Factsheet for AT5G46880.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017519.1-P	Field mustard	nucleus	85.96	87.01
CDY03177	Canola	nucleus	86.08	86.08
CDY33492	Canola	nucleus	82.93	86.06
CDY43458	Canola	nucleus	84.26	85.71
Bra024984.1-P	Field mustard	nucleus	82.45	85.66
CDX77711	Canola	nucleus	84.87	85.18
AT4G17710.1	Thale cress	nucleus	53.63	62.48
VIT_02s0012g02030.t01	Wine grape	nucleus	60.17	62.28
KRH74360	Soybean	nucleus	57.14	59.82
KRH39579	Soybean	nucleus	57.26	59.12
PGSC0003DMT400006155	Potato	nucleus	54.0	58.38
Solyc08g076370.2.1	Tomato	nucleus	57.38	56.29
GSMUA_Achr5P14100_001	Banana	nucleus	50.85	55.56
GSMUA_Achr4P19010_001	Banana	nucleus	51.21	52.81
TraesCS1A01G193400.1	Wheat	nucleus, plastid	51.94	49.14
TraesCS1D01G197300.1	Wheat	nucleus	51.82	48.47
HORVU1Hr1G050620.2	Barley	nucleus	51.69	48.25
Os10t0575600-01	Rice	nucleus	51.45	48.19
TraesCS1B01G208400.1	Wheat	nucleus	51.57	47.87
KXG38837	Sorghum	nucleus	50.97	47.73
Zm00001d030069_P004	Maize	nucleus	50.0	46.72
AT1G73360.1	Thale cress	nucleus	38.5	44.04
AT1G17920.1	Thale cress	nucleus	35.59	42.79
AT1G05230.5	Thale cress	nucleus	37.05	42.44
AT4G04890.1	Thale cress	nucleus	38.14	42.4
AT4G21750.3	Thale cress	nucleus	38.26	41.47
AT5G52170.2	Thale cress	nucleus	30.99	37.26
AT4G00730.1	Thale cress	nucleus	35.84	36.91
AT3G61150.1	Thale cress	nucleus	35.23	36.01
AT2G32370.1	Thale cress	nucleus	30.87	35.17
AT1G79840.2	Thale cress	nucleus, plastid	31.48	33.51
AT3G03260.1	Thale cress	nucleus	27.84	32.9
AT4G25530.1	Thale cress	nucleus	26.88	32.36
AT5G17320.1	Thale cress	nucleus	25.79	29.67
AT1G34650.1	Thale cress	nucleus	25.06	29.24
AT5G07260.1	Thale cress	cytosol	18.04	27.54
AT4G26920.1	Thale cress	cytosol, plasma membrane, plastid	12.95	23.21

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	EntrezGene:834733	ProteinID:AED95443.1	ProteinID:ANM68239.1	ProteinID:ANM68240.1
ArrayExpress:AT5G46880	EnsemblPlantsGene:AT5G46880	RefSeq:AT5G46880	TAIR:AT5G46880	RefSeq:AT5G46880-TAIR-G	EnsemblPlants:AT5G46880.3
Unigene:At.50511	ProteinID:BAB10227.1	EMBL:BX841652	ncoils:Coil	GO:GO:0000003	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058	GO:GO:0009791	GO:GO:0009908
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0048497	Symbol:HB-7	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	RefSeq:NP_001318750.1	RefSeq:NP_001330010.1
RefSeq:NP_199499.3	PFAM:PF00046	PFAM:PF01852	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848
PANTHER:PTHR24326	PANTHER:PTHR24326:SF267	UniProt:Q9FJS2	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689
SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	UniParc:UPI0001E9305D	SEG:seg	:	:

Description

HDG5Homeobox-leucine zipper protein HDG5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJS2]

Coordinates

chr5:+:19031350..19035959

Molecular Weight (calculated)

92125.6 Da

IEP (calculated)

5.195

GRAVY (calculated)

-0.375

Length

826 amino acids

Sequence
(BLAST)

001: MLTMGEGNVM TSNNRFASPP QQPSSSSPGT IQNPNFNFIP FNSYSSIIPK EEHGMMSMMM MMGDGTVEEM MENGSAGGSF GSGSEQAEDP KFGNESDVNE
101: LHDDEQPPPA KKKRYHRHTN RQIQEMEALF KENPHPDDKQ RKRLSAELGL KPRQVKFWFQ NRRTQMKAQQ DRNENVMLRA ENDNLKSENC HLQAELRCLS
201: CPSCGGPTVL GDIPFNEIHI ENCRLREELD RLCCIASRYT GRPMQSMPPS QPLINPSPML PHHQPSLELD MSVYAGNFPE QSCTDMMMLP PQDTACFFPD
301: QTANNNNNNN MLLADEEKVI AMEFAVSCVQ ELTKMCDTEE PLWIKKKSDK IGGEILCLNE EEYMRLFPWP MENQNNKGDF LREASKANAV VIMNSITLVD
401: AFLNADKWSE MFCSIVARAK TVQIISSGVS GASGSLLLMF AELQVLSPLV PTREAYFLRY VEQNAETGNW AIVDFPIDSF HDQMQPMNTI THEYKRKPSG
501: CIIQDMPNGY SQVKWVEHVE VDEKHVHETF AEYVKSGMAF GANRWLDVLQ RQCERIASLM ARNITDLGVI SSAEARRNIM RLSQRLVKTF CVNISTAYGQ
601: SWTALSETTK DTVRITTRKM CEPGQPTGVV LCAVSTTWLP FSHHQVFDLI RDQHHQSLLE VLFNGNSPHE VAHIANGSHP GNCISLLRIN VASNSWHNVE
701: LMLQESCIDN SGSLIVYSTV DVDSIQQAMN GEDSSNIPIL PLGFSIVPVN PPEGISVNSH SPPSCLLTVG IQVLASNVPT AKPNLSTVTT INNHLCATVN
801: QITSALSNTI TPVIASSADV SNQEVS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.