Factsheet for Bra021363.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21211	Canola	nucleus	95.19	99.71
Bra020066.1-P	Field mustard	nucleus	64.1	68.33
Bra032003.1-P	Field mustard	nucleus	64.24	67.78
AT3G03260.1	Thale cress	nucleus	60.11	62.52
Os06t0208100-00	Rice	nucleus	10.18	57.36
Bra023611.1-P	Field mustard	nucleus	47.18	48.65
Bra003213.1-P	Field mustard	nucleus	46.22	47.32
Bra008562.1-P	Field mustard	cytosol, nucleus, plastid	46.77	47.03
VIT_04s0079g00480.t01	Wine grape	nucleus	40.3	41.04
PGSC0003DMT400038820	Potato	extracellular	19.81	39.56
Solyc09g057530.1.1	Tomato	cytosol	7.43	39.42
TraesCS6D01G304300.1	Wheat	nucleus	36.45	38.69
TraesCS6A01G324500.1	Wheat	nucleus	36.45	38.69
Zm00001d018225_P001	Maize	nucleus	36.59	38.44
Zm00001d052133_P001	Maize	nucleus	36.86	38.4
GSMUA_Achr10P...	Banana	nucleus	37.14	37.97
Zm00001d044973_P001	Maize	nucleus	35.76	37.74
TraesCS6B01G354900.3	Wheat	nucleus	36.18	37.73
PGSC0003DMT400085057	Potato	cytosol	24.76	37.66
EES05874	Sorghum	nucleus	36.59	37.62
GSMUA_Achr6P05990_001	Banana	nucleus	30.95	37.31
Solyc09g066070.2.1	Tomato	cytosol	22.01	37.12
Zm00001d037140_P004	Maize	nucleus	35.08	37.12
Solyc10g018030.1.1	Tomato	cytosol	21.05	37.05
KRH11810	Soybean	nucleus	36.18	36.89
Bra000960.1-P	Field mustard	extracellular	5.91	36.75
Solyc11g011940.1.1	Tomato	nucleus	36.18	36.68
PGSC0003DMT400051268	Potato	cytosol	25.17	36.67
EER89393	Sorghum	nucleus	35.21	36.57
KRH36827	Soybean	nucleus	35.63	36.53
Solyc04g025490.1.1	Tomato	cytosol	12.1	36.36
GSMUA_Achr10P...	Banana	nucleus	34.11	36.36
Solyc09g057540.2.1	Tomato	cytosol	24.76	36.22
Bra016578.1-P	Field mustard	nucleus	33.98	36.11
PGSC0003DMT400034503	Potato	cytosol, nucleus	33.56	35.83
Solyc09g060130.1.1	Tomato	cytosol	21.87	35.81
Os06t0207966-00	Rice	plastid	12.93	35.74
GSMUA_Achr2P15140_001	Banana	nucleus	36.31	35.72
Bra015996.1-P	Field mustard	nucleus	35.21	35.7
Solyc09g060140.2.1	Tomato	mitochondrion	17.88	35.33
GSMUA_Achr7P11310_001	Banana	nucleus	35.63	35.19
Bra003846.1-P	Field mustard	nucleus	34.11	35.18
Bra000807.1-P	Field mustard	nucleus	28.75	35.01
KRH36826	Soybean	nucleus	33.98	34.64
Solyc09g066030.1.1	Tomato	nucleus	34.39	34.58
PGSC0003DMT400051266	Potato	cytosol	18.43	34.45
Solyc09g066050.2.1	Tomato	cytosol	26.13	34.36
TraesCS7A01G167900.1	Wheat	nucleus	33.98	34.07
TraesCS7D01G168700.1	Wheat	nucleus	34.11	33.88
TraesCS7B01G072700.1	Wheat	nucleus	33.98	33.84
Solyc11g022420.1.1	Tomato	cytosol	22.28	33.82
Solyc09g060170.1.1	Tomato	cytosol	15.96	33.72
Bra029527.1-P	Field mustard	nucleus	34.11	33.29
Bra025938.1-P	Field mustard	nucleus	31.77	33.29
Solyc10g018020.1.1	Tomato	extracellular	15.27	33.04
Bra020872.1-P	Field mustard	nucleus	33.98	33.02
Solyc07g026560.1.1	Tomato	cytosol	21.46	32.98
Solyc05g015030.1.1	Tomato	cytosol	21.46	32.91
Solyc07g037910.1.1	Tomato	cytosol	9.49	32.7
Solyc07g026570.1.1	Tomato	nucleus	6.33	32.62
PGSC0003DMT400036411	Potato	nucleus	23.52	32.57
Bra038757.1-P	Field mustard	nucleus	32.32	32.41
Solyc10g018000.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	31.09	32.33
Bra015401.1-P	Field mustard	nucleus	31.91	32.22
Solyc08g062510.2.1	Tomato	nucleus	28.89	32.16
Bra032478.1-P	Field mustard	nucleus	31.77	32.13
Bra013556.1-P	Field mustard	nucleus	30.26	31.88
KRH42428	Soybean	nucleus	32.87	31.57
Bra028295.1-P	Field mustard	nucleus	29.57	31.52
Bra005588.1-P	Field mustard	nucleus	29.71	30.68
Solyc04g025480.1.1	Tomato	cytosol	27.51	30.53
Solyc08g062520.2.1	Tomato	cytosol	21.46	30.53
Bra004934.1-P	Field mustard	nucleus	32.19	29.77
Bra037355.1-P	Field mustard	nucleus	32.19	29.62
Bra003439.1-P	Field mustard	nucleus	31.5	29.17
Bra021779.1-P	Field mustard	nucleus	28.06	28.02
KRH42429	Soybean	cytosol	27.79	27.67
Bra003535.1-P	Field mustard	nucleus	28.2	27.33
Bra021035.1-P	Field mustard	nucleus	25.86	25.61
Bra017519.1-P	Field mustard	nucleus	28.06	25.0
Bra024984.1-P	Field mustard	nucleus	26.27	24.03
Bra013898.1-P	Field mustard	nucleus	20.22	23.6
TraesCSU01G150000.1	Wheat	nucleus	7.02	23.39
TraesCSU01G244000.1	Wheat	nucleus	6.19	21.84
Bra007562.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	7.7	19.58
HORVU3Hr1G022170.1	Barley	cytosol	2.06	12.61

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	EnsemblPlantsGene:Bra021363	EnsemblPlants:Bra021363.1	EnsemblPlants:Bra021363.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913
UniProt:M4DXW7	PFAM:PF00046	PFAM:PF01852	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326
PANTHER:PTHR24326:SF504	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom
UniParc:UPI0002544E8A	:	:	:	:	:

Description

AT3G03260 (E=3e-123) HDG8 | HDG8 (HOMEODOMAIN GLABROUS 8); DNA binding / transcription factor

Coordinates

chrA01:-:25555528..25560391

Molecular Weight (calculated)

82301.8 Da

IEP (calculated)

5.645

GRAVY (calculated)

-0.286

Length

727 amino acids

Sequence
(BLAST)

001: MDHNDGGNSS SEHTSVNAKK REKRTYRRHT FQQTQRLEAY FKECPNPEES QRLSLGEELN LEPDQIKFWF QNKRTQNKTQ IERNANILLR EENKKIKCEN
101: EAMLEALRIV TCPDCGGPPL GVERGHNFQN LSLVNTFLTE QRDEMANTVS MNQHQQNMVN LFASVQGQQI FDTHTSYGTI PNSLMNDPSN SVGSSTSQDI
201: QLQLISQMDI TQLSETATRA VEELKRLFVT EDLWVMSSID GTYVIDQESY EKFSHSIKHF RKLSARVESS KDVTVVPIEA TNLIEMFLDS EKWKSLFPTI
301: VAKAMTIHKL GSELPINENC NNLQVIWEKL HILSPLVPPR EFMIVRCCQK IDEGIWIVAD VSQRIVDSDQ INSFCYKRPS GCLIRAFPGA HSEACLHCLD
401: LTCFSILKMY TLYNLKLNEI MQVTWIEHVE VDHKPDAHWL YRELLCGGSG YGAKRWTTTL ERMCERMALS SILTIPATDW SEAIATVEGR MSVMKLGERM
501: VMNFNEMLTM SGKVDFPQQS KCGVRISIRM NHDSGQPSGL VVSAASSFSV PITPLQVFDS LLNNETRHQW DVLCYRSAVS VTARILTGYN ENNYITILQP
601: TQREDDVISM SQGPTRNMMM LQECYMDALG GMIVYAPLDM ASMSLATSGE VDPLKIPILS SGFTISNDGR RSMVAEEGGT ILTVVFQILV SEDRRIRGLT
701: EQSVDTVTSL ISSTVRNIKL LLNCPLE

Best Arabidopsis Sequence Match ( AT3G03260.1 )
(BLAST)

001: MDNNGGGSSG NEQYTSGDAK QNGKRTCHRH TPQQIQRLEA YFKECPHPDE RQRNQLCREL KLEPDQIKFW FQNKRTQSKT QEDRSTNVLL RGENETLQSD
101: NEAMLDALKS VLCPACGGPP FGREERGHNL QKLRFENARL KDHRDRISNF VDQHKPNEPT VEDSLAYVPS LDRISYGING GNMYEPSSSY GPPNFQIIQP
201: RPLAETDMSL LSEIAASAVE ELKRLFLAEE QFWVKSCIDE TYVIDTESYE RFSHAVKHFS STTAHVESSK AVTVVHVEAI NLIQMFLDPE KWKELFPTIV
301: NKANTIHVLG SGLPIRGNCN VLQVMWEQLH ILSPLVPARE FMVVRCCQEI EKGIWIIADV SHRANFDFGN AACYKRPSGC LIQALPDAHS KVMWIEHVEV
401: DHKLDTHKIY RDLLSGGSGY GAKRWIVTLE RMCERMALSS IQTLPPSDRS EVITTGEARR SVMKLGERMV KNFNEMLTMS GKIDFPQQSK NGVRVSIRMN
501: IEAGQPPGIV VSASSSLAIP LTPLQVFAFL QNLDTRQQWD ILSYGTVVNE IARIVTGSSE TNCVTILRVH PTHEENNDKM VVQDSCKDDM LMLQDCYMDA
601: LGGMIVYAPM DMATMHFAVS GEVDPSHIPI LPSGFVISSD GRRSTVEDGG TLLTVAFQIL VSGKANRSRE VNEKSVDTVS ALISSTIQRI KGLLNCPEC

Arabidopsis Description

HDG8Homeobox-leucine zipper protein HDG8 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9P4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.