Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74762 | Canola | nucleus | 97.31 | 96.89 |
| Os09t0526300-00 | Rice | nucleus | 14.89 | 80.15 |
| CDX67855 | Canola | nucleus | 72.34 | 65.38 |
| CDY45684 | Canola | nucleus | 72.2 | 64.92 |
| VIT_15s0048g02000.t01 | Wine grape | nucleus | 71.49 | 62.15 |
| Solyc01g091630.2.1 | Tomato | nucleus | 71.35 | 61.27 |
| KRH40539 | Soybean | nucleus | 71.21 | 61.22 |
| PGSC0003DMT400071377 | Potato | nucleus | 71.21 | 61.14 |
| KRH00641 | Soybean | nucleus | 70.92 | 60.83 |
| CDY51143 | Canola | nucleus | 67.09 | 59.87 |
| KRH48236 | Soybean | nucleus | 70.35 | 59.83 |
| GSMUA_Achr1P18760_001 | Banana | nucleus | 63.97 | 59.66 |
| CDY07201 | Canola | nucleus | 66.52 | 59.52 |
| KRH65144 | Soybean | nucleus | 70.35 | 59.33 |
| CDX74347 | Canola | nucleus | 66.67 | 59.27 |
| CDX91894 | Canola | nucleus | 66.38 | 58.94 |
| PGSC0003DMT400019986 | Potato | nucleus | 66.95 | 58.34 |
| HORVU0Hr1G013510.1 | Barley | cytosol | 11.35 | 57.55 |
| HORVU6Hr1G065300.3 | Barley | nucleus | 64.68 | 57.0 |
| TraesCS6D01G237000.1 | Wheat | nucleus | 64.82 | 56.84 |
| TraesCS6A01G255800.1 | Wheat | nucleus | 64.82 | 56.84 |
| TraesCS6B01G269700.1 | Wheat | nucleus | 64.68 | 56.72 |
| Os02t0674800-01 | Rice | nucleus | 64.54 | 56.59 |
| Zm00001d040090_P002 | Maize | nucleus | 64.4 | 56.54 |
| EES02604 | Sorghum | nucleus | 64.54 | 55.83 |
| GSMUA_Achr3P12410_001 | Banana | nucleus | 57.45 | 54.58 |
| Zm00001d040091_P001 | Maize | nucleus | 19.86 | 53.64 |
| Os04t0569100-01 | Rice | nucleus | 60.0 | 52.48 |
| CDY31916 | Canola | nucleus | 48.37 | 50.67 |
| HORVU5Hr1G080700.2 | Barley | nucleus | 61.13 | 50.53 |
| TraesCS5B01G315100.2 | Wheat | nucleus | 60.85 | 50.47 |
| CDY00515 | Canola | nucleus | 48.09 | 50.37 |
| TraesCS5D01G320600.1 | Wheat | nucleus | 60.57 | 50.29 |
| TraesCS5A01G314400.2 | Wheat | nucleus | 60.43 | 50.18 |
| EER99222 | Sorghum | nucleus | 61.84 | 50.0 |
| KXG26935 | Sorghum | nucleus | 56.31 | 49.5 |
| CDX98703 | Canola | nucleus | 48.51 | 49.21 |
| CDX94054 | Canola | nucleus | 48.37 | 49.06 |
| CDX90879 | Canola | nucleus | 49.36 | 48.6 |
| CDY21319 | Canola | nucleus | 49.22 | 48.46 |
| CDX76399 | Canola | nucleus | 48.94 | 48.25 |
| CDX94586 | Canola | nucleus | 49.79 | 47.95 |
| CDY16639 | Canola | nucleus | 49.79 | 47.89 |
| CDY27417 | Canola | nucleus | 48.37 | 47.76 |
| Zm00001d021236_P004 | Maize | nucleus | 60.99 | 47.62 |
| TraesCS2D01G398600.1 | Wheat | nucleus | 51.77 | 46.56 |
| CDY06167 | Canola | nucleus | 47.52 | 46.53 |
| CDY66622 | Canola | nucleus | 47.94 | 46.24 |
| CDY23096 | Canola | nucleus | 8.65 | 46.21 |
| TraesCS2B01G419200.1 | Wheat | nucleus | 51.35 | 46.11 |
| HORVU2Hr1G095210.1 | Barley | nucleus | 50.92 | 46.03 |
| Zm00001d026088_P002 | Maize | nucleus | 53.76 | 45.44 |
| CDX79091 | Canola | nucleus | 47.94 | 45.31 |
| CDY10041 | Canola | nucleus | 47.94 | 45.25 |
| TraesCS2A01G401200.3 | Wheat | nucleus | 51.06 | 45.0 |
| CDX89415 | Canola | cytosol, mitochondrion | 11.21 | 44.38 |
| CDX96744 | Canola | nucleus | 41.28 | 43.24 |
| CDX68229 | Canola | nucleus | 42.41 | 42.53 |
| CDX83884 | Canola | nucleus | 40.85 | 42.04 |
| CDY11109 | Canola | nucleus | 42.27 | 41.97 |
| CDY49515 | Canola | plasma membrane | 48.09 | 41.8 |
| CDX96471 | Canola | nucleus | 42.55 | 41.78 |
| CDX72984 | Canola | nucleus | 42.27 | 41.68 |
| CDY42097 | Canola | nucleus | 30.07 | 41.01 |
| CDY46842 | Canola | nucleus | 48.09 | 40.84 |
| CDY19185 | Canola | nucleus | 39.43 | 40.76 |
| CDY26204 | Canola | nucleus | 36.74 | 40.66 |
| CDY26205 | Canola | nucleus | 39.57 | 40.43 |
| CDY48272 | Canola | nucleus | 39.72 | 39.77 |
| CDY71572 | Canola | nucleus | 21.99 | 39.44 |
| CDY12213 | Canola | nucleus | 39.72 | 39.33 |
| CDY19129 | Canola | nucleus | 39.57 | 38.38 |
| CDX67929 | Canola | nucleus | 41.99 | 37.8 |
| CDY15339 | Canola | nucleus | 39.15 | 37.76 |
| CDX79408 | Canola | nucleus | 41.7 | 37.69 |
| CDY30748 | Canola | endoplasmic reticulum | 31.06 | 37.31 |
| HORVU4Hr1G062510.2 | Barley | cytosol | 14.47 | 36.82 |
| CDY39874 | Canola | plasma membrane | 9.93 | 36.46 |
| CDY43458 | Canola | nucleus | 38.58 | 33.5 |
| HORVU7Hr1G036950.2 | Barley | cytosol | 8.65 | 33.33 |
| CDY08866 | Canola | nucleus | 34.47 | 33.02 |
| CDY03177 | Canola | nucleus | 38.44 | 32.81 |
| CDY67945 | Canola | nucleus | 32.06 | 32.8 |
| CDY42301 | Canola | nucleus | 31.91 | 32.61 |
| CDX77711 | Canola | nucleus | 38.01 | 32.56 |
| CDX76559 | Canola | nucleus | 33.9 | 32.56 |
| CDY62389 | Canola | cytosol | 22.55 | 32.52 |
| CDY43137 | Canola | nucleus | 31.77 | 32.51 |
| CDY33492 | Canola | nucleus | 36.45 | 32.29 |
| CDX89416 | Canola | nucleus | 29.65 | 32.2 |
| CDY69499 | Canola | cytosol | 13.62 | 31.58 |
| CDY53691 | Canola | nucleus | 31.63 | 31.41 |
| CDY49937 | Canola | nucleus | 30.78 | 31.27 |
| CDX94443 | Canola | cytosol | 27.8 | 31.21 |
| CDY44946 | Canola | nucleus | 28.65 | 31.17 |
| CDY21211 | Canola | nucleus | 30.5 | 30.98 |
| HORVU3Hr1G108430.1 | Barley | cytosol | 14.61 | 30.93 |
| CDX85461 | Canola | cytosol | 30.92 | 30.92 |
| CDY16938 | Canola | nucleus | 27.94 | 29.85 |
| CDY02713 | Canola | nucleus | 30.78 | 29.36 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | GO:A0A078G2K7 | UniProt:A0A078G2K7 | EnsemblPlants:CDY18903 | ProteinID:CDY18903 |
| ProteinID:CDY18903.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00006095001 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR002913 |
| PFAM:PF00046 | PFAM:PF01852 | ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS50848 | PANTHER:PTHR24326 |
| PANTHER:PTHR24326:SF487 | SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 | SUPFAM:SSF55961 | InterPro:START_lipid-bd_dom |
| UniParc:UPI0004EE6536 | SEG:seg | : | : | : | : |
Description
BnaC04g04470DBnaC04g04470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G2K7]
Coordinates
chrLK032090:-:233184..237215
Molecular Weight (calculated)
77659.7 Da
IEP (calculated)
7.123
GRAVY (calculated)
-0.354
Length
705 amino acids
Sequence
(BLAST)
(BLAST)
001: MNFSGFLHHD DGKTPGGETV GGGNHFFSPA AAMSGGPVQF SSPRLSLGLQ TNVENKGGEV GRTGESYEVS VTRRSPESRS GSDNVEALSG EDDLDASDRP
101: LKKKKRYHRH TPQQIQELES VFKECPHPDE KQRLDLSRRL NLDTRQVKFW FQNRRTQMKT QIERHENSLL RQENDKLRAE NMSVREAMRN PMCGNCGASA
201: HQLRIENSRL KDELDRLCAL AGKFINRSDD AGSHQLPNST LKLGVGVDEK SLYLELAVSA MDELVKMAQT SEPLWIQSSK GKREMLNPSK EVGMVIINSL
301: ALVETLMDSE RWAEMFPCMI AKNSTIEIIS SGMGGTRNGA IHLMQAELQL LSPLVPVRQV TFLRFCKQHA EGVWAVVDVS VDRISERGGS ASARLPSGCL
401: VHDMPNGYAK VTWIDHTEYD ETNIHHSYRP LVSSGLAFGS KRWVSALQRQ CESLAILMSS AIPNRNKPTP AISSIGKKSM LRLAQRMTEN FCRGVCASSS
501: HKWSKLDIGN IDEDVRIMTR KNVDDSGEPP GILLSAATSV WVPVTPRRLF DFLRDELLRS EWDILSNGGP MQEIANIFKG QDHSNSVSLL RSTAMNASQS
601: SMLILQETSI DASGAVVVYA PVDIPAMHAV MNGGDSAYVA LLPSGFAILP DGQGTEETGS LLTVAFQILV NSLPTAKLNV ESIETVSNLI SCTVQKIRAA
701: LRCDK
101: LKKKKRYHRH TPQQIQELES VFKECPHPDE KQRLDLSRRL NLDTRQVKFW FQNRRTQMKT QIERHENSLL RQENDKLRAE NMSVREAMRN PMCGNCGASA
201: HQLRIENSRL KDELDRLCAL AGKFINRSDD AGSHQLPNST LKLGVGVDEK SLYLELAVSA MDELVKMAQT SEPLWIQSSK GKREMLNPSK EVGMVIINSL
301: ALVETLMDSE RWAEMFPCMI AKNSTIEIIS SGMGGTRNGA IHLMQAELQL LSPLVPVRQV TFLRFCKQHA EGVWAVVDVS VDRISERGGS ASARLPSGCL
401: VHDMPNGYAK VTWIDHTEYD ETNIHHSYRP LVSSGLAFGS KRWVSALQRQ CESLAILMSS AIPNRNKPTP AISSIGKKSM LRLAQRMTEN FCRGVCASSS
501: HKWSKLDIGN IDEDVRIMTR KNVDDSGEPP GILLSAATSV WVPVTPRRLF DFLRDELLRS EWDILSNGGP MQEIANIFKG QDHSNSVSLL RSTAMNASQS
601: SMLILQETSI DASGAVVVYA PVDIPAMHAV MNGGDSAYVA LLPSGFAILP DGQGTEETGS LLTVAFQILV NSLPTAKLNV ESIETVSNLI SCTVQKIRAA
701: LRCDK
001: MNFNGFLDDG AGASKLLSDA PYNNHFSFSA VDTMLGSAAI APSQSLPFSS SGLSLGLQTN GEMSRNGEIM ESNVSRKSSR GEDVESRSES DNAEAVSGDD
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST
Arabidopsis Description
HDG1HDG1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5Q4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.