Factsheet for GSMUA_Achr8P27340_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P15400_001	Banana	nucleus	85.58	85.58
VIT_09s0002g04340.t01	Wine grape	nucleus	67.42	67.33
KRH09884	Soybean	plastid	64.62	64.45
KRH23432	Soybean	plastid	64.62	63.52
Os01t0760800-00	Rice	nucleus	11.35	63.43
KRH44348	Soybean	nucleus	61.42	61.5
KRH47277	Soybean	nucleus	61.55	61.38
PGSC0003DMT400006770	Potato	nucleus	59.81	58.03
Solyc03g120620.2.1	Tomato	nucleus	59.41	57.42
Bra003535.1-P	Field mustard	nucleus	56.07	56.0
HORVU0Hr1G006920.1	Barley	nucleus	7.34	55.56
AT1G79840.2	Thale cress	nucleus, plastid	57.41	55.41
CDX79408	Canola	nucleus	56.07	53.85
CDX67929	Canola	nucleus	55.94	53.51
TraesCS3B01G331200.1	Wheat	nucleus	53.14	52.72
TraesCS3A01G305300.1	Wheat	nucleus	53.54	52.69
HORVU3Hr1G073290.1	Barley	nucleus	46.06	52.59
TraesCS3D01G296500.3	Wheat	nucleus	49.53	46.73
OQU87592	Sorghum	nucleus	43.93	46.27
GSMUA_Achr3P23090_001	Banana	endoplasmic reticulum, plasma membrane	35.11	39.85
GSMUA_Achr1P18760_001	Banana	nucleus	39.79	39.42
GSMUA_Achr10P...	Banana	nucleus	36.58	38.32
GSMUA_Achr11P...	Banana	nucleus	37.92	38.17
GSMUA_Achr5P20050_001	Banana	nucleus	39.92	37.61
GSMUA_Achr8P07310_001	Banana	mitochondrion, nucleus	36.05	37.19
GSMUA_Achr5P10510_001	Banana	nucleus	39.25	36.98
GSMUA_Achr11P...	Banana	nucleus	37.65	36.34
GSMUA_Achr7P00210_001	Banana	nucleus	32.71	36.08
GSMUA_Achr10P...	Banana	nucleus	34.05	35.87
GSMUA_AchrUn_...	Banana	nucleus	36.05	35.11
GSMUA_Achr11P...	Banana	plastid	36.85	34.98
GSMUA_Achr7P11310_001	Banana	nucleus	34.18	34.78
GSMUA_Achr6P05990_001	Banana	nucleus	27.77	34.49
GSMUA_Achr3P12410_001	Banana	nucleus	33.91	34.23
GSMUA_Achr10P...	Banana	nucleus	31.11	34.16
GSMUA_Achr2P15140_001	Banana	nucleus	33.51	33.96
GSMUA_Achr4P19010_001	Banana	nucleus	33.24	31.09
GSMUA_Achr5P14100_001	Banana	nucleus	31.24	30.95

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr8G27340_001	EnsemblPlants:GSMUA_Achr8P27340_001	EnsemblPlants:GSMUA_Achr8T27340_001	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	UniProt:M0TU37	PFAM:PF00046	PFAM:PF01852
ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF272	SMART:SM00234
SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	UniParc:UPI0002948919	SEG:seg

Description

Homeobox-leucine zipper protein GLABRA 2 [Source:GMGC_GENE;Acc:GSMUA_Achr8G27340_001]

Coordinates

chr8:-:30544129..30548360

Molecular Weight (calculated)

83858.9 Da

IEP (calculated)

7.061

GRAVY (calculated)

-0.455

Length

749 amino acids

Sequence
(BLAST)

001: MHQSSMNNNN TPVKDFFASP ALSLSLAGVF RNNAAAVVDV EEGDEASKGG CQREQAEISG ENSGPAGRSD EDRESNESQE ENREVGNNRK RKKYHRHTAE
101: QIREMEALFK ESPHPDEKQR QQLSNQLGLS ARQVKFWFQN RRTQIKAVQE RHENSLRKSE IEKLQEENRT MREKIKKGCC PNCGYTTLSN GTTITTEEQQ
201: HHIENTRLKA EIKKLRRMLG SIPDGNTSPS SSCSAGADQN KSSLDSCSRF LGPEKFRILE IVNVALEELT KMATAQEPLW VRSVETGREI LNYDEYVKEF
301: SPDMSRNGCV RNIEASRETG IVFFDMPRLV QAFMDVNQWK EFFPCLISKA VIVDIISKGL GDSKDGTIQL MFAEIQMLTP LVPTREIYFV RYCKKLCPTR
401: WAILDISIDK LEENIDASLM KCRKRPSGCI IEDQDTGHCK VTQLSYSCFP LHCGIPTLYH PIVTSGLAFG ARHWMATLRL QCERSVFFMA TNVPTRDCNG
501: VSTLAGRKSI LKLGQRMTSC FCQNIGASGH HKWTKVSTKG GDEIRFTSRK NINDPGEPLG LIICSVLSTW LPVPAMSLFN FLRDDSRRTE WDIMLTPSPT
601: QTMVNLVKGQ DRGNSVTIYS LQTTTSSERT NIWVLQDCST NSYESMVVFA PVEIDGTQSV MNGCDSSSLA ILPSGFSILP DGLETRPLVI TSRPQERTME
701: GGSLLTVAFQ ILADASPVAR PTTESVETIN TLVSCTLQNI KKALQCEDG

Best Arabidopsis Sequence Match ( AT1G79840.1 )
(BLAST)

001: MSMAVDMSSK QPTKDFFSSP ALSLSLAGIF RNASSGSTNP EEDFLGRRVV DDEDRTVEMS SENSGPTRSR SEEDLEGEDH DDEEEEEEDG AAGNKGTNKR
101: KRKKYHRHTT DQIRHMEALF KETPHPDEKQ RQQLSKQLGL APRQVKFWFQ NRRTQIKAIQ ERHENSLLKA ELEKLREENK AMRESFSKAN SSCPNCGGGP
201: DDLHLENSKL KAELDKLRAA LGRTPYPLQA SCSDDQEHRL GSLDFYTGVF ALEKSRIAEI SNRATLELQK MATSGEPMWL RSVETGREIL NYDEYLKEFP
301: QAQASSFPGR KTIEASRDAG IVFMDAHKLA QSFMDVGQWK ETFACLISKA ATVDVIRQGE GPSRIDGAIQ LMFGEMQLLT PVVPTREVYF VRSCRQLSPE
401: KWAIVDVSVS VEDSNTEKEA SLLKCRKLPS GCIIEDTSNG HSKVTWVEHL DVSASTVQPL FRSLVNTGLA FGARHWVATL QLHCERLVFF MATNVPTKDS
501: LGVTTLAGRK SVLKMAQRMT QSFYRAIAAS SYHQWTKITT KTGQDMRVSS RKNLHDPGEP TGVIVCASSS LWLPVSPALL FDFFRDEARR HEWDALSNGA
601: HVQSIANLSK GQDRGNSVAI QTVKSREKSI WVLQDSSTNS YESVVVYAPV DINTTQLVLA GHDPSNIQIL PSGFSIIPDG VESRPLVITS TQDDRNSQGG
701: SLLTLALQTL INPSPAAKLN MESVESVTNL VSVTLHNIKR SLQIEDC

Arabidopsis Description

GL2HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4HQC0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.