Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 4
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67929 | Canola | nucleus | 97.82 | 97.45 |
| AT1G79840.2 | Thale cress | nucleus, plastid | 89.74 | 90.21 |
| KRH09884 | Soybean | plastid | 62.56 | 64.98 |
| VIT_09s0002g04340.t01 | Wine grape | nucleus | 62.18 | 64.67 |
| KRH23432 | Soybean | plastid | 62.44 | 63.91 |
| KRH44348 | Soybean | nucleus | 60.0 | 62.57 |
| KRH47277 | Soybean | nucleus | 60.13 | 62.45 |
| Solyc03g120620.2.1 | Tomato | nucleus | 59.36 | 59.74 |
| PGSC0003DMT400006770 | Potato | nucleus | 59.1 | 59.72 |
| Os01t0760800-00 | Rice | nucleus | 10.26 | 59.7 |
| GSMUA_Achr3P15400_001 | Banana | nucleus | 55.0 | 57.28 |
| GSMUA_Achr8P27340_001 | Banana | nucleus | 53.85 | 56.07 |
| HORVU0Hr1G006920.1 | Barley | nucleus | 7.05 | 55.56 |
| HORVU3Hr1G073290.1 | Barley | nucleus | 43.33 | 51.52 |
| TraesCS3B01G331200.1 | Wheat | nucleus | 49.23 | 50.86 |
| TraesCS3A01G305300.1 | Wheat | nucleus | 48.97 | 50.2 |
| TraesCS3D01G296500.3 | Wheat | nucleus | 46.28 | 45.47 |
| OQU87592 | Sorghum | nucleus | 40.26 | 44.16 |
| CDY23096 | Canola | nucleus | 7.18 | 42.42 |
| CDX74762 | Canola | nucleus | 38.21 | 42.09 |
| CDY18903 | Canola | nucleus | 37.69 | 41.7 |
| CDX98703 | Canola | nucleus | 36.79 | 41.3 |
| CDX76399 | Canola | nucleus | 37.82 | 41.26 |
| CDX94054 | Canola | nucleus | 36.54 | 41.01 |
| CDX90879 | Canola | nucleus | 37.05 | 40.36 |
| CDY27417 | Canola | nucleus | 36.92 | 40.34 |
| CDY06167 | Canola | nucleus | 37.18 | 40.28 |
| CDY21319 | Canola | nucleus | 36.92 | 40.22 |
| CDY16639 | Canola | nucleus | 36.92 | 39.29 |
| CDX94586 | Canola | nucleus | 36.79 | 39.21 |
| CDY66622 | Canola | nucleus | 36.67 | 39.12 |
| CDY10041 | Canola | nucleus | 37.31 | 38.96 |
| CDX79091 | Canola | nucleus | 37.05 | 38.74 |
| CDY31916 | Canola | nucleus | 33.21 | 38.48 |
| CDY51143 | Canola | nucleus | 38.85 | 38.35 |
| CDY07201 | Canola | nucleus | 38.59 | 38.2 |
| CDX74347 | Canola | nucleus | 38.59 | 37.96 |
| CDX67855 | Canola | nucleus | 37.82 | 37.82 |
| CDX91894 | Canola | nucleus | 38.46 | 37.78 |
| CDY45684 | Canola | nucleus | 37.69 | 37.5 |
| CDY00515 | Canola | nucleus | 32.31 | 37.44 |
| CDY71572 | Canola | nucleus | 18.72 | 37.15 |
| CDX96744 | Canola | nucleus | 32.05 | 37.15 |
| CDY42097 | Canola | nucleus | 24.49 | 36.94 |
| CDX83884 | Canola | nucleus | 32.18 | 36.64 |
| CDY19129 | Canola | nucleus | 33.85 | 36.31 |
| CDX68229 | Canola | nucleus | 32.69 | 36.27 |
| CDY15339 | Canola | nucleus | 33.97 | 36.25 |
| CDY49515 | Canola | plasma membrane | 37.69 | 36.25 |
| CDY19185 | Canola | nucleus | 31.67 | 36.22 |
| CDY26204 | Canola | nucleus | 29.36 | 35.95 |
| CDY11109 | Canola | nucleus | 32.69 | 35.92 |
| CDY26205 | Canola | nucleus | 31.67 | 35.8 |
| CDX96471 | Canola | nucleus | 32.95 | 35.79 |
| CDX72984 | Canola | nucleus | 32.56 | 35.52 |
| CDY46842 | Canola | nucleus | 37.69 | 35.42 |
| CDY48272 | Canola | nucleus | 31.54 | 34.94 |
| CDX89415 | Canola | cytosol, mitochondrion | 7.95 | 34.83 |
| CDY12213 | Canola | nucleus | 31.54 | 34.55 |
| CDY30748 | Canola | endoplasmic reticulum | 24.87 | 33.05 |
| CDY69499 | Canola | cytosol | 12.82 | 32.89 |
| CDY62389 | Canola | cytosol | 20.13 | 32.11 |
| CDX76559 | Canola | nucleus | 30.13 | 32.02 |
| CDY08866 | Canola | nucleus | 29.87 | 31.66 |
| CDX85461 | Canola | cytosol | 28.59 | 31.63 |
| CDY43458 | Canola | nucleus | 32.44 | 31.16 |
| CDY03177 | Canola | nucleus | 32.44 | 30.63 |
| CDY53691 | Canola | nucleus | 27.82 | 30.56 |
| CDY42301 | Canola | nucleus | 26.92 | 30.43 |
| CDX77711 | Canola | nucleus | 31.92 | 30.26 |
| CDY67945 | Canola | nucleus | 26.54 | 30.04 |
| CDY33492 | Canola | nucleus | 30.64 | 30.03 |
| CDY43137 | Canola | nucleus | 26.41 | 29.9 |
| CDY02713 | Canola | nucleus | 28.21 | 29.77 |
| CDY44946 | Canola | nucleus | 24.1 | 29.01 |
| CDY49937 | Canola | nucleus | 25.64 | 28.82 |
| CDY16938 | Canola | nucleus | 24.23 | 28.64 |
| CDY21211 | Canola | nucleus | 25.26 | 28.39 |
| CDY39874 | Canola | plasma membrane | 6.67 | 27.08 |
| CDX89416 | Canola | nucleus | 22.05 | 26.5 |
| CDX94443 | Canola | cytosol | 20.26 | 25.16 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | Gene3D:3.30.530.20 | GO:A0A078CW61 | EnsemblPlants:CDX79408 | ProteinID:CDX79408 |
| ProteinID:CDX79408.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00132125001 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR002913 |
| InterPro:IPR023393 | PFAM:PF00046 | PFAM:PF01852 | ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS50848 |
| PANTHER:PTHR24326 | PANTHER:PTHR24326:SF482 | SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 | SUPFAM:SSF55961 |
| InterPro:START-like_dom_sf | InterPro:START_lipid-bd_dom | UniParc:UPI0004EE7EA0 | SEG:seg | : | : |
Description
BnaC06g18950D
Coordinates
chrLK031817:-:1984247..1988587
Molecular Weight (calculated)
87490.9 Da
IEP (calculated)
8.140
GRAVY (calculated)
-0.502
Length
780 amino acids
Sequence
(BLAST)
(BLAST)
001: MFKYLIFNRF WPCFKVIKRG KIKQIKISER MSMAVEMSSK QPTKDFFSSP ALSLSLAGIF RNASSGSTNP EEDFLGRRVA DDEDRTVEMS SENSGPTRSR
101: SEDNLEGEED QEEEDGAGNK GNKRKRKKYH RHTTDQIRHM EALFKETPHP DEKQRQQLSK QLGLAPRQVK FWFQNRRTQI KAIQERHENS LLKAELEKLR
201: EENKAMRESF SKANSSSCPN CGGGGGGGGS PDDLHLENTK LKAELDKLRA ALGRTPYPLQ ASCSDDQHRR VGSLELYTGV FALEKSRIVE IANRATLEVQ
301: KMATSGEPLW LRSLETGREI LNYDEYLKEF PQAQASSFHG RKTIEASRDV GIVFMDAHKL AQSFMDVEQW KEMFACLISK AVTVDVIRQG EGPSRIDGAI
401: QLMFGEMQLL TPVVPTREVY FVRSCRQLSP EKWVIVDVSV SVEEDNNSTE KEGSLLRCRK RPSGCIIEDT SNGHSKVTWV EHLDLSASTV QPLFRSFVNT
501: GLAFGARHWV ATLQLHCERL VFFMATNVPT KDSLGVTTLA GRKSVLKMAQ RMTQSFYRAI AASSYHQWNK ITTKTGQDMR VSSRKNLHDP GEPTGVIVCA
601: SSSLWLPVSP TLLFDFFRDE TRRHEWDALS NGAHVQSIVS LSKGQDRGNS VSIQTVKSRE KSTWVLQDSC TNSYESVVVY APVDINTTQL VIAGHDPSNI
701: QILPCGFSII PDGVESRQLV ISSAQEDRNT QGGSLLTLAL QTLVNQSPAA KLNMESVESV TNLVSVTLHN IKRSLQIEDC
101: SEDNLEGEED QEEEDGAGNK GNKRKRKKYH RHTTDQIRHM EALFKETPHP DEKQRQQLSK QLGLAPRQVK FWFQNRRTQI KAIQERHENS LLKAELEKLR
201: EENKAMRESF SKANSSSCPN CGGGGGGGGS PDDLHLENTK LKAELDKLRA ALGRTPYPLQ ASCSDDQHRR VGSLELYTGV FALEKSRIVE IANRATLEVQ
301: KMATSGEPLW LRSLETGREI LNYDEYLKEF PQAQASSFHG RKTIEASRDV GIVFMDAHKL AQSFMDVEQW KEMFACLISK AVTVDVIRQG EGPSRIDGAI
401: QLMFGEMQLL TPVVPTREVY FVRSCRQLSP EKWVIVDVSV SVEEDNNSTE KEGSLLRCRK RPSGCIIEDT SNGHSKVTWV EHLDLSASTV QPLFRSFVNT
501: GLAFGARHWV ATLQLHCERL VFFMATNVPT KDSLGVTTLA GRKSVLKMAQ RMTQSFYRAI AASSYHQWNK ITTKTGQDMR VSSRKNLHDP GEPTGVIVCA
601: SSSLWLPVSP TLLFDFFRDE TRRHEWDALS NGAHVQSIVS LSKGQDRGNS VSIQTVKSRE KSTWVLQDSC TNSYESVVVY APVDINTTQL VIAGHDPSNI
701: QILPCGFSII PDGVESRQLV ISSAQEDRNT QGGSLLTLAL QTLVNQSPAA KLNMESVESV TNLVSVTLHN IKRSLQIEDC
001: MKSIDGCQCC SWPCFKLLNS KKLARDRICM SMAVDMSSKQ PTKDFFSSPA LSLSLAGIFR NASSGSTNPE EDFLGRRVVD DEDRTVEMSS ENSGPTRSRS
101: EEDLEGEDHD DEEEEEEDGA AGNKGTNKRK RKKYHRHTTD QIRHMEALFK ETPHPDEKQR QQLSKQLGLA PRQVKFWFQN RRTQIKAIQE RHENSLLKAE
201: LEKLREENKA MRESFSKANS SCPNCGGGPD DLHLENSKLK AELDKLRAAL GRTPYPLQAS CSDDQEHRLG SLDFYTGVFA LEKSRIAEIS NRATLELQKM
301: ATSGEPMWLR SVETGREILN YDEYLKEFPQ AQASSFPGRK TIEASRDAGI VFMDAHKLAQ SFMDVGQWKE TFACLISKAA TVDVIRQGEG PSRIDGAIQL
401: MFGEMQLLTP VVPTREVYFV RSCRQLSPEK WAIVDVSVSV EDSNTEKEAS LLKCRKLPSG CIIEDTSNGH SKVTWVEHLD VSASTVQPLF RSLVNTGLAF
501: GARHWVATLQ LHCERLVFFM ATNVPTKDSL GVTTLAGRKS VLKMAQRMTQ SFYRAIAASS YHQWTKITTK TGQDMRVSSR KNLHDPGEPT GVIVCASSSL
601: WLPVSPALLF DFFRDEARRH EWDALSNGAH VQSIANLSKG QDRGNSVAIQ TVKSREKSIW VLQDSSTNSY ESVVVYAPVD INTTQLVLAG HDPSNIQILP
701: SGFSIIPDGV ESRPLVITST QDDRNSQGGS LLTLALQTLI NPSPAAKLNM ESVESVTNLV SVTLHNIKRS LQIEDC
101: EEDLEGEDHD DEEEEEEDGA AGNKGTNKRK RKKYHRHTTD QIRHMEALFK ETPHPDEKQR QQLSKQLGLA PRQVKFWFQN RRTQIKAIQE RHENSLLKAE
201: LEKLREENKA MRESFSKANS SCPNCGGGPD DLHLENSKLK AELDKLRAAL GRTPYPLQAS CSDDQEHRLG SLDFYTGVFA LEKSRIAEIS NRATLELQKM
301: ATSGEPMWLR SVETGREILN YDEYLKEFPQ AQASSFPGRK TIEASRDAGI VFMDAHKLAQ SFMDVGQWKE TFACLISKAA TVDVIRQGEG PSRIDGAIQL
401: MFGEMQLLTP VVPTREVYFV RSCRQLSPEK WAIVDVSVSV EDSNTEKEAS LLKCRKLPSG CIIEDTSNGH SKVTWVEHLD VSASTVQPLF RSLVNTGLAF
501: GARHWVATLQ LHCERLVFFM ATNVPTKDSL GVTTLAGRKS VLKMAQRMTQ SFYRAIAASS YHQWTKITTK TGQDMRVSSR KNLHDPGEPT GVIVCASSSL
601: WLPVSPALLF DFFRDEARRH EWDALSNGAH VQSIANLSKG QDRGNSVAIQ TVKSREKSIW VLQDSSTNSY ESVVVYAPVD INTTQLVLAG HDPSNIQILP
701: SGFSIIPDGV ESRPLVITST QDDRNSQGGS LLTLALQTLI NPSPAAKLNM ESVESVTNLV SVTLHNIKRS LQIEDC
Arabidopsis Description
GL2HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4HQC0]
SUBAcon: [nucleus,plastid]
SUBAcon: [nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.