CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99964
KRG99965
KRH01757
KRH15458
KRH39579
KRH46925
KRH74360

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73360.1	KRH39579	AT4G17710.1	21798944
AT1G73360.1	KRH74360	AT4G17710.1	21798944
AT1G73360.1	KRG99964	AT5G38420.1	21798944
AT1G73360.1	KRG99965	AT5G38420.1	21798944
AT1G73360.1	KRH01757	AT5G38420.1	21798944
AT1G73360.1	KRH15458	AT5G38420.1	21798944
AT1G73360.1	KRH46925	AT5G38420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38939	Soybean	nucleus	98.05	97.51
Os06t0208100-00	Rice	nucleus	15.18	84.5
VIT_17s0053g00780.t01	Wine grape	nucleus	80.78	81.69
KRH60596	Soybean	nucleus	80.78	81.35
KRH41898	Soybean	nucleus	80.36	80.03
Solyc03g098200.2.1	Tomato	nucleus	74.37	74.06
PGSC0003DMT400069312	Potato	nucleus	72.14	72.45
Solyc06g072310.2.1	Tomato	nucleus	71.87	71.97
AT1G17920.1	Thale cress	nucleus	64.35	67.25
CDX96744	Canola	nucleus	62.67	66.86
AT1G73360.1	Thale cress	nucleus	67.13	66.76
GSMUA_Achr10P...	Banana	nucleus	65.88	66.53
CDX96471	Canola	nucleus	66.16	66.16
Bra015996.1-P	Field mustard	nucleus	66.02	66.11
CDX72984	Canola	nucleus	65.74	66.01
Zm00001d018225_P001	Maize	nucleus	63.51	65.9
CDX68229	Canola	nucleus	64.48	65.86
TraesCS6A01G324500.1	Wheat	nucleus	62.81	65.84
TraesCS6D01G304300.1	Wheat	nucleus	62.81	65.84
CDY26204	Canola	nucleus	58.22	65.62
Zm00001d052133_P001	Maize	nucleus	63.79	65.62
CDX83884	Canola	nucleus	62.4	65.4
Bra016578.1-P	Field mustard	nucleus	62.26	65.35
EES05874	Sorghum	nucleus	64.35	65.35
Bra003846.1-P	Field mustard	nucleus	64.07	65.25
CDY19185	Canola	nucleus	61.7	64.96
CDY11109	Canola	nucleus	64.07	64.79
Os06t0207966-00	Rice	plastid	23.68	64.64
TraesCS6B01G354900.3	Wheat	nucleus	62.53	64.42
CDY26205	Canola	nucleus	61.42	63.91
Bra025938.1-P	Field mustard	nucleus	61.42	63.54
GSMUA_Achr2P15140_001	Banana	nucleus	65.18	63.33
GSMUA_Achr6P05990_001	Banana	nucleus	52.79	62.85
GSMUA_Achr7P11310_001	Banana	nucleus	64.35	62.77
Zm00001d037140_P004	Maize	nucleus	60.03	62.74
Zm00001d044973_P001	Maize	nucleus	60.17	62.7
EER89393	Sorghum	nucleus	60.45	62.0
CDY42097	Canola	nucleus	44.57	61.9
GSMUA_Achr10P...	Banana	nucleus	56.27	59.24
TraesCS7A01G167900.1	Wheat	nucleus	53.76	53.24
TraesCS7D01G168700.1	Wheat	nucleus	54.04	53.01
TraesCS7B01G072700.1	Wheat	nucleus	53.76	52.88
KRH13175	Soybean	cytosol	12.53	50.85
KRH56105	Soybean	nucleus	50.14	49.38
KRH77881	Soybean	nucleus	49.16	48.29
KRH27601	Soybean	nucleus	48.47	47.54
KRH25398	Soybean	plastid	50.28	47.44
KRH74360	Soybean	nucleus	51.95	47.27
KRH26803	Soybean	nucleus	50.42	46.35
KRH39579	Soybean	nucleus	51.53	46.25
KRH22554	Soybean	nucleus	50.28	46.22
KRH36827	Soybean	nucleus	45.4	45.98
KRH11810	Soybean	nucleus	45.54	45.86
KRH40539	Soybean	nucleus	50.97	44.63
KRH00641	Soybean	nucleus	50.28	43.92
KRH48236	Soybean	nucleus	50.7	43.91
KRG91238	Soybean	nucleus	44.29	43.5
KRH65144	Soybean	nucleus	50.56	43.42
KRH35356	Soybean	nucleus	45.68	42.88
KRG91457	Soybean	nucleus	46.1	42.6
KRH38560	Soybean	nucleus	43.45	40.21
KRH35579	Soybean	nucleus	43.45	40.1
KRH09109	Soybean	plastid	42.34	39.23
KRH36826	Soybean	nucleus	38.72	38.99
KRH47277	Soybean	nucleus	39.69	37.95
KRH09884	Soybean	plastid	39.55	37.82
KRH44348	Soybean	nucleus	39.28	37.7
KRH23432	Soybean	plastid	39.83	37.53
KRH42428	Soybean	nucleus	38.58	36.59
KRH42429	Soybean	cytosol	33.01	32.47
KRH22254	Soybean	cytosol	23.26	31.21
TraesCSU01G150000.1	Wheat	nucleus	8.64	28.44
Bra007562.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	11.14	27.97
KRH27078	Soybean	extracellular, golgi, peroxisome	12.53	27.27
TraesCSU01G244000.1	Wheat	nucleus	7.24	25.24

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100785023	MapMan:15.5.3.3	Gene3D:3.30.530.20	EMBL:ACUP02010278	ncoils:Coil
EnsemblPlantsGene:GLYMA_16G217800	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	UniProt:I1MQL8	InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393
EnsemblPlants:KRH09477	ProteinID:KRH09477	ProteinID:KRH09477.1	ProteinID:KRH09478.1	PFAM:PF00046	PFAM:PF01852
ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF236	SMART:SM00234
SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	UniParc:UPI000233F1CF
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:-:37499534..37504546

Molecular Weight (calculated)

79153.6 Da

IEP (calculated)

6.754

GRAVY (calculated)

-0.310

Length

718 amino acids

Sequence
(BLAST)

001: MEFGSGSPGD RHHHHDGSSD SQRRKKRYHR HTANQIQRLE SMFKECPHPD EKQRLQLSRE LGLAPRQIKF WFQNRRTQMK AQHERADNCA LRAENDKIRC
101: ENIAIREALK NVICPSCGGP PMNDDCYFDE QKLRLENAQL KEELDRVSSI AAKYIGRPIS QLPPVQPIHI SSLDLSMGTF ASQGLGGPSL DLDLLPGSSS
201: SSMPNVPPFQ PPCLSDMDKS LMSDIASNAM EEMIRLLQTN EPLWMKGADG RDVLDLDSYE RMFPKANSHL KNPNVHVEAS RDSGVVIMNG LTLVDMFMDP
301: NKWMELFSTI VTMARTIEVI SSGMMGGHGG SLQLMYEELQ VLSPLVSTRE FYFLRYCQQI EQGLWAIVDV SYDFTQDNQF APQFRSHRLP SGVFIQDMPN
401: GYSKVTWIEH VEIEDKTPVH RLYRNIIYSG IAFGAQRWLT TLQRMCERIA CLLVTGNSTR DLGGVIPSPE GKRSMMKLAQ RMVTNFCASI SSSAGHRWTT
501: LSGSGMNEVG VRVTVHKSSD PGQPNGVVLS AATTIWLPIP PQTVFNFFKD EKKRPQWDVL SNGNAVQEVA HIANGSHPGN CISVLRAFNS SQNNMLILQE
601: SCVDSSGSLV VYCPVDLPAI NIAMSGEDPS YIPLLPSGFT ISPDGQADQD GGGASTSTSS RVMGGGSGSG GSLITVAFQI LVSSLPSAKL NMESVTTVNS
701: LIGNTVQHIK AALNCPSS

Best Arabidopsis Sequence Match ( AT1G73360.1 )
(BLAST)

001: MSFVVGVGGS GSGSGGDGGG SHHHDGSETD RKKKRYHRHT AQQIQRLESS FKECPHPDEK QRNQLSRELG LAPRQIKFWF QNRRTQLKAQ HERADNSALK
101: AENDKIRCEN IAIREALKHA ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP LDLSMTSLTG CGPFGHGPSL
201: DFDLLPGSSM AVGPNNNLQS QPNLAISDMD KPIMTGIALT AMEELLRLLQ TNEPLWTRTD GCRDILNLGS YENVFPRSSN RGKNQNFRVE ASRSSGIVFM
301: NAMALVDMFM DCVKWTELFP SIIAASKTLA VISSGMGGTH EGALHLLYEE MEVLSPLVAT REFCELRYCQ QTEQGSWIVV NVSYDLPQFV SHSQSYRFPS
401: GCLIQDMPNG YSKVTWVEHI ETEEKELVHE LYREIIHRGI AFGADRWVTT LQRMCERFAS LSVPASSSRD LGGVILSPEG KRSMMRLAQR MISNYCLSVS
501: RSNNTRSTVV SELNEVGIRV TAHKSPEPNG TVLCAATTFW LPNSPQNVFN FLKDERTRPQ WDVLSNGNAV QEVAHISNGS HPGNCISVLR GSNATHSNNM
601: LILQESSTDS SGAFVVYSPV DLAALNIAMS GEDPSYIPLL SSGFTISPDG NGSNSEQGGA STSSGRASAS GSLITVGFQI MVSNLPTAKL NMESVETVNN
701: LIGTTVHQIK TALSGPTAST TA

Arabidopsis Description

HDG11Homeobox-leucine zipper protein HDG11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX31]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.