Factsheet for AT1G05230.5

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06167	Canola	nucleus	95.01	95.14
Bra032478.1-P	Field mustard	nucleus	94.87	95.13
Bra015401.1-P	Field mustard	nucleus	94.04	94.17
CDY71572	Canola	nucleus	50.49	92.62
CDY10041	Canola	nucleus	95.01	91.7
CDY49515	Canola	plasma membrane	94.17	83.72
CDY46842	Canola	nucleus	94.04	81.69
KRH56105	Soybean	nucleus	80.58	79.7
VIT_12s0059g02310.t01	Wine grape	nucleus	79.61	75.83
KRH25398	Soybean	plastid	80.03	75.82
GSMUA_Achr3P23090_001	Banana	endoplasmic reticulum, plasma membrane	69.35	75.76
KRH22554	Soybean	nucleus	80.86	74.65
KRH26803	Soybean	nucleus	80.31	74.14
Os04t0627000-02	Rice	cytosol, peroxisome	58.67	72.18
AT4G04890.1	Thale cress	nucleus	73.23	71.06
GSMUA_Achr8P07310_001	Banana	mitochondrion, nucleus	70.6	70.11
AT4G21750.3	Thale cress	nucleus	72.95	69.03
GSMUA_Achr10P...	Banana	nucleus	66.71	67.27
EES11464	Sorghum	nucleus	72.68	66.41
EES13460	Sorghum	mitochondrion, nucleus	70.6	65.17
GSMUA_Achr11P...	Banana	plastid	71.01	64.89
TraesCS2B01G497500.1	Wheat	nucleus	69.49	64.65
TraesCS2D01G473700.1	Wheat	nucleus	69.49	64.56
TraesCS2A01G474000.1	Wheat	nucleus	69.49	64.48
Os08t0136100-01	Rice	nucleus	70.18	64.46
Zm00001d049443_P005	Maize	nucleus	71.01	64.32
Zm00001d002234_P003	Maize	nucleus	69.63	63.22
TraesCS7B01G208600.1	Wheat	nucleus	68.1	61.53
TraesCS7A01G308400.1	Wheat	nucleus	67.82	61.43
Zm00001d026351_P003	Maize	nucleus	71.84	61.37
TraesCS7D01G305200.1	Wheat	nucleus	67.68	61.31
Zm00001d000247_P001	Maize	plasma membrane	60.89	61.06
EES14500	Sorghum	nucleus	67.55	59.83
Zm00001d024701_P001	Maize	nucleus	65.6	59.35
AT2G32370.1	Thale cress	nucleus	51.59	51.31
AT4G00730.1	Thale cress	nucleus	51.59	46.38
AT1G73360.1	Thale cress	nucleus	46.05	45.98
AT1G17920.1	Thale cress	nucleus	43.69	45.85
AT3G61150.1	Thale cress	nucleus	50.07	44.68
AT5G52170.2	Thale cress	nucleus	42.3	44.4
Os08t0187500-01	Rice	nucleus	19.28	42.64
AT4G17710.1	Thale cress	nucleus	37.86	38.5
AT3G03260.1	Thale cress	nucleus	36.62	37.77
AT1G79840.2	Thale cress	nucleus, plastid	40.22	37.37
AT5G46880.3	Thale cress	nucleus	42.44	37.05
AT4G25530.1	Thale cress	nucleus	33.98	35.71
AT5G17320.1	Thale cress	nucleus	33.43	33.57
AT1G34650.1	Thale cress	nucleus	32.18	32.77
AT5G07260.1	Thale cress	cytosol	20.67	27.54
AT4G26920.1	Thale cress	cytosol, plasma membrane, plastid	15.95	24.95

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	EntrezGene:839256	ProteinID:AAB71455.1	ProteinID:AEE27809.1	ProteinID:AEE27810.1
ProteinID:AEE27812.1	EMBL:AK316776	ProteinID:ANM60381.1	ProteinID:ANM60382.1	ProteinID:ANM60383.1	ProteinID:ANM60384.1
ProteinID:ANM60385.1	ProteinID:ANM60386.1	ProteinID:ANM60388.1	ArrayExpress:AT1G05230	EnsemblPlantsGene:AT1G05230	RefSeq:AT1G05230
TAIR:AT1G05230	RefSeq:AT1G05230-TAIR-G	EnsemblPlants:AT1G05230.5	EMBL:AY037177	EMBL:AY091690	Unigene:At.19179
UniProt:B9DFH8	ncoils:Coil	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008289	GO:GO:0009058	GO:GO:0009653	GO:GO:0009791	GO:GO:0009908
GO:GO:0009987	GO:GO:0010090	GO:GO:0016043	GO:GO:0030154	GO:GO:0043565	GO:GO:0048497
Symbol:HDG2	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913
RefSeq:NP_001184911.1	RefSeq:NP_001322673.1	RefSeq:NP_001322674.1	RefSeq:NP_001322675.1	RefSeq:NP_001322676.1	RefSeq:NP_001322677.1
RefSeq:NP_001322678.1	RefSeq:NP_001322680.1	RefSeq:NP_172015.1	RefSeq:NP_849596.1	PFAM:PF00046	PFAM:PF01852
ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF513	UniProt:Q94C37
SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	UniParc:UPI00000A0AF7
SEG:seg	:	:	:	:	:

Description

HDG2AT1G05230 protein [Source:UniProtKB/TrEMBL;Acc:B9DFH8]

Coordinates

chr1:-:1513388..1518845

Molecular Weight (calculated)

79428.1 Da

IEP (calculated)

5.735

GRAVY (calculated)

-0.394

Length

721 amino acids

Sequence
(BLAST)

001: MFEPNMLLAA MNNADSNNHN YNHEDNNNEG FLRDDEFDSP NTKSGSENQE GGSGNDQDPL HPNKKKRYHR HTQLQIQEME AFFKECPHPD DKQRKQLSRE
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.