Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH48236 | Soybean | nucleus | 95.69 | 96.5 |
| Os09t0526300-00 | Rice | nucleus | 13.76 | 87.79 |
| VIT_15s0048g02000.t01 | Wine grape | nucleus | 81.82 | 84.34 |
| KRH00641 | Soybean | nucleus | 82.3 | 83.7 |
| KRH40539 | Soybean | nucleus | 81.34 | 82.93 |
| Solyc01g091630.2.1 | Tomato | nucleus | 79.55 | 81.0 |
| PGSC0003DMT400071377 | Potato | nucleus | 79.31 | 80.76 |
| PGSC0003DMT400019986 | Potato | nucleus | 70.57 | 72.93 |
| CDY18903 | Canola | nucleus | 59.33 | 70.35 |
| GSMUA_Achr1P18760_001 | Banana | nucleus | 63.52 | 70.24 |
| CDX74762 | Canola | nucleus | 59.45 | 70.2 |
| CDX74347 | Canola | nucleus | 65.79 | 69.36 |
| Bra037355.1-P | Field mustard | nucleus | 65.43 | 69.24 |
| CDY51143 | Canola | nucleus | 65.43 | 69.24 |
| CDX91894 | Canola | nucleus | 65.67 | 69.14 |
| CDX67855 | Canola | nucleus | 64.35 | 68.97 |
| Bra003439.1-P | Field mustard | nucleus | 64.59 | 68.79 |
| CDY45684 | Canola | nucleus | 64.47 | 68.75 |
| AT4G00730.1 | Thale cress | nucleus | 65.91 | 68.7 |
| CDY07201 | Canola | nucleus | 64.71 | 68.65 |
| AT3G61150.1 | Thale cress | nucleus | 64.47 | 66.71 |
| Bra004934.1-P | Field mustard | nucleus | 62.44 | 66.41 |
| KRH35356 | Soybean | nucleus | 59.81 | 65.36 |
| HORVU0Hr1G013510.1 | Barley | cytosol | 10.77 | 64.75 |
| KRG91457 | Soybean | nucleus | 60.05 | 64.61 |
| Os02t0674800-01 | Rice | nucleus | 61.48 | 63.93 |
| GSMUA_Achr3P12410_001 | Banana | nucleus | 56.34 | 63.48 |
| Zm00001d040090_P002 | Maize | nucleus | 60.89 | 63.39 |
| HORVU6Hr1G065300.3 | Barley | nucleus | 60.41 | 63.12 |
| TraesCS6A01G255800.1 | Wheat | nucleus | 60.17 | 62.56 |
| EES02604 | Sorghum | nucleus | 60.89 | 62.45 |
| TraesCS6D01G237000.1 | Wheat | nucleus | 60.05 | 62.44 |
| TraesCS6B01G269700.1 | Wheat | nucleus | 60.05 | 62.44 |
| Os04t0569100-01 | Rice | nucleus | 57.54 | 59.68 |
| EER99222 | Sorghum | nucleus | 61.84 | 59.29 |
| KRH13175 | Soybean | cytosol | 12.44 | 58.76 |
| KRH56105 | Soybean | nucleus | 50.48 | 57.89 |
| HORVU5Hr1G080700.2 | Barley | nucleus | 58.97 | 57.8 |
| TraesCS5D01G320600.1 | Wheat | nucleus | 58.49 | 57.6 |
| TraesCS5B01G315100.2 | Wheat | nucleus | 58.49 | 57.53 |
| TraesCS5A01G314400.2 | Wheat | nucleus | 58.37 | 57.48 |
| Zm00001d040091_P001 | Maize | nucleus | 17.82 | 57.09 |
| KRH38560 | Soybean | nucleus | 52.51 | 56.57 |
| KXG26935 | Sorghum | nucleus | 54.19 | 56.48 |
| KRH09109 | Soybean | plastid | 52.27 | 56.39 |
| Zm00001d021236_P004 | Maize | nucleus | 60.77 | 56.26 |
| KRH25398 | Soybean | plastid | 50.96 | 55.98 |
| KRH22554 | Soybean | nucleus | 51.44 | 55.06 |
| KRH26803 | Soybean | nucleus | 51.2 | 54.8 |
| KRH77881 | Soybean | nucleus | 47.37 | 54.17 |
| KRH27601 | Soybean | nucleus | 47.37 | 54.1 |
| TraesCS2D01G398600.1 | Wheat | nucleus | 49.52 | 52.81 |
| TraesCS2B01G419200.1 | Wheat | nucleus | 49.28 | 52.48 |
| HORVU2Hr1G095210.1 | Barley | nucleus | 48.33 | 51.79 |
| TraesCS2A01G401200.3 | Wheat | nucleus | 49.16 | 51.38 |
| Zm00001d026088_P002 | Maize | nucleus | 51.2 | 51.32 |
| KRH38939 | Soybean | nucleus | 43.9 | 50.83 |
| KRH09477 | Soybean | nucleus | 43.42 | 50.56 |
| KRG91238 | Soybean | nucleus | 41.99 | 48.02 |
| KRH41898 | Soybean | nucleus | 41.15 | 47.71 |
| KRH60596 | Soybean | nucleus | 40.67 | 47.69 |
| KRH44348 | Soybean | nucleus | 41.03 | 45.86 |
| KRH47277 | Soybean | nucleus | 40.79 | 45.41 |
| KRH09884 | Soybean | plastid | 40.67 | 45.27 |
| KRH23432 | Soybean | plastid | 41.15 | 45.14 |
| KRH35579 | Soybean | nucleus | 41.63 | 44.73 |
| KRH74360 | Soybean | nucleus | 41.39 | 43.85 |
| HORVU4Hr1G062510.2 | Barley | cytosol | 14.35 | 43.32 |
| KRH39579 | Soybean | nucleus | 41.15 | 43.0 |
| HORVU7Hr1G036950.2 | Barley | cytosol | 9.33 | 42.62 |
| KRH36827 | Soybean | nucleus | 32.06 | 37.8 |
| KRH11810 | Soybean | nucleus | 31.94 | 37.45 |
| HORVU3Hr1G108430.1 | Barley | cytosol | 14.71 | 36.94 |
| KRH22254 | Soybean | cytosol | 21.77 | 34.02 |
| KRH36826 | Soybean | nucleus | 28.59 | 33.52 |
| KRH42428 | Soybean | nucleus | 27.63 | 30.52 |
| KRH27078 | Soybean | extracellular, golgi, peroxisome | 11.6 | 29.39 |
| KRH42429 | Soybean | cytosol | 24.64 | 28.22 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100818372 | MapMan:15.5.3.3 | UniProt:A0A0R0KKG1 | EMBL:ACUP02001314 | ncoils:Coil |
| EnsemblPlantsGene:GLYMA_03G016600 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:Homeobox-like_sf |
| InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR002913 | EnsemblPlants:KRH65144 | ProteinID:KRH65144 |
| ProteinID:KRH65144.1 | PFAM:PF00046 | PFAM:PF01852 | ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS50848 |
| PANTHER:PTHR24326 | PANTHER:PTHR24326:SF487 | SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 | SUPFAM:SSF55961 |
| InterPro:START_lipid-bd_dom | UniParc:UPI0003DEACE2 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr3:-:1628562..1635871
Molecular Weight (calculated)
91377.6 Da
IEP (calculated)
6.353
GRAVY (calculated)
-0.338
Length
836 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFGGFLDDK SGSGGARINN FSDIPYNNNN VTNTTTTNNN NNDRMPFGAI SQPRLVTTTP TLAKSMFNSP GLSLALQQTS IDGQEDVNRM AENSFEPNGL
101: RRSREDEHES RSGSDNMDGG SGDEHDAADN PPRKKRYHRH TPQQIQELEA LFKECPHPDE KQRLELSRRL CLETRQVKFW FQNRRTQMKT QLERHENTLL
201: RQENDKLRAE NMSIRDAMRN PMCSNCGGLA IIGEISLEEQ HLRIENARLK DELDRVCALA GKFLGRPVSS LPSLELGMGG NGFAGMPAAT LPLAQDFAMG
301: MSVSMNNNAL AMVSPPTSTR PAAAGFDRSV ERSMFLELAL AAMDELVKMA QTGEPLWMRN VEGGREILNH EEYVRNFTPS IGLRPNGFVS EASRENGMVI
401: INSLALVETL MDSNRWAEMF PCIIARTSTT EVISSGINGT RNGALQLMHA ELQVLSPLVP VREVNFLRFC KQHAEGLWAV VDVSIDSIRE SSGAPTFVNG
501: RRLPSGCVVQ DMPNGYSKVT WVEHAEYEES QVHQLYRPLL SSGMGFGAQR WVATLQRQCE CLAILMSSAA PSRDHSAITA GGRRSMVKLA QRMTNNFCAG
601: VCASTVHKWN KLNAAANVDE DVRVMTRKSV DDPGEPPGIV LSAATSVWLP VSPHRLFDFL RDERLRSEWD ILSNGGPMQE MAHIAKGQDH GNAVSLLRAS
701: AINSNQSSML ILQETCIDAA GSLVVYAPVD IPAMHVVMNG GDSAYVALLP SGFAIVPDGP GSRGPHQNGP TSSTTTTTNG GDNGVTRVSG SLLTVAFQIL
801: VNSLPTAKLT VESVETVNNL ISCTVQKIKA ALHCES
101: RRSREDEHES RSGSDNMDGG SGDEHDAADN PPRKKRYHRH TPQQIQELEA LFKECPHPDE KQRLELSRRL CLETRQVKFW FQNRRTQMKT QLERHENTLL
201: RQENDKLRAE NMSIRDAMRN PMCSNCGGLA IIGEISLEEQ HLRIENARLK DELDRVCALA GKFLGRPVSS LPSLELGMGG NGFAGMPAAT LPLAQDFAMG
301: MSVSMNNNAL AMVSPPTSTR PAAAGFDRSV ERSMFLELAL AAMDELVKMA QTGEPLWMRN VEGGREILNH EEYVRNFTPS IGLRPNGFVS EASRENGMVI
401: INSLALVETL MDSNRWAEMF PCIIARTSTT EVISSGINGT RNGALQLMHA ELQVLSPLVP VREVNFLRFC KQHAEGLWAV VDVSIDSIRE SSGAPTFVNG
501: RRLPSGCVVQ DMPNGYSKVT WVEHAEYEES QVHQLYRPLL SSGMGFGAQR WVATLQRQCE CLAILMSSAA PSRDHSAITA GGRRSMVKLA QRMTNNFCAG
601: VCASTVHKWN KLNAAANVDE DVRVMTRKSV DDPGEPPGIV LSAATSVWLP VSPHRLFDFL RDERLRSEWD ILSNGGPMQE MAHIAKGQDH GNAVSLLRAS
701: AINSNQSSML ILQETCIDAA GSLVVYAPVD IPAMHVVMNG GDSAYVALLP SGFAIVPDGP GSRGPHQNGP TSSTTTTTNG GDNGVTRVSG SLLTVAFQIL
801: VNSLPTAKLT VESVETVNNL ISCTVQKIKA ALHCES
001: MNFNGFLDDG AGASKLLSDA PYNNHFSFSA VDTMLGSAAI APSQSLPFSS SGLSLGLQTN GEMSRNGEIM ESNVSRKSSR GEDVESRSES DNAEAVSGDD
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST
Arabidopsis Description
HDG1HDG1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5Q4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.