Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015996.1-P | Field mustard | nucleus | 99.3 | 99.44 |
| CDX72984 | Canola | nucleus | 98.05 | 98.46 |
| CDX68229 | Canola | nucleus | 89.0 | 90.9 |
| CDY11109 | Canola | nucleus | 87.47 | 88.45 |
| AT1G73360.1 | Thale cress | nucleus | 85.65 | 85.18 |
| Os06t0208100-00 | Rice | nucleus | 13.51 | 75.19 |
| CDX96744 | Canola | nucleus | 66.71 | 71.17 |
| CDY19185 | Canola | nucleus | 67.13 | 70.67 |
| CDY26205 | Canola | nucleus | 67.41 | 70.14 |
| CDY26204 | Canola | nucleus | 62.12 | 70.02 |
| CDX83884 | Canola | nucleus | 66.3 | 69.49 |
| CDY42097 | Canola | nucleus | 49.3 | 68.47 |
| VIT_17s0053g00780.t01 | Wine grape | nucleus | 65.46 | 66.2 |
| KRH09477 | Soybean | nucleus | 66.16 | 66.16 |
| KRH38939 | Soybean | nucleus | 65.88 | 65.51 |
| PGSC0003DMT400069312 | Potato | nucleus | 62.4 | 62.66 |
| Solyc03g098200.2.1 | Tomato | nucleus | 62.81 | 62.55 |
| Solyc06g072310.2.1 | Tomato | nucleus | 62.12 | 62.2 |
| KRH60596 | Soybean | nucleus | 61.28 | 61.71 |
| KRH41898 | Soybean | nucleus | 61.42 | 61.16 |
| GSMUA_Achr10P... | Banana | nucleus | 55.99 | 56.54 |
| TraesCS6D01G304300.1 | Wheat | nucleus | 52.65 | 55.18 |
| TraesCS6A01G324500.1 | Wheat | nucleus | 52.51 | 55.04 |
| GSMUA_Achr6P05990_001 | Banana | nucleus | 45.96 | 54.73 |
| Zm00001d018225_P001 | Maize | nucleus | 52.65 | 54.62 |
| Zm00001d052133_P001 | Maize | nucleus | 52.92 | 54.44 |
| EES05874 | Sorghum | nucleus | 53.2 | 54.03 |
| TraesCS6B01G354900.3 | Wheat | nucleus | 52.37 | 53.95 |
| GSMUA_Achr7P11310_001 | Banana | nucleus | 55.01 | 53.67 |
| GSMUA_Achr2P15140_001 | Banana | nucleus | 55.15 | 53.59 |
| Zm00001d044973_P001 | Maize | nucleus | 50.97 | 53.12 |
| Os06t0207966-00 | Rice | plastid | 19.36 | 52.85 |
| Zm00001d037140_P004 | Maize | nucleus | 50.56 | 52.84 |
| GSMUA_Achr10P... | Banana | nucleus | 49.72 | 52.35 |
| EER89393 | Sorghum | nucleus | 50.56 | 51.86 |
| CDX90879 | Canola | nucleus | 45.54 | 45.67 |
| TraesCS7A01G167900.1 | Wheat | nucleus | 46.1 | 45.66 |
| CDY06167 | Canola | nucleus | 45.68 | 45.56 |
| TraesCS7B01G072700.1 | Wheat | nucleus | 46.24 | 45.48 |
| CDY21319 | Canola | nucleus | 45.26 | 45.39 |
| TraesCS7D01G168700.1 | Wheat | nucleus | 46.24 | 45.36 |
| CDY27417 | Canola | nucleus | 44.85 | 45.1 |
| CDX76399 | Canola | nucleus | 44.85 | 45.03 |
| CDX98703 | Canola | nucleus | 43.04 | 44.46 |
| CDX94054 | Canola | nucleus | 43.04 | 44.46 |
| CDY66622 | Canola | nucleus | 45.13 | 44.32 |
| CDY16639 | Canola | nucleus | 45.13 | 44.2 |
| CDX94586 | Canola | nucleus | 44.85 | 43.99 |
| CDY10041 | Canola | nucleus | 45.68 | 43.91 |
| CDX79091 | Canola | nucleus | 44.99 | 43.3 |
| CDY71572 | Canola | nucleus | 23.4 | 42.75 |
| CDY18903 | Canola | nucleus | 41.78 | 42.55 |
| CDX74762 | Canola | nucleus | 41.64 | 42.23 |
| CDY23096 | Canola | nucleus | 7.66 | 41.67 |
| CDY07201 | Canola | nucleus | 44.71 | 40.74 |
| CDY31916 | Canola | nucleus | 38.16 | 40.71 |
| CDY49515 | Canola | plasma membrane | 45.96 | 40.69 |
| CDX74347 | Canola | nucleus | 44.85 | 40.61 |
| CDY51143 | Canola | nucleus | 44.57 | 40.51 |
| CDX91894 | Canola | nucleus | 44.71 | 40.43 |
| CDY00515 | Canola | nucleus | 37.6 | 40.12 |
| CDY46842 | Canola | nucleus | 46.1 | 39.88 |
| CDX67855 | Canola | nucleus | 43.31 | 39.87 |
| CDY45684 | Canola | nucleus | 43.31 | 39.67 |
| CDY48272 | Canola | nucleus | 38.02 | 38.78 |
| CDY12213 | Canola | nucleus | 38.16 | 38.48 |
| CDX85461 | Canola | cytosol | 37.19 | 37.87 |
| CDX76559 | Canola | nucleus | 38.44 | 37.6 |
| CDY08866 | Canola | nucleus | 38.02 | 37.09 |
| CDY43458 | Canola | nucleus | 41.92 | 37.07 |
| CDY33492 | Canola | nucleus | 40.95 | 36.93 |
| CDY19129 | Canola | nucleus | 37.19 | 36.73 |
| CDX77711 | Canola | nucleus | 42.06 | 36.7 |
| CDY03177 | Canola | nucleus | 42.2 | 36.68 |
| CDY30748 | Canola | endoplasmic reticulum | 29.8 | 36.46 |
| CDY67945 | Canola | nucleus | 34.82 | 36.28 |
| CDY15339 | Canola | nucleus | 36.91 | 36.25 |
| CDY42301 | Canola | nucleus | 34.68 | 36.09 |
| CDY02713 | Canola | nucleus | 37.05 | 35.99 |
| CDY43137 | Canola | nucleus | 34.4 | 35.85 |
| CDY62389 | Canola | cytosol | 24.37 | 35.79 |
| CDY44946 | Canola | nucleus | 32.03 | 35.49 |
| CDY49937 | Canola | nucleus | 34.26 | 35.45 |
| CDY53691 | Canola | nucleus | 34.96 | 35.35 |
| CDY21211 | Canola | nucleus | 33.98 | 35.16 |
| CDY16938 | Canola | nucleus | 31.62 | 34.39 |
| CDY69499 | Canola | cytosol | 14.48 | 34.21 |
| CDX79408 | Canola | nucleus | 35.79 | 32.95 |
| CDX67929 | Canola | nucleus | 35.52 | 32.57 |
| CDX89415 | Canola | cytosol, mitochondrion | 7.94 | 32.02 |
| CDY39874 | Canola | plasma membrane | 8.08 | 30.21 |
| CDX89416 | Canola | nucleus | 24.65 | 27.27 |
| CDX94443 | Canola | cytosol | 23.26 | 26.59 |
| TraesCSU01G150000.1 | Wheat | nucleus | 7.8 | 25.69 |
| TraesCSU01G244000.1 | Wheat | nucleus | 6.55 | 22.82 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | Gene3D:3.30.530.20 | GO:A0A078E5A4 | EnsemblPlants:CDX96471 | ProteinID:CDX96471 |
| ProteinID:CDX96471.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00102644001 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR002913 |
| InterPro:IPR023393 | PFAM:PF00046 | PFAM:PF01852 | ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS50848 |
| PANTHER:PTHR24326 | PANTHER:PTHR24326:SF490 | SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 | SUPFAM:SSF55961 |
| InterPro:START-like_dom_sf | InterPro:START_lipid-bd_dom | UniParc:UPI0004EDF70C | SEG:seg | : | : |
Description
BnaA07g30820D
Coordinates
chrLK031894:-:975257..979217
Molecular Weight (calculated)
78574.9 Da
IEP (calculated)
6.747
GRAVY (calculated)
-0.400
Length
718 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFVGGVGGS GSGGGDGGGS GSGSQQHHDG SETDRKKKRY HRHTAQQIQR LESSFKECPH PDDKQRNQLS RELGLAPRQI KFWFQNRRTQ LKAQHERADN
101: NALKAENDKI RCENIAIREA IKHAICPNCG GPPVNEDPYF DEHKLRIENA HLRDELERMS TVASKYMGRP ISSHLSTLHP LHISPLDLSM TGPSLDFDLL
201: PGSSMHSHPN NNLATISEMD KPLMNDIALT AMEELLRLFN TNEPLWTRGD GGREILDLGS YENLFPRSGN RGKNHNVRTE ASRSSGIVFM NAMTLVDMFM
301: DGVKWGELFP CIVASSKTLA VVSSGMGGTH EGALHLMYEE MAVLSPLVAT REFCELRYCQ MIEQGSWIVV NVSYHLPQFV SQSSNSYKFP SGCLIQDMPN
401: GYSKVTWVEH VETEEKEQTH ELYREMIHKG IAFGAERWVT TLQRMCERFA SLLAPATSSR DLGGVIPSPE GKRSMMRLAH RMVSNYCISV SRSNNTHSTV
501: VAELNEVGVR VTAHKSPEPN GTILCAATTF WLPNSPQNVF NFLKDERTRP QWDVLSNRNA VQEVAHIANG SHPGCCISVL RASNASQSQS NNMLILQETS
601: IDSSGALVVY SPVDLPALNI AMSGDDTSYI PLLSSGFAIS PDGNHSSSTT EQGGGASTSS GFGGGGSLIT VGFQIMVSNL PSAKLNMESV ETVNNLIGTT
701: VHQIKTGLNN CPSGSTTA
101: NALKAENDKI RCENIAIREA IKHAICPNCG GPPVNEDPYF DEHKLRIENA HLRDELERMS TVASKYMGRP ISSHLSTLHP LHISPLDLSM TGPSLDFDLL
201: PGSSMHSHPN NNLATISEMD KPLMNDIALT AMEELLRLFN TNEPLWTRGD GGREILDLGS YENLFPRSGN RGKNHNVRTE ASRSSGIVFM NAMTLVDMFM
301: DGVKWGELFP CIVASSKTLA VVSSGMGGTH EGALHLMYEE MAVLSPLVAT REFCELRYCQ MIEQGSWIVV NVSYHLPQFV SQSSNSYKFP SGCLIQDMPN
401: GYSKVTWVEH VETEEKEQTH ELYREMIHKG IAFGAERWVT TLQRMCERFA SLLAPATSSR DLGGVIPSPE GKRSMMRLAH RMVSNYCISV SRSNNTHSTV
501: VAELNEVGVR VTAHKSPEPN GTILCAATTF WLPNSPQNVF NFLKDERTRP QWDVLSNRNA VQEVAHIANG SHPGCCISVL RASNASQSQS NNMLILQETS
601: IDSSGALVVY SPVDLPALNI AMSGDDTSYI PLLSSGFAIS PDGNHSSSTT EQGGGASTSS GFGGGGSLIT VGFQIMVSNL PSAKLNMESV ETVNNLIGTT
701: VHQIKTGLNN CPSGSTTA
001: MSFVVGVGGS GSGSGGDGGG SHHHDGSETD RKKKRYHRHT AQQIQRLESS FKECPHPDEK QRNQLSRELG LAPRQIKFWF QNRRTQLKAQ HERADNSALK
101: AENDKIRCEN IAIREALKHA ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP LDLSMTSLTG CGPFGHGPSL
201: DFDLLPGSSM AVGPNNNLQS QPNLAISDMD KPIMTGIALT AMEELLRLLQ TNEPLWTRTD GCRDILNLGS YENVFPRSSN RGKNQNFRVE ASRSSGIVFM
301: NAMALVDMFM DCVKWTELFP SIIAASKTLA VISSGMGGTH EGALHLLYEE MEVLSPLVAT REFCELRYCQ QTEQGSWIVV NVSYDLPQFV SHSQSYRFPS
401: GCLIQDMPNG YSKVTWVEHI ETEEKELVHE LYREIIHRGI AFGADRWVTT LQRMCERFAS LSVPASSSRD LGGVILSPEG KRSMMRLAQR MISNYCLSVS
501: RSNNTRSTVV SELNEVGIRV TAHKSPEPNG TVLCAATTFW LPNSPQNVFN FLKDERTRPQ WDVLSNGNAV QEVAHISNGS HPGNCISVLR GSNATHSNNM
601: LILQESSTDS SGAFVVYSPV DLAALNIAMS GEDPSYIPLL SSGFTISPDG NGSNSEQGGA STSSGRASAS GSLITVGFQI MVSNLPTAKL NMESVETVNN
701: LIGTTVHQIK TALSGPTAST TA
101: AENDKIRCEN IAIREALKHA ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP LDLSMTSLTG CGPFGHGPSL
201: DFDLLPGSSM AVGPNNNLQS QPNLAISDMD KPIMTGIALT AMEELLRLLQ TNEPLWTRTD GCRDILNLGS YENVFPRSSN RGKNQNFRVE ASRSSGIVFM
301: NAMALVDMFM DCVKWTELFP SIIAASKTLA VISSGMGGTH EGALHLLYEE MEVLSPLVAT REFCELRYCQ QTEQGSWIVV NVSYDLPQFV SHSQSYRFPS
401: GCLIQDMPNG YSKVTWVEHI ETEEKELVHE LYREIIHRGI AFGADRWVTT LQRMCERFAS LSVPASSSRD LGGVILSPEG KRSMMRLAQR MISNYCLSVS
501: RSNNTRSTVV SELNEVGIRV TAHKSPEPNG TVLCAATTFW LPNSPQNVFN FLKDERTRPQ WDVLSNGNAV QEVAHISNGS HPGNCISVLR GSNATHSNNM
601: LILQESSTDS SGAFVVYSPV DLAALNIAMS GEDPSYIPLL SSGFTISPDG NGSNSEQGGA STSSGRASAS GSLITVGFQI MVSNLPTAKL NMESVETVNN
701: LIGTTVHQIK TALSGPTAST TA
Arabidopsis Description
HDG11Homeobox-leucine zipper protein HDG11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX31]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.