |
| AT1G17920.1 | Thale cress | nucleus | 73.64 | 13.83 |
| CDY11109 | Canola | nucleus | 75.19 | 13.66 |
| PGSC0003DMT400069312 | Potato | nucleus | 75.19 | 13.57 |
| Bra015996.1-P | Field mustard | nucleus | 75.19 | 13.53 |
| Solyc06g072310.2.1 | Tomato | nucleus | 75.19 | 13.53 |
| CDX68229 | Canola | nucleus | 73.64 | 13.51 |
| CDX96471 | Canola | nucleus | 75.19 | 13.51 |
| Bra003846.1-P | Field mustard | nucleus | 72.87 | 13.33 |
| CDX72984 | Canola | nucleus | 73.64 | 13.29 |
| VIT_04s0079g00480.t01 | Wine grape | nucleus | 72.87 | 13.17 |
| CDY19185 | Canola | nucleus | 68.99 | 13.05 |
| GSMUA_Achr10P... | Banana | nucleus | 68.22 | 12.9 |
| CDY26205 | Canola | nucleus | 68.99 | 12.9 |
| Bra025938.1-P | Field mustard | nucleus | 68.99 | 12.82 |
| CDY16938 | Canola | nucleus | 58.91 | 11.52 |
| AT3G03260.1 | Thale cress | nucleus | 62.02 | 11.44 |
| CDY44946 | Canola | nucleus | 55.81 | 11.11 |
| CDY42301 | Canola | nucleus | 58.91 | 11.01 |
| CDY49937 | Canola | nucleus | 58.14 | 10.81 |
| Os04t0569100-01 | Rice | nucleus | 67.44 | 10.79 |
| Os08t0136100-01 | Rice | nucleus | 65.12 | 10.7 |
| CDX85461 | Canola | cytosol | 58.14 | 10.64 |
| AT5G17320.1 | Thale cress | nucleus | 58.91 | 10.59 |
| Bra020066.1-P | Field mustard | nucleus | 55.81 | 10.56 |
| CDY21211 | Canola | nucleus | 56.59 | 10.52 |
| Bra023611.1-P | Field mustard | nucleus | 57.36 | 10.5 |
| Solyc11g011940.1.1 | Tomato | nucleus | 58.14 | 10.46 |
| Bra003213.1-P | Field mustard | nucleus | 57.36 | 10.42 |
| CDY53691 | Canola | nucleus | 57.36 | 10.42 |
| Bra008562.1-P | Field mustard | cytosol, nucleus, plastid | 58.14 | 10.37 |
| Os02t0674800-01 | Rice | nucleus | 64.34 | 10.32 |
| Bra032003.1-P | Field mustard | nucleus | 55.04 | 10.3 |
| CDY43137 | Canola | nucleus | 55.04 | 10.3 |
| Bra021363.1-P | Field mustard | nucleus | 57.36 | 10.18 |
| CDY67945 | Canola | nucleus | 54.26 | 10.16 |
| CDY02713 | Canola | nucleus | 57.36 | 10.01 |
| AT1G34650.1 | Thale cress | nucleus | 53.49 | 9.75 |
| KRH36827 | Soybean | nucleus | 53.49 | 9.73 |
| KRH11810 | Soybean | nucleus | 53.49 | 9.68 |
| Solyc09g066030.1.1 | Tomato | nucleus | 53.49 | 9.54 |
| PGSC0003DMT400034503 | Potato | cytosol, nucleus | 49.61 | 9.4 |
| Os10t0575600-01 | Rice | nucleus | 59.69 | 8.73 |
| KRH36826 | Soybean | nucleus | 48.06 | 8.7 |
| Solyc05g015030.1.1 | Tomato | cytosol | 31.01 | 8.44 |
| Solyc10g018000.1.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 44.96 | 8.3 |
| KRH42428 | Soybean | nucleus | 40.31 | 6.87 |
| Os01t0788800-01 | Rice | nucleus | 28.68 | 5.88 |
| Solyc08g062510.2.1 | Tomato | nucleus | 29.46 | 5.82 |
| Os08t0292000-01 | Rice | nucleus | 34.88 | 5.69 |
| Solyc04g025480.1.1 | Tomato | cytosol | 17.83 | 3.51 |
| Os04t0627000-02 | Rice | cytosol, peroxisome | 14.73 | 3.24 |
| Solyc09g066050.2.1 | Tomato | cytosol | 13.18 | 3.07 |
| Solyc09g057540.2.1 | Tomato | cytosol | 10.85 | 2.82 |
| PGSC0003DMT400051266 | Potato | cytosol | 7.75 | 2.57 |
| KRH42429 | Soybean | cytosol | 12.4 | 2.19 |
| Solyc09g057530.1.1 | Tomato | cytosol | 0.78 | 0.73 |
| Solyc09g060140.2.1 | Tomato | mitochondrion | 0.78 | 0.27 |
| Solyc11g022420.1.1 | Tomato | cytosol | 0.78 | 0.21 |
| CDY62389 | Canola | cytosol | 0.0 | 0.0 |
| CDY69499 | Canola | cytosol | 0.0 | 0.0 |
| Os06t0207966-00 | Rice | plastid | 0.0 | 0.0 |
| PGSC0003DMT400036411 | Potato | nucleus | 0.0 | 0.0 |
| PGSC0003DMT400038820 | Potato | extracellular | 0.0 | 0.0 |
| PGSC0003DMT400051268 | Potato | cytosol | 0.0 | 0.0 |
| PGSC0003DMT400085057 | Potato | cytosol | 0.0 | 0.0 |
| Solyc04g025490.1.1 | Tomato | cytosol | 0.0 | 0.0 |
| Solyc07g026560.1.1 | Tomato | cytosol | 0.0 | 0.0 |
| Solyc07g037910.1.1 | Tomato | cytosol | 0.0 | 0.0 |
| Solyc08g062520.2.1 | Tomato | cytosol | 0.0 | 0.0 |
| Solyc09g060130.1.1 | Tomato | cytosol | 0.0 | 0.0 |
| Solyc09g060170.1.1 | Tomato | cytosol | 0.0 | 0.0 |
| Solyc09g066070.2.1 | Tomato | cytosol | 0.0 | 0.0 |
| Solyc10g018020.1.1 | Tomato | extracellular | 0.0 | 0.0 |
| Solyc10g018030.1.1 | Tomato | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | UniProt:A0A0P0WU86 | ProteinID:BAS96718.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom |
| InterPro:IPR001356 | EnsemblPlantsGene:Os06g0208100 | EnsemblPlants:Os06t0208100-00 | PFAM:PF00046 | PRINTS:PR00031 | ScanProsite:PS00027 |
| PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF236 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI00001A3760 |
Description
RICE OUTMOST CELL-SPECIFIC GENE 8Similar to Homeodomain protein HOX3. (Os06t0208100-00)
Coordinates
chr6:-:5501594..5502369
Molecular Weight (calculated)
15476.5 Da
IEP (calculated)
9.404
GRAVY (calculated)
-1.199
Length
129 amino acids
Sequence
(BLAST)
(BLAST)
001: RRKRYHRHTP RQIQQLEAMF KECPHPDENQ RAQLSRELGL EPRQIKFWFQ NRRTQMKAQH ERADNCFLRA ENDKIRCENI AIREALKNVI CPTCGGPPVG
101: EDYFDEQKLR MENARLKEEL DRVSNLTSK
101: EDYFDEQKLR MENARLKEEL DRVSNLTSK
001: MEFLGDSQNH DSSETEKKNK KKKRFHRHTP HQIQRLESTF NECQHPDEKQ RNQLSRELGL APRQIKFWFQ NRRTQKKAQH ERADNCALKE ENDKIRCENI
101: AIREAIKHAI CPSCGDSPVN EDSYFDEQKL RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS SMSVPSLPSQ
201: PNLVLSEMDK SLMTNIAVTA MEELLRLLQT NEPLWIKTDG CRDVLNLENY ENMFTRSSTS GGKKNNLGME ASRSSGVVFT NAITLVDMLM NSVKLTELFP
301: SIVASSKTLA VISSGLRGNH GDALHLMIEE LQVLSPLVTT REFCVLRYCQ QIEHGTWAIV NVSYEFPQFI SQSRSYRFPS GCLIQDMSNG YSKVTWVEHG
401: EFEEQEPIHE MFKDIVHKGL AFGAERWIAT LQRMCERFTN LLEPATSSLD LGGVIPSPEG KRSIMRLAHR MVSNFCLSVG TSNNTRSTVV SGLDEFGIRV
501: TSHKSRHEPN GMVLCAATSF WLPISPQNVF NFLKDERTRP QWDVLSNGNS VQEVAHITNG SNPGNCISVL RGFNASSSQN NMLILQESCI DSSSAALVIY
601: TPVDLPALNI AMSGQDTSYI PILPSGFAIS PDGSSKGGGS LITVGFQIMV SGLQPAKLNM ESMETVNNLI NTTVHQIKTT LNCPSTA
101: AIREAIKHAI CPSCGDSPVN EDSYFDEQKL RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS SMSVPSLPSQ
201: PNLVLSEMDK SLMTNIAVTA MEELLRLLQT NEPLWIKTDG CRDVLNLENY ENMFTRSSTS GGKKNNLGME ASRSSGVVFT NAITLVDMLM NSVKLTELFP
301: SIVASSKTLA VISSGLRGNH GDALHLMIEE LQVLSPLVTT REFCVLRYCQ QIEHGTWAIV NVSYEFPQFI SQSRSYRFPS GCLIQDMSNG YSKVTWVEHG
401: EFEEQEPIHE MFKDIVHKGL AFGAERWIAT LQRMCERFTN LLEPATSSLD LGGVIPSPEG KRSIMRLAHR MVSNFCLSVG TSNNTRSTVV SGLDEFGIRV
501: TSHKSRHEPN GMVLCAATSF WLPISPQNVF NFLKDERTRP QWDVLSNGNS VQEVAHITNG SNPGNCISVL RGFNASSSQN NMLILQESCI DSSSAALVIY
601: TPVDLPALNI AMSGQDTSYI PILPSGFAIS PDGSSKGGGS LITVGFQIMV SGLQPAKLNM ESMETVNNLI NTTVHQIKTT LNCPSTA
Arabidopsis Description
HDG12Uncharacterized protein At1g17920 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUW2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.