CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91238	Soybean	nucleus	80.85	86.05
KRH13175	Soybean	cytosol	14.52	63.84
KRH77881	Soybean	nucleus	59.64	63.47
KRH27601	Soybean	nucleus	59.51	63.25
GSMUA_Achr3P23090_001	Banana	endoplasmic reticulum, plasma membrane	52.83	62.27
KRH56105	Soybean	nucleus	57.71	61.59
Os04t0627000-02	Rice	cytosol, peroxisome	44.6	59.22
KRH25398	Soybean	plastid	57.84	59.13
GSMUA_Achr8P07310_001	Banana	mitochondrion, nucleus	53.98	57.85
KRH26803	Soybean	nucleus	57.97	57.75
KRH22554	Soybean	nucleus	57.71	57.49
EES11464	Sorghum	nucleus	57.33	56.53
GSMUA_Achr10P...	Banana	nucleus	51.29	55.8
EES13460	Sorghum	mitochondrion, nucleus	54.76	54.55
Os08t0136100-01	Rice	nucleus	54.76	54.27
TraesCS2B01G497500.1	Wheat	nucleus	53.98	54.19
TraesCS2D01G473700.1	Wheat	nucleus	53.98	54.12
TraesCS2A01G474000.1	Wheat	nucleus	53.98	54.05
GSMUA_Achr11P...	Banana	plastid	54.63	53.87
Zm00001d002234_P003	Maize	nucleus	54.88	53.78
Zm00001d049443_P005	Maize	nucleus	54.88	53.64
TraesCS7A01G308400.1	Wheat	nucleus	53.86	52.64
TraesCS7B01G208600.1	Wheat	nucleus	53.86	52.51
TraesCS7D01G305200.1	Wheat	nucleus	53.6	52.39
Zm00001d024701_P001	Maize	nucleus	53.08	51.82
EES14500	Sorghum	nucleus	54.11	51.72
Zm00001d000247_P001	Maize	plasma membrane	47.43	51.32
Zm00001d026351_P003	Maize	nucleus	55.14	50.83
KRH35356	Soybean	nucleus	44.6	45.36
KRH41898	Soybean	nucleus	41.77	45.08
KRG91457	Soybean	nucleus	44.6	44.66
KRH60596	Soybean	nucleus	40.62	44.32
KRH38939	Soybean	nucleus	40.49	43.63
KRH09477	Soybean	nucleus	40.1	43.45
KRH40539	Soybean	nucleus	44.86	42.56
KRH48236	Soybean	nucleus	44.99	42.22
KRH00641	Soybean	nucleus	44.6	42.21
KRH65144	Soybean	nucleus	44.73	41.63
KRH09109	Soybean	plastid	39.97	40.13
KRH38560	Soybean	nucleus	39.97	40.08
KRH44348	Soybean	nucleus	37.15	38.64
KRH47277	Soybean	nucleus	36.89	38.22
KRH23432	Soybean	plastid	37.15	37.93
KRH09884	Soybean	plastid	36.38	37.68
KRH74360	Soybean	nucleus	37.66	37.14
Os08t0187500-01	Rice	nucleus	15.55	37.12
KRH39579	Soybean	nucleus	37.92	36.88
KRH22254	Soybean	cytosol	24.16	35.14
KRH11810	Soybean	nucleus	32.13	35.06
KRH36827	Soybean	nucleus	31.36	34.41
KRH27078	Soybean	extracellular, golgi, peroxisome	14.4	33.94
KRH36826	Soybean	nucleus	29.56	32.26
KRH42428	Soybean	nucleus	28.53	29.33
KRH42429	Soybean	cytosol	23.26	24.79

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100787891	MapMan:15.5.3.3	UniProt:A0A0R0HYQ3	EMBL:ACUP02006692	ncoils:Coil
EnsemblPlantsGene:GLYMA_10G251300	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:IPR002913	EnsemblPlants:KRH35579	ProteinID:KRH35579	ProteinID:KRH35579.1	ProteinID:KRH35580.1
ProteinID:KRH35581.1	ProteinID:KRH35582.1	PFAM:PF00046	PFAM:PF01852	PFscan:PS50071	PFscan:PS50848
PANTHER:PTHR24326	PANTHER:PTHR24326:SF320	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961
InterPro:START_lipid-bd_dom	UniParc:UPI0003DE7C49	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:47941774..47946461

Molecular Weight (calculated)

86369.3 Da

IEP (calculated)

6.563

GRAVY (calculated)

-0.462

Length

778 amino acids

Sequence
(BLAST)

001: MYNKSQNTKF DSQQQQQQQQ PQQQQPQNLM EMSTQRTSSE GRNRDDQEPA AGNEVTMEAP PSGDEDQDPD EGFKRRRHTR HTLHQISEME AFFKECPHPD
101: EKQRKALGRE LGLVPLQIKF WFQNKRTQVK SQQERYENNL LRVENDKLRA ENSRYRNALS NTSCPNCGAP TTLGEMSFDE QQLRMENARQ KEEIDSMSGL
201: AAKYAAGKSA SNSYYNMPSN QNQMPSRSLD LGVVNNNSSI NNNNSSINNS NNKNNNNNNY IVQAQPVAMV GEMYGGNDPL RELPLLSSFD KDLISEIGLV
301: AVEEINQLTL SADPLWVPGN YGSEVINEDE YLRHFPRGIG PTLLGARTES SRQTAIVMMH HMKLVEMLMD VNQWSNMFCG IVSRAVTHEV LSIGDHARYD
401: GAYQVMSAEF QVPSPLVPTR DNYFIRFSKK HAGQSWAVVD ISMDHLRPGA VTRTRRRPSG CIIQELPNGY SKVIWVEHVE VDDIEVHNLY KNLVNSTLAF
501: GAKRWIAAIE RTCEHLARAM ATNIPQGALC VITSHEGRKS MMKLAERMVL SFSTGVGAST ANAWTPLPLD LENVRVMTRK SVDDPGRPSG IVLSAATSLW
601: LPVPARRVFD FLRSENTRNQ VWDILSSGAQ VNELAHIAKG RDHGNSVSLL RVNTQNVAQN NMLILQESCI DATGSFVVYA PIDLASMNLV LGGGNPDYVA
701: LLPSGFAVLP DGPALNVVPG PVCEVVGSGR GCLLTVAFQI LVDSTPTAKL SVGSVTTVNN LIKRTVERIK DSVTLDGA

Best Arabidopsis Sequence Match ( AT4G04890.1 )
(BLAST)

001: MYHPNMFESH HMFDMTPKST SDNDLGITGS REDDFETKSG TEVTTENPSG EELQDPSQRP NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRDLN
101: LEPLQVKFWF QNKRTQMKAQ SERHENQILK SDNDKLRAEN NRYKEALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE EIDRISAIAA KYVGKPLGSS
201: FAPLAIHAPS RSLDLEVGNF GNQTGFVGEM YGTGDILRSV SIPSETDKPI IVELAVAAME ELVRMAQTGD PLWLSTDNSV EILNEEEYFR TFPRGIGPKP
301: LGLRSEASRQ SAVVIMNHIN LVEILMDVNQ WSCVFSGIVS RALTLEVLST GVAGNYNGAL QVMTAEFQVP SPLVPTRENY FVRYCKQHSD GSWAVVDVSL
401: DSLRPSTPIL RTRRRPSGCL IQELPNGYSK VTWIEHMEVD DRSVHNMYKP LVQSGLAFGA KRWVATLERQ CERLASSMAS NIPGDLSVIT SPEGRKSMLK
501: LAERMVMSFC SGVGASTAHA WTTMSTTGSD DVRVMTRKSM DDPGRPPGIV LSAATSFWIP VAPKRVFDFL RDENSRKEWD ILSNGGMVQE MAHIANGHEP
601: GNCVSLLRVN SGNSSQSNML ILQESCTDAS GSYVIYAPVD IVAMNVVLSG GDPDYVALLP SGFAILPDGS VGGGDGNQHQ EMVSTTSSGS CGGSLLTVAF
701: QILVDSVPTA KLSLGSVATV NSLIKCTVER IKAAVSCDVG GGA

Arabidopsis Description

PDF2Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V99]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.