Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016578.1-P | Field mustard | nucleus | 98.66 | 97.08 |
| CDY42097 | Canola | nucleus | 73.11 | 95.16 |
| CDX83884 | Canola | nucleus | 96.43 | 94.74 |
| CDY26204 | Canola | nucleus | 81.87 | 86.5 |
| CDY19185 | Canola | nucleus | 86.92 | 85.78 |
| CDY26205 | Canola | nucleus | 86.78 | 84.64 |
| AT1G17920.1 | Thale cress | nucleus | 85.74 | 83.99 |
| Os06t0208100-00 | Rice | nucleus | 14.26 | 74.42 |
| CDX68229 | Canola | nucleus | 70.58 | 67.57 |
| CDY11109 | Canola | nucleus | 71.03 | 67.32 |
| CDX72984 | Canola | nucleus | 71.17 | 66.99 |
| CDX96471 | Canola | nucleus | 71.17 | 66.71 |
| KRH09477 | Soybean | nucleus | 66.86 | 62.67 |
| VIT_17s0053g00780.t01 | Wine grape | nucleus | 65.97 | 62.54 |
| KRH38939 | Soybean | nucleus | 66.86 | 62.33 |
| Solyc03g098200.2.1 | Tomato | nucleus | 62.7 | 58.53 |
| PGSC0003DMT400069312 | Potato | nucleus | 61.81 | 58.18 |
| KRH60596 | Soybean | nucleus | 61.22 | 57.78 |
| Solyc06g072310.2.1 | Tomato | nucleus | 61.37 | 57.6 |
| KRH41898 | Soybean | nucleus | 60.77 | 56.73 |
| GSMUA_Achr10P... | Banana | nucleus | 58.1 | 54.99 |
| TraesCS6D01G304300.1 | Wheat | nucleus | 55.13 | 54.16 |
| Zm00001d018225_P001 | Maize | nucleus | 55.57 | 54.05 |
| Os06t0207966-00 | Rice | plastid | 21.1 | 53.99 |
| GSMUA_Achr6P05990_001 | Banana | nucleus | 48.29 | 53.9 |
| TraesCS6A01G324500.1 | Wheat | nucleus | 54.83 | 53.87 |
| Zm00001d052133_P001 | Maize | nucleus | 55.72 | 53.72 |
| EES05874 | Sorghum | nucleus | 56.31 | 53.61 |
| TraesCS6B01G354900.3 | Wheat | nucleus | 55.13 | 53.23 |
| GSMUA_Achr2P15140_001 | Banana | nucleus | 57.21 | 52.1 |
| Zm00001d037140_P004 | Maize | nucleus | 52.75 | 51.67 |
| Zm00001d044973_P001 | Maize | nucleus | 52.6 | 51.38 |
| GSMUA_Achr7P11310_001 | Banana | nucleus | 56.17 | 51.36 |
| EER89393 | Sorghum | nucleus | 52.9 | 50.86 |
| GSMUA_Achr10P... | Banana | nucleus | 50.97 | 50.29 |
| TraesCS7A01G167900.1 | Wheat | nucleus | 50.07 | 46.48 |
| TraesCS7B01G072700.1 | Wheat | nucleus | 49.93 | 46.03 |
| TraesCS7D01G168700.1 | Wheat | nucleus | 49.93 | 45.9 |
| CDX98703 | Canola | nucleus | 46.95 | 45.47 |
| CDY21319 | Canola | nucleus | 48.29 | 45.39 |
| CDX94054 | Canola | nucleus | 46.81 | 45.32 |
| CDX90879 | Canola | nucleus | 48.14 | 45.25 |
| CDY27417 | Canola | nucleus | 47.99 | 45.24 |
| CDY16639 | Canola | nucleus | 48.59 | 44.61 |
| CDX94586 | Canola | nucleus | 48.44 | 44.54 |
| CDX76399 | Canola | nucleus | 47.25 | 44.48 |
| CDY66622 | Canola | nucleus | 48.29 | 44.46 |
| CDY06167 | Canola | nucleus | 47.1 | 44.03 |
| CDX79091 | Canola | nucleus | 47.99 | 43.3 |
| CDY10041 | Canola | nucleus | 46.81 | 42.17 |
| CDY18903 | Canola | nucleus | 43.24 | 41.28 |
| CDX74762 | Canola | nucleus | 43.39 | 41.24 |
| CDY31916 | Canola | nucleus | 39.67 | 39.67 |
| CDY51143 | Canola | nucleus | 46.51 | 39.62 |
| CDY71572 | Canola | nucleus | 23.03 | 39.44 |
| CDY07201 | Canola | nucleus | 46.06 | 39.34 |
| CDY00515 | Canola | nucleus | 39.23 | 39.23 |
| CDX91894 | Canola | nucleus | 46.06 | 39.04 |
| CDY49515 | Canola | plasma membrane | 46.81 | 38.84 |
| CDX74347 | Canola | nucleus | 45.77 | 38.84 |
| CDX67855 | Canola | nucleus | 44.87 | 38.72 |
| CDY45684 | Canola | nucleus | 44.73 | 38.39 |
| CDY46842 | Canola | nucleus | 46.95 | 38.07 |
| CDY23096 | Canola | nucleus | 7.43 | 37.88 |
| CDX85461 | Canola | cytosol | 39.52 | 37.73 |
| CDY62389 | Canola | cytosol | 27.34 | 37.63 |
| CDY48272 | Canola | nucleus | 38.78 | 37.07 |
| CDX76559 | Canola | nucleus | 40.42 | 37.06 |
| CDY12213 | Canola | nucleus | 38.78 | 36.66 |
| CDY08866 | Canola | nucleus | 39.67 | 36.28 |
| CDY53691 | Canola | nucleus | 37.89 | 35.92 |
| CDY02713 | Canola | nucleus | 39.38 | 35.86 |
| CDY67945 | Canola | nucleus | 36.7 | 35.85 |
| CDY43137 | Canola | nucleus | 36.55 | 35.7 |
| CDY42301 | Canola | nucleus | 36.4 | 35.51 |
| CDY19129 | Canola | nucleus | 38.34 | 35.49 |
| CDY33492 | Canola | nucleus | 41.75 | 35.3 |
| CDY30748 | Canola | endoplasmic reticulum | 30.76 | 35.26 |
| CDY15339 | Canola | nucleus | 38.19 | 35.16 |
| CDX77711 | Canola | nucleus | 42.94 | 35.12 |
| CDY49937 | Canola | nucleus | 35.66 | 34.58 |
| CDY16938 | Canola | nucleus | 33.88 | 34.55 |
| CDY44946 | Canola | nucleus | 33.14 | 34.41 |
| CDY43458 | Canola | nucleus | 41.46 | 34.36 |
| CDY21211 | Canola | nucleus | 35.36 | 34.29 |
| CDY69499 | Canola | cytosol | 15.45 | 34.21 |
| CDY03177 | Canola | nucleus | 41.75 | 34.02 |
| CDX89415 | Canola | cytosol, mitochondrion | 8.92 | 33.71 |
| CDX67929 | Canola | nucleus | 37.3 | 32.06 |
| CDX79408 | Canola | nucleus | 37.15 | 32.05 |
| CDY39874 | Canola | plasma membrane | 8.02 | 28.12 |
| CDX89416 | Canola | nucleus | 26.75 | 27.73 |
| CDX94443 | Canola | cytosol | 24.96 | 26.75 |
| TraesCSU01G150000.1 | Wheat | nucleus | 8.32 | 25.69 |
| TraesCSU01G244000.1 | Wheat | nucleus | 6.84 | 22.33 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | Gene3D:3.30.530.20 | GO:A0A078E7Q6 | EnsemblPlants:CDX96744 | ProteinID:CDX96744 |
| ProteinID:CDX96744.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00102965001 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 |
| InterPro:IPR002913 | InterPro:IPR023393 | PFAM:PF00046 | PFAM:PF01852 | ScanProsite:PS00027 | PFscan:PS50071 |
| PFscan:PS50848 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF490 | SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 |
| SUPFAM:SSF55961 | InterPro:START-like_dom_sf | InterPro:START_lipid-bd_dom | UniParc:UPI0004EE6F83 | SEG:seg | : |
Description
BnaA08g22870D
Coordinates
chrLK031895:+:810887..813527
Molecular Weight (calculated)
74782.4 Da
IEP (calculated)
6.840
GRAVY (calculated)
-0.292
Length
673 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFLGDSSET DKKTMKKKRF HRHTPHQIQR LESAFNECQH PDEKQRMQLS RELGLAPRQI KFWFQNRRTQ KKAQHERADN CALKEENDRI RCENIAIREA
101: LKHTICPTCG DAPSHEDSYF DEQKLRIENA HLREELERVS SIAAKFMGRP LSHLPPLLNQ MPFHSGGPSL DFDLIPGSGS SMAVPTLPSQ PNLVLSDIDK
201: SVMTNVAVTA MEELIRLTQT NEPLWIKNDG ARDVLNLESY ENMFPRASSR GGKNHNVRVE ASRSSGIVFI NAITLVDMLM DSDKSAELFP SVVASSKTLA
301: VVSSGLRGNH GDALHLMLEE LQVLSPLVPT REFSVLRYCQ QIEHGTWAIV NVSYELPQFI SHSRPYRFPS GCLIQDMSNG YCKVTWVEHV EISEQEPIHE
401: MFKDSVREGL AFGAERWIAT LQRMCERFAA LMEPATSSMI PSPEGKRSIM KLAQRMVSNF CLSVGTSNNT RSTVVSGMNE FGIRVTSYKS HHEPNGMVLC
501: AATSFWLPVS PLIVFNFLKD ERTRPQWDVL LNGSSVQEVA HIANGSHPGN CISVLRGFNA SSSQNNMLIL QESCVDSSGS LVVYTPLDLP ALNMAMSGQD
601: TSYIPILPSG FAISPDGSRS SGGGGSLITV GFQIMVSSLQ SGKLNMESME TVNNLISSTV HHIKTTLNCP STA
101: LKHTICPTCG DAPSHEDSYF DEQKLRIENA HLREELERVS SIAAKFMGRP LSHLPPLLNQ MPFHSGGPSL DFDLIPGSGS SMAVPTLPSQ PNLVLSDIDK
201: SVMTNVAVTA MEELIRLTQT NEPLWIKNDG ARDVLNLESY ENMFPRASSR GGKNHNVRVE ASRSSGIVFI NAITLVDMLM DSDKSAELFP SVVASSKTLA
301: VVSSGLRGNH GDALHLMLEE LQVLSPLVPT REFSVLRYCQ QIEHGTWAIV NVSYELPQFI SHSRPYRFPS GCLIQDMSNG YCKVTWVEHV EISEQEPIHE
401: MFKDSVREGL AFGAERWIAT LQRMCERFAA LMEPATSSMI PSPEGKRSIM KLAQRMVSNF CLSVGTSNNT RSTVVSGMNE FGIRVTSYKS HHEPNGMVLC
501: AATSFWLPVS PLIVFNFLKD ERTRPQWDVL LNGSSVQEVA HIANGSHPGN CISVLRGFNA SSSQNNMLIL QESCVDSSGS LVVYTPLDLP ALNMAMSGQD
601: TSYIPILPSG FAISPDGSRS SGGGGSLITV GFQIMVSSLQ SGKLNMESME TVNNLISSTV HHIKTTLNCP STA
001: MEFLGDSQNH DSSETEKKNK KKKRFHRHTP HQIQRLESTF NECQHPDEKQ RNQLSRELGL APRQIKFWFQ NRRTQKKAQH ERADNCALKE ENDKIRCENI
101: AIREAIKHAI CPSCGDSPVN EDSYFDEQKL RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS SMSVPSLPSQ
201: PNLVLSEMDK SLMTNIAVTA MEELLRLLQT NEPLWIKTDG CRDVLNLENY ENMFTRSSTS GGKKNNLGME ASRSSGVVFT NAITLVDMLM NSVKLTELFP
301: SIVASSKTLA VISSGLRGNH GDALHLMIEE LQVLSPLVTT REFCVLRYCQ QIEHGTWAIV NVSYEFPQFI SQSRSYRFPS GCLIQDMSNG YSKVTWVEHG
401: EFEEQEPIHE MFKDIVHKGL AFGAERWIAT LQRMCERFTN LLEPATSSLD LGGVIPSPEG KRSIMRLAHR MVSNFCLSVG TSNNTRSTVV SGLDEFGIRV
501: TSHKSRHEPN GMVLCAATSF WLPISPQNVF NFLKDERTRP QWDVLSNGNS VQEVAHITNG SNPGNCISVL RGFNASSSQN NMLILQESCI DSSSAALVIY
601: TPVDLPALNI AMSGQDTSYI PILPSGFAIS PDGSSKGGGS LITVGFQIMV SGLQPAKLNM ESMETVNNLI NTTVHQIKTT LNCPSTA
101: AIREAIKHAI CPSCGDSPVN EDSYFDEQKL RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS SMSVPSLPSQ
201: PNLVLSEMDK SLMTNIAVTA MEELLRLLQT NEPLWIKTDG CRDVLNLENY ENMFTRSSTS GGKKNNLGME ASRSSGVVFT NAITLVDMLM NSVKLTELFP
301: SIVASSKTLA VISSGLRGNH GDALHLMIEE LQVLSPLVTT REFCVLRYCQ QIEHGTWAIV NVSYEFPQFI SQSRSYRFPS GCLIQDMSNG YSKVTWVEHG
401: EFEEQEPIHE MFKDIVHKGL AFGAERWIAT LQRMCERFTN LLEPATSSLD LGGVIPSPEG KRSIMRLAHR MVSNFCLSVG TSNNTRSTVV SGLDEFGIRV
501: TSHKSRHEPN GMVLCAATSF WLPISPQNVF NFLKDERTRP QWDVLSNGNS VQEVAHITNG SNPGNCISVL RGFNASSSQN NMLILQESCI DSSSAALVIY
601: TPVDLPALNI AMSGQDTSYI PILPSGFAIS PDGSSKGGGS LITVGFQIMV SGLQPAKLNM ESMETVNNLI NTTVHQIKTT LNCPSTA
Arabidopsis Description
HDG12Uncharacterized protein At1g17920 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUW2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.