Factsheet for AT4G21750.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98703	Canola	nucleus	85.3	93.53
Bra038757.1-P	Field mustard	nucleus	88.58	93.1
CDX94054	Canola	nucleus	84.91	93.09
CDX76399	Canola	nucleus	86.09	91.75
CDY27417	Canola	nucleus	85.96	91.74
CDX79091	Canola	nucleus	88.06	89.95
Bra020872.1-P	Field mustard	nucleus	88.19	89.84
AT4G04890.1	Thale cress	nucleus	87.53	89.77
CDY66622	Canola	nucleus	85.17	88.78
Bra013556.1-P	Field mustard	nucleus	78.87	87.1
KRH27601	Soybean	nucleus	75.98	79.1
KRH77881	Soybean	nucleus	75.2	78.39
GSMUA_Achr3P23090_001	Banana	endoplasmic reticulum, plasma membrane	67.72	78.18
Os04t0627000-02	Rice	cytosol, peroxisome	59.19	76.96
AT1G05230.5	Thale cress	nucleus	69.03	72.95
GSMUA_Achr8P07310_001	Banana	mitochondrion, nucleus	68.5	71.9
EES11464	Sorghum	nucleus	71.39	68.95
EES13460	Sorghum	mitochondrion, nucleus	69.82	68.12
Zm00001d049443_P005	Maize	nucleus	70.21	67.21
TraesCS2D01G473700.1	Wheat	nucleus	67.98	66.75
TraesCS2B01G497500.1	Wheat	nucleus	67.72	66.58
GSMUA_Achr10P...	Banana	nucleus	62.47	66.57
TraesCS2A01G474000.1	Wheat	nucleus	67.72	66.41
Zm00001d002234_P003	Maize	nucleus	68.64	65.87
Os08t0136100-01	Rice	nucleus	67.19	65.22
GSMUA_Achr11P...	Banana	plastid	67.19	64.89
Zm00001d000247_P001	Maize	plasma membrane	60.5	64.12
Zm00001d026351_P003	Maize	nucleus	70.87	63.98
TraesCS7B01G208600.1	Wheat	nucleus	65.62	62.66
TraesCS7A01G308400.1	Wheat	nucleus	65.35	62.56
TraesCS7D01G305200.1	Wheat	nucleus	65.09	62.31
Zm00001d024701_P001	Maize	nucleus	65.09	62.23
EES14500	Sorghum	nucleus	66.14	61.92
AT4G00730.1	Thale cress	nucleus	50.92	48.38
AT1G17920.1	Thale cress	nucleus	43.57	48.33
AT5G52170.2	Thale cress	nucleus	43.31	48.03
AT3G61150.1	Thale cress	nucleus	50.39	47.52
AT1G73360.1	Thale cress	nucleus	44.36	46.81
AT2G32370.1	Thale cress	nucleus	44.23	46.48
Os08t0187500-01	Rice	nucleus	18.5	43.25
AT3G03260.1	Thale cress	nucleus	36.09	39.34
AT4G17710.1	Thale cress	nucleus	36.48	39.21
AT1G79840.2	Thale cress	nucleus, plastid	39.63	38.92
AT5G46880.3	Thale cress	nucleus	41.47	38.26
AT4G25530.1	Thale cress	nucleus	32.94	36.59
AT5G17320.1	Thale cress	nucleus	32.81	34.82
AT1G34650.1	Thale cress	nucleus	31.1	33.47
AT5G07260.1	Thale cress	cytosol	20.34	28.65
AT4G26920.1	Thale cress	cytosol, plasma membrane, plastid	14.96	24.73

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	EntrezGene:828263	UniProt:A0A178UZ61	ProteinID:AEE84498.1	ProteinID:AEE84499.1
EMBL:AK229970	ProteinID:ANM67574.1	ProteinID:ANM67575.1	ArrayExpress:AT4G21750	EnsemblPlantsGene:AT4G21750	RefSeq:AT4G21750
TAIR:AT4G21750	RefSeq:AT4G21750-TAIR-G	EnsemblPlants:AT4G21750.3	Symbol:ATML1	EMBL:AY091104	EMBL:AY150491
Unigene:At.2706	ProteinID:CAB36819.1	ProteinID:CAB81282.1	ncoils:Coil	GO:GO:0000003	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058	GO:GO:0009790
GO:GO:0009791	GO:GO:0009845	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0048825
GO:GO:0090627	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913
RefSeq:NP_001031692.1	RefSeq:NP_001329394.1	RefSeq:NP_001329395.1	RefSeq:NP_193906.2	ProteinID:OAO98823.1	PFAM:PF00046
PFAM:PF01852	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF320
UniProt:Q8RWU4	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom
EMBL:U37589	UniParc:UPI00000AC4A9	SEG:seg	:	:	:

Description

ATML1ATML1 [Source:UniProtKB/TrEMBL;Acc:A0A178UZ61]

Coordinates

chr4:+:11555503..11560733

Molecular Weight (calculated)

83494.8 Da

IEP (calculated)

5.719

GRAVY (calculated)

-0.338

Length

762 amino acids

Sequence
(BLAST)

001: MYHPNMFESH HHMFDMTPKN SENDLGITGS HEEDFETKSG AEVTMENPLE EELQDPNQRP NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRELS
101: LEPLQVKFWF QNKRTQMKAQ HERHENQILK SENDKLRAEN NRYKDALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE EIDRISAIAA KYVGKPLMAN
201: SSSFPQLSSS HHIPSRSLDL EVGNFGNNNN SHTGFVGEMF GSSDILRSVS IPSEADKPMI VELAVAAMEE LVRMAQTGDP LWVSSDNSVE ILNEEEYFRT
301: FPRGIGPKPI GLRSEASRES TVVIMNHINL IEILMDVNQW SSVFCGIVSR ALTLEVLSTG VAGNYNGALQ VMTAEFQVPS PLVPTRENYF VRYCKQHSDG
401: IWAVVDVSLD SLRPSPITRS RRRPSGCLIQ ELQNGYSKVT WVEHIEVDDR SVHNMYKPLV NTGLAFGAKR WVATLDRQCE RLASSMASNI PACDLSVITS
501: PEGRKSMLKL AERMVMSFCT GVGASTAHAW TTLSTTGSDD VRVMTRKSMD DPGRPPGIVL SAATSFWIPV APKRVFDFLR DENSRSEWDI LSNGGLVQEM
601: AHIANGRDPG NSVSLLRVNS GNSGQSNMLI LQESCTDASG SYVIYAPVDI IAMNVVLSGG DPDYVALLPS GFAILPDGSA RGGGGSANAS AGAGVEGGGE
701: GNNLEVVTTT GSCGGSLLTV AFQILVDSVP TAKLSLGSVA TVNSLIKCTV ERIKAALACD GA

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.