Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d004894_P001 | |
| Zm00001d030069_P004 | |
| Zm00001d052595_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G73360.1 | Zm00001d030069_P004 | AT4G17710.1 | 21798944 |
| AT1G73360.1 | Zm00001d004894_P001 | AT5G38420.1 | 21798944 |
| AT1G73360.1 | Zm00001d052595_P001 | AT5G38420.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES05874 | Sorghum | nucleus | 95.7 | 94.48 |
| Zm00001d018225_P001 | Maize | nucleus | 93.27 | 94.08 |
| TraesCS6A01G324500.1 | Wheat | nucleus | 84.53 | 86.13 |
| TraesCS6D01G304300.1 | Wheat | nucleus | 84.53 | 86.13 |
| TraesCS6B01G354900.3 | Wheat | nucleus | 84.53 | 84.65 |
| HORVU6Hr1G079410.6 | Barley | nucleus | 84.96 | 81.79 |
| Zm00001d037140_P004 | Maize | nucleus | 77.51 | 78.75 |
| Zm00001d044973_P001 | Maize | nucleus | 77.65 | 78.66 |
| GSMUA_Achr10P... | Banana | nucleus | 66.76 | 65.54 |
| KRH38939 | Soybean | nucleus | 66.05 | 63.85 |
| KRH09477 | Soybean | nucleus | 65.62 | 63.79 |
| VIT_17s0053g00780.t01 | Wine grape | nucleus | 63.9 | 62.82 |
| GSMUA_Achr2P15140_001 | Banana | nucleus | 65.9 | 62.25 |
| GSMUA_Achr6P05990_001 | Banana | nucleus | 53.44 | 61.86 |
| GSMUA_Achr7P11310_001 | Banana | nucleus | 65.04 | 61.68 |
| KRH60596 | Soybean | nucleus | 61.46 | 60.17 |
| KRH41898 | Soybean | nucleus | 61.6 | 59.64 |
| Solyc03g098200.2.1 | Tomato | nucleus | 60.89 | 58.95 |
| GSMUA_Achr10P... | Banana | nucleus | 57.45 | 58.8 |
| PGSC0003DMT400069312 | Potato | nucleus | 59.74 | 58.32 |
| Solyc06g072310.2.1 | Tomato | nucleus | 59.17 | 57.6 |
| CDX96744 | Canola | nucleus | 53.72 | 55.72 |
| AT1G17920.1 | Thale cress | nucleus | 53.87 | 54.73 |
| CDX83884 | Canola | nucleus | 53.44 | 54.45 |
| AT1G73360.1 | Thale cress | nucleus | 56.3 | 54.43 |
| Bra016578.1-P | Field mustard | nucleus | 53.3 | 54.39 |
| CDX68229 | Canola | nucleus | 54.44 | 54.05 |
| Bra003846.1-P | Field mustard | nucleus | 53.87 | 53.33 |
| CDY19185 | Canola | nucleus | 51.86 | 53.08 |
| CDY26204 | Canola | nucleus | 48.42 | 53.06 |
| CDX96471 | Canola | nucleus | 54.44 | 52.92 |
| CDY26205 | Canola | nucleus | 52.29 | 52.9 |
| Bra025938.1-P | Field mustard | nucleus | 52.44 | 52.74 |
| Bra015996.1-P | Field mustard | nucleus | 54.15 | 52.72 |
| CDY11109 | Canola | nucleus | 53.58 | 52.68 |
| CDY42097 | Canola | nucleus | 38.97 | 52.61 |
| CDX72984 | Canola | nucleus | 53.87 | 52.59 |
| VIT_04s0079g00480.t01 | Wine grape | nucleus | 51.72 | 50.56 |
| Solyc09g057530.1.1 | Tomato | cytosol | 8.45 | 43.07 |
| Zm00001d049443_P005 | Maize | nucleus | 48.71 | 42.71 |
| Zm00001d002234_P003 | Maize | nucleus | 48.57 | 42.7 |
| KRH11810 | Soybean | nucleus | 43.41 | 42.5 |
| KRH36827 | Soybean | nucleus | 42.84 | 42.17 |
| Zm00001d040090_P002 | Maize | nucleus | 48.28 | 41.97 |
| Zm00001d024701_P001 | Maize | nucleus | 47.56 | 41.66 |
| AT3G03260.1 | Thale cress | nucleus | 40.97 | 40.92 |
| Zm00001d026351_P003 | Maize | nucleus | 49.28 | 40.76 |
| Zm00001d000247_P001 | Maize | plasma membrane | 41.4 | 40.19 |
| CDX85461 | Canola | cytosol | 39.4 | 39.01 |
| Bra023611.1-P | Field mustard | nucleus | 39.26 | 38.87 |
| Bra032003.1-P | Field mustard | nucleus | 38.25 | 38.75 |
| Zm00001d026088_P002 | Maize | nucleus | 46.28 | 38.73 |
| CDY43137 | Canola | nucleus | 37.97 | 38.46 |
| CDY53691 | Canola | nucleus | 38.97 | 38.31 |
| AT5G17320.1 | Thale cress | nucleus | 39.4 | 38.3 |
| CDY42301 | Canola | nucleus | 37.82 | 38.26 |
| CDY62389 | Canola | cytosol | 26.79 | 38.24 |
| CDY67945 | Canola | nucleus | 37.68 | 38.17 |
| Bra003213.1-P | Field mustard | nucleus | 38.83 | 38.17 |
| Bra020066.1-P | Field mustard | nucleus | 37.25 | 38.12 |
| KRH36826 | Soybean | nucleus | 38.83 | 38.01 |
| AT1G34650.1 | Thale cress | nucleus | 38.54 | 37.99 |
| CDY49937 | Canola | nucleus | 37.39 | 37.61 |
| Solyc09g066070.2.1 | Tomato | cytosol | 23.21 | 37.59 |
| CDY21211 | Canola | nucleus | 36.82 | 37.03 |
| CDY02713 | Canola | nucleus | 39.11 | 36.94 |
| Bra008562.1-P | Field mustard | cytosol, nucleus, plastid | 38.25 | 36.93 |
| Bra021363.1-P | Field mustard | nucleus | 38.4 | 36.86 |
| Zm00001d021236_P004 | Maize | nucleus | 47.56 | 36.77 |
| CDY44946 | Canola | nucleus | 34.1 | 36.73 |
| CDY69499 | Canola | cytosol | 15.9 | 36.51 |
| Solyc07g026570.1.1 | Tomato | nucleus | 7.31 | 36.17 |
| Solyc09g060140.2.1 | Tomato | mitochondrion | 19.05 | 36.14 |
| Zm00001d040091_P001 | Maize | nucleus | 13.47 | 36.02 |
| PGSC0003DMT400034503 | Potato | cytosol, nucleus | 35.1 | 35.98 |
| Zm00001d030069_P004 | Maize | nucleus | 45.56 | 35.97 |
| Solyc11g011940.1.1 | Tomato | nucleus | 36.82 | 35.84 |
| CDY16938 | Canola | nucleus | 33.52 | 35.45 |
| PGSC0003DMT400051268 | Potato | cytosol | 25.21 | 35.27 |
| PGSC0003DMT400085057 | Potato | cytosol | 24.07 | 35.15 |
| Solyc10g018030.1.1 | Tomato | cytosol | 20.77 | 35.11 |
| Solyc09g060170.1.1 | Tomato | cytosol | 17.19 | 34.88 |
| Solyc08g062510.2.1 | Tomato | nucleus | 32.52 | 34.76 |
| Solyc10g018020.1.1 | Tomato | extracellular | 16.62 | 34.52 |
| KRH42428 | Soybean | nucleus | 37.25 | 34.35 |
| Solyc09g066030.1.1 | Tomato | nucleus | 35.53 | 34.3 |
| Solyc09g060130.1.1 | Tomato | cytosol | 21.78 | 34.23 |
| Solyc09g057540.2.1 | Tomato | cytosol | 24.36 | 34.21 |
| PGSC0003DMT400038820 | Potato | extracellular | 17.62 | 33.79 |
| Solyc09g066050.2.1 | Tomato | cytosol | 26.65 | 33.63 |
| PGSC0003DMT400051266 | Potato | cytosol | 18.62 | 33.42 |
| Solyc05g015030.1.1 | Tomato | cytosol | 22.49 | 33.12 |
| Solyc04g025490.1.1 | Tomato | cytosol | 11.46 | 33.06 |
| Solyc10g018000.1.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 32.23 | 32.19 |
| Solyc11g022420.1.1 | Tomato | cytosol | 21.92 | 31.94 |
| Zm00001d019477_P001 | Maize | nucleus | 33.67 | 31.93 |
| Solyc08g062520.2.1 | Tomato | cytosol | 23.21 | 31.7 |
| Solyc07g026560.1.1 | Tomato | cytosol | 21.2 | 31.29 |
| PGSC0003DMT400036411 | Potato | nucleus | 23.35 | 31.05 |
| Zm00001d004234_P001 | Maize | nucleus | 30.8 | 30.41 |
| Solyc04g025480.1.1 | Tomato | cytosol | 28.22 | 30.08 |
| KRH42429 | Soybean | cytosol | 31.38 | 30.0 |
| TraesCSU01G150000.1 | Wheat | nucleus | 8.74 | 27.98 |
| Solyc07g037910.1.1 | Tomato | cytosol | 8.31 | 27.49 |
| Zm00001d004230_P030 | Maize | nucleus | 30.23 | 25.92 |
| Bra007562.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 10.17 | 24.83 |
| TraesCSU01G244000.1 | Wheat | nucleus | 7.31 | 24.76 |
| Zm00001d043231_P001 | Maize | nucleus | 27.79 | 24.49 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | Gene3D:3.30.530.20 | ProteinID:AQK56288.1 | ProteinID:AQK56289.1 | ncoils:Coil |
| ProteinID:DAA34962.1 | UniProt:G2J5S7 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR002913 | InterPro:IPR023393 |
| EMBL:KJ728523 | PFAM:PF00046 | PFAM:PF01852 | ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS50848 |
| PANTHER:PTHR24326 | PANTHER:PTHR24326:SF490 | SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 | SUPFAM:SSF55961 |
| InterPro:START-like_dom_sf | InterPro:START_lipid-bd_dom | UniParc:UPI0002211BD3 | EnsemblPlantsGene:Zm00001d052133 | EnsemblPlants:Zm00001d052133_P001 | EnsemblPlants:Zm00001d052133_T001 |
| SEG:seg | : | : | : | : | : |
Description
Homeobox-transcription factor 83Homeodomain leucine zipper family IV protein%3B Putative homeobox/lipid-binding domain family protein
Coordinates
chr4:-:180558735..180563006
Molecular Weight (calculated)
76178.4 Da
IEP (calculated)
6.633
GRAVY (calculated)
-0.164
Length
698 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFGDDVMDG GSDAQRRKKR YHRHTPRQIQ QLEAMFKECP HPDENQRMQL SRELGLEPRQ IKFWFQNRRT QMKAQHERQD NCFLRAENDK IRCENIAMRE
101: ALRSVICPTC GGPPVADDYF DEQKLRMENA RLKEELDRVS SLTSKYLGRP ITQLPPAQAA LSMSSLDLSV GGLGSPSLDL DLLSGGSSGY PPFHLPMPVS
201: EMERPMMAEM ATRAMDELIR MAQAGEHLWV KAGGREVLNV DTYDSVFAKP GAASFRGPDV HVEGSRDSGL VFMSAVGLVD MFMDSSKWTE FFPAIVSKAR
301: TVDVLVNGMA GRSESLVLMY EELHVMSPVV PTREFCFLRY CRQIERGLWA IADISVDLQQ HDARFGAPPS RSCRLPSGCL IADMADGSSK VTWVEHMEIE
401: DRVPIHLLYR DLILSGAAFG AHRWLAALQR ACERCACLVP AGMPHRDIAV AGVTPEGKRS MMKLSQRMVS SFCASLSASQ LHRWTTLSGP SDVGVRVTVH
501: RSTDPGQPSG VVLSAATSIW LPVPCDRVFA FVRDEHTRSQ WDVLSHGNPV QEVSRIPNGS HPGNCISLLR GLNASQNSML ILQESCTDGT GSLVVYAPID
601: IPAANVVMSG EDPSAIPLLP SGFTILPDGR PGAPSSSSAG GPLVGSPAAA GSLVTVAFQI LVSSLPSSRL NAESVATVNS LISTTVEQIK AALNCASH
101: ALRSVICPTC GGPPVADDYF DEQKLRMENA RLKEELDRVS SLTSKYLGRP ITQLPPAQAA LSMSSLDLSV GGLGSPSLDL DLLSGGSSGY PPFHLPMPVS
201: EMERPMMAEM ATRAMDELIR MAQAGEHLWV KAGGREVLNV DTYDSVFAKP GAASFRGPDV HVEGSRDSGL VFMSAVGLVD MFMDSSKWTE FFPAIVSKAR
301: TVDVLVNGMA GRSESLVLMY EELHVMSPVV PTREFCFLRY CRQIERGLWA IADISVDLQQ HDARFGAPPS RSCRLPSGCL IADMADGSSK VTWVEHMEIE
401: DRVPIHLLYR DLILSGAAFG AHRWLAALQR ACERCACLVP AGMPHRDIAV AGVTPEGKRS MMKLSQRMVS SFCASLSASQ LHRWTTLSGP SDVGVRVTVH
501: RSTDPGQPSG VVLSAATSIW LPVPCDRVFA FVRDEHTRSQ WDVLSHGNPV QEVSRIPNGS HPGNCISLLR GLNASQNSML ILQESCTDGT GSLVVYAPID
601: IPAANVVMSG EDPSAIPLLP SGFTILPDGR PGAPSSSSAG GPLVGSPAAA GSLVTVAFQI LVSSLPSSRL NAESVATVNS LISTTVEQIK AALNCASH
001: MSFVVGVGGS GSGSGGDGGG SHHHDGSETD RKKKRYHRHT AQQIQRLESS FKECPHPDEK QRNQLSRELG LAPRQIKFWF QNRRTQLKAQ HERADNSALK
101: AENDKIRCEN IAIREALKHA ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP LDLSMTSLTG CGPFGHGPSL
201: DFDLLPGSSM AVGPNNNLQS QPNLAISDMD KPIMTGIALT AMEELLRLLQ TNEPLWTRTD GCRDILNLGS YENVFPRSSN RGKNQNFRVE ASRSSGIVFM
301: NAMALVDMFM DCVKWTELFP SIIAASKTLA VISSGMGGTH EGALHLLYEE MEVLSPLVAT REFCELRYCQ QTEQGSWIVV NVSYDLPQFV SHSQSYRFPS
401: GCLIQDMPNG YSKVTWVEHI ETEEKELVHE LYREIIHRGI AFGADRWVTT LQRMCERFAS LSVPASSSRD LGGVILSPEG KRSMMRLAQR MISNYCLSVS
501: RSNNTRSTVV SELNEVGIRV TAHKSPEPNG TVLCAATTFW LPNSPQNVFN FLKDERTRPQ WDVLSNGNAV QEVAHISNGS HPGNCISVLR GSNATHSNNM
601: LILQESSTDS SGAFVVYSPV DLAALNIAMS GEDPSYIPLL SSGFTISPDG NGSNSEQGGA STSSGRASAS GSLITVGFQI MVSNLPTAKL NMESVETVNN
701: LIGTTVHQIK TALSGPTAST TA
101: AENDKIRCEN IAIREALKHA ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP LDLSMTSLTG CGPFGHGPSL
201: DFDLLPGSSM AVGPNNNLQS QPNLAISDMD KPIMTGIALT AMEELLRLLQ TNEPLWTRTD GCRDILNLGS YENVFPRSSN RGKNQNFRVE ASRSSGIVFM
301: NAMALVDMFM DCVKWTELFP SIIAASKTLA VISSGMGGTH EGALHLLYEE MEVLSPLVAT REFCELRYCQ QTEQGSWIVV NVSYDLPQFV SHSQSYRFPS
401: GCLIQDMPNG YSKVTWVEHI ETEEKELVHE LYREIIHRGI AFGADRWVTT LQRMCERFAS LSVPASSSRD LGGVILSPEG KRSMMRLAQR MISNYCLSVS
501: RSNNTRSTVV SELNEVGIRV TAHKSPEPNG TVLCAATTFW LPNSPQNVFN FLKDERTRPQ WDVLSNGNAV QEVAHISNGS HPGNCISVLR GSNATHSNNM
601: LILQESSTDS SGAFVVYSPV DLAALNIAMS GEDPSYIPLL SSGFTISPDG NGSNSEQGGA STSSGRASAS GSLITVGFQI MVSNLPTAKL NMESVETVNN
701: LIGTTVHQIK TALSGPTAST TA
Arabidopsis Description
HDG11Homeobox-leucine zipper protein HDG11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX31]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.