Factsheet for GSMUA_Achr4P19010_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr2P15140_001
GSMUA_Achr6P05990_001
GSMUA_Achr6P08260_001
GSMUA_Achr6P16290_001
GSMUA_Achr7P11310_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17710.1	GSMUA_Achr10P...	AT1G73360.1	21798944
AT4G17710.1	GSMUA_Achr10P...	AT1G73360.1	21798944
AT4G17710.1	GSMUA_Achr2P15140_001	AT1G73360.1	21798944
AT4G17710.1	GSMUA_Achr6P05990_001	AT1G73360.1	21798944
AT4G17710.1	GSMUA_Achr7P11310_001	AT1G73360.1	21798944
AT4G17710.1	GSMUA_Achr6P08260_001	AT3G11590.1	21798944
AT4G17710.1	GSMUA_Achr6P16290_001	AT3G11590.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P14100_001	Banana	nucleus	79.78	84.52
VIT_02s0012g02030.t01	Wine grape	nucleus	64.42	64.66
KRH39579	Soybean	nucleus	60.67	60.75
KRH74360	Soybean	nucleus	59.8	60.71
PGSC0003DMT400006155	Potato	nucleus	55.31	57.98
KXG38837	Sorghum	nucleus	63.8	57.94
TraesCS1D01G197300.1	Wheat	nucleus	63.42	57.53
Os10t0575600-01	Rice	nucleus	63.17	57.37
HORVU1Hr1G050620.2	Barley	nucleus	63.05	57.06
TraesCS1A01G193400.1	Wheat	nucleus, plastid	62.17	57.04
Solyc08g076370.2.1	Tomato	nucleus	59.8	56.89
TraesCS1B01G208400.1	Wheat	nucleus	63.17	56.85
Zm00001d030069_P004	Maize	nucleus	62.3	56.45
Bra017519.1-P	Field mustard	nucleus	52.43	51.47
CDY43458	Canola	nucleus	51.94	51.23
AT5G46880.3	Thale cress	nucleus	52.81	51.21
CDY03177	Canola	nucleus	52.18	50.61
Bra024984.1-P	Field mustard	nucleus	50.19	50.57
CDX77711	Canola	nucleus	51.94	50.55
CDY33492	Canola	nucleus	50.19	50.5
AT4G17710.1	Thale cress	nucleus	43.95	49.65
CDY08866	Canola	nucleus	44.07	47.96
GSMUA_Achr3P23090_001	Banana	endoplasmic reticulum, plasma membrane	39.08	47.42
Bra021035.1-P	Field mustard	nucleus	43.2	47.14
CDX76559	Canola	nucleus	43.2	47.14
GSMUA_Achr10P...	Banana	nucleus	40.7	45.85
GSMUA_Achr6P05990_001	Banana	nucleus	34.46	45.77
GSMUA_Achr8P07310_001	Banana	mitochondrion, nucleus	40.57	44.77
GSMUA_Achr7P11310_001	Banana	nucleus	39.95	43.48
GSMUA_Achr10P...	Banana	nucleus	36.95	43.4
GSMUA_Achr10P...	Banana	nucleus	38.2	42.8
GSMUA_Achr2P15140_001	Banana	nucleus	39.2	42.49
GSMUA_Achr11P...	Banana	plastid	41.07	41.7
GSMUA_Achr11P...	Banana	nucleus	38.33	41.26
GSMUA_AchrUn_...	Banana	nucleus	39.58	41.22
GSMUA_Achr1P18760_001	Banana	nucleus	38.7	41.01
GSMUA_Achr7P00210_001	Banana	nucleus	34.71	40.94
GSMUA_Achr11P...	Banana	nucleus	39.2	40.46
GSMUA_Achr5P20050_001	Banana	nucleus	39.58	39.87
GSMUA_Achr5P10510_001	Banana	nucleus	38.45	38.74
GSMUA_Achr3P12410_001	Banana	nucleus	34.21	36.93
GSMUA_Achr3P15400_001	Banana	nucleus	34.33	36.72
GSMUA_Achr8P27340_001	Banana	nucleus	31.09	33.24

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr4G19010_001	EnsemblPlants:GSMUA_Achr4P19010_001	EnsemblPlants:GSMUA_Achr4T19010_001	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	UniProt:M0SQ64	PFAM:PF00046	PFAM:PF01852
ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF267	SMART:SM00234
SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	UniParc:UPI0002960D88	SEG:seg

Description

Homeobox-leucine zipper protein ROC3 [Source:GMGC_GENE;Acc:GSMUA_Achr4G19010_001]

Coordinates

chr4:-:20045866..20050132

Molecular Weight (calculated)

88176.3 Da

IEP (calculated)

6.131

GRAVY (calculated)

-0.234

Length

801 amino acids

Sequence
(BLAST)

001: MYGDCQVLSS MVSGNVASPD SLFASPIQNP NLGFMANMPP FNAFSSIIPK EEGLMLIGRG VSKEEEMESG SGSGPLDGVL SCGEEHDNEL QQQPPSQQQQ
101: QPVAKRKRYH RHTTRQIQEM EALFKECPHP DEKQRMKLSQ ELSLKPRQVK FWFQNRRTQM KAQQDRADNV VLRAENESLK NENFRLQAAI QNVVCPNCGG
201: PAILGEMSFD EQQLRIENAR LKDELERLSC IASRYSGRQQ QPLVVSCNDI IPVPQISDQA SPFSGMLILD QEKPLVLDLA ITAADHLVRM CRTNGPLWIR
301: RDGRTTEVLD LEEHAKNFSW PMDLKQQHGE IRTEASRDSA MVIMNSITLV DAFLDADKWM GLFPSVVSKA TTVQVLSPGV AGHGNGCLHL LHAELQFLSP
401: LVPAREAHFF RYLQHNSEEG TWIIVDFPVD GCVDGLQTSL PWYRRRTSGC VIQDMPNGYS KVQNELRFLS AKLMFSIKSS VLIPFINDVM WVEHAEVEDK
501: PVHQIFDQFV STGVAFGATR WVSTLQRQCE RLASLLARNI ADLGVIPTPE ARKNMMKLSQ RMMRTFCASV HASGMQSWTA LSESSDDTIR VTTRKNTEPG
601: QPNGVILTAV STTWLPFSHQ QVFELLTDEQ RRSQLDVLSS GNSLHEVAHI ANGSHPRNCV SLLRVNAASN SSHSVELLLQ ESSTHPSGGS IVVYATIDVD
701: AVQVAMSGED PSYIPLLPTG FVISPAAPPN GVISSSDGSA STIGCLLTIG MQVLASAVPS AKLNLSSVTA INNHLRNTVQ QISAVLGGGA VAEPAAMAPE
801: Q

Best Arabidopsis Sequence Match ( AT5G46880.3 )
(BLAST)

001: MLTMGEGNVM TSNNRFASPP QQPSSSSPGT IQNPNFNFIP FNSYSSIIPK EEHGMMSMMM MMGDGTVEEM MENGSAGGSF GSGSEQAEDP KFGNESDVNE
101: LHDDEQPPPA KKKRYHRHTN RQIQEMEALF KENPHPDDKQ RKRLSAELGL KPRQVKFWFQ NRRTQMKAQQ DRNENVMLRA ENDNLKSENC HLQAELRCLS
201: CPSCGGPTVL GDIPFNEIHI ENCRLREELD RLCCIASRYT GRPMQSMPPS QPLINPSPML PHHQPSLELD MSVYAGNFPE QSCTDMMMLP PQDTACFFPD
301: QTANNNNNNN MLLADEEKVI AMEFAVSCVQ ELTKMCDTEE PLWIKKKSDK IGGEILCLNE EEYMRLFPWP MENQNNKGDF LREASKANAV VIMNSITLVD
401: AFLNADKWSE MFCSIVARAK TVQIISSGVS GASGSLLLMF AELQVLSPLV PTREAYFLRY VEQNAETGNW AIVDFPIDSF HDQMQPMNTI THEYKRKPSG
501: CIIQDMPNGY SQVKWVEHVE VDEKHVHETF AEYVKSGMAF GANRWLDVLQ RQCERIASLM ARNITDLGVI SSAEARRNIM RLSQRLVKTF CVNISTAYGQ
601: SWTALSETTK DTVRITTRKM CEPGQPTGVV LCAVSTTWLP FSHHQVFDLI RDQHHQSLLE VLFNGNSPHE VAHIANGSHP GNCISLLRIN VASNSWHNVE
701: LMLQESCIDN SGSLIVYSTV DVDSIQQAMN GEDSSNIPIL PLGFSIVPVN PPEGISVNSH SPPSCLLTVG IQVLASNVPT AKPNLSTVTT INNHLCATVN
801: QITSALSNTI TPVIASSADV SNQEVS

Arabidopsis Description

HDG5Homeobox-leucine zipper protein HDG5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJS2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.