Factsheet for Bra038757.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98703	Canola	nucleus	95.03	99.14
CDX94054	Canola	nucleus	94.62	98.7
AT4G21750.3	Thale cress	nucleus	93.1	88.58
Bra020872.1-P	Field mustard	nucleus	90.34	87.57
Bra029527.1-P	Field mustard	nucleus	85.93	83.62
Bra013556.1-P	Field mustard	nucleus	79.31	83.33
Bra000807.1-P	Field mustard	nucleus	66.62	80.9
KRH27601	Soybean	nucleus	74.48	73.77
GSMUA_Achr3P23090_001	Banana	endoplasmic reticulum, plasma membrane	67.03	73.64
Os04t0627000-02	Rice	cytosol, peroxisome	59.31	73.38
KRH77881	Soybean	nucleus	73.79	73.19
Bra032478.1-P	Field mustard	nucleus	68.14	68.71
Bra015401.1-P	Field mustard	nucleus	68.14	68.61
GSMUA_Achr8P07310_001	Banana	mitochondrion, nucleus	67.72	67.63
EES11464	Sorghum	nucleus	70.62	64.89
EES13460	Sorghum	mitochondrion, nucleus	69.79	64.79
Zm00001d049443_P005	Maize	nucleus	70.07	63.82
GSMUA_Achr10P...	Banana	nucleus	62.21	63.08
TraesCS2D01G473700.1	Wheat	nucleus	67.17	62.76
TraesCS2B01G497500.1	Wheat	nucleus	66.9	62.58
TraesCS2A01G474000.1	Wheat	nucleus	66.9	62.42
Bra000960.1-P	Field mustard	extracellular	10.07	62.39
Zm00001d002234_P003	Maize	nucleus	68.28	62.34
GSMUA_Achr11P...	Banana	plastid	67.03	61.6
Os08t0136100-01	Rice	nucleus	66.34	61.27
Zm00001d026351_P003	Maize	nucleus	70.62	60.66
Zm00001d000247_P001	Maize	plasma membrane	59.86	60.36
Zm00001d024701_P001	Maize	nucleus	64.0	58.22
TraesCS7B01G208600.1	Wheat	nucleus	64.0	58.15
TraesCS7A01G308400.1	Wheat	nucleus	63.72	58.04
EES14500	Sorghum	nucleus	65.1	57.99
TraesCS7D01G305200.1	Wheat	nucleus	63.45	57.79
Bra037355.1-P	Field mustard	nucleus	51.31	47.09
Bra003439.1-P	Field mustard	nucleus	50.34	46.5
Bra005588.1-P	Field mustard	nucleus	45.1	46.45
Bra004934.1-P	Field mustard	nucleus	50.07	46.18
Bra021779.1-P	Field mustard	nucleus	46.07	45.88
Bra016578.1-P	Field mustard	nucleus	43.17	45.76
Bra028295.1-P	Field mustard	nucleus	41.66	44.28
Bra003846.1-P	Field mustard	nucleus	43.03	44.26
Bra025938.1-P	Field mustard	nucleus	41.79	43.66
Bra015996.1-P	Field mustard	nucleus	42.9	43.38
Bra003535.1-P	Field mustard	nucleus	40.41	39.07
Os08t0187500-01	Rice	nucleus	16.83	37.42
Bra017519.1-P	Field mustard	nucleus	41.38	36.76
Bra021035.1-P	Field mustard	nucleus	36.69	36.24
Bra024984.1-P	Field mustard	nucleus	38.9	35.47
Bra023611.1-P	Field mustard	nucleus	33.38	34.33
Bra032003.1-P	Field mustard	nucleus	32.28	33.96
Bra020066.1-P	Field mustard	nucleus	31.72	33.72
Bra003213.1-P	Field mustard	nucleus	31.86	32.54
Bra008562.1-P	Field mustard	cytosol, nucleus, plastid	32.41	32.5
Bra021363.1-P	Field mustard	nucleus	32.41	32.32
Bra013898.1-P	Field mustard	nucleus	26.76	31.14
Bra007562.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	7.59	19.23

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	EnsemblPlantsGene:Bra038757	EnsemblPlants:Bra038757.1	EnsemblPlants:Bra038757.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	UniProt:M4FCD8	PFAM:PF00046	PFAM:PF01852
ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF320	SMART:SM00234
SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	UniParc:UPI0002540D0E	:

Description

AT4G21750 (E=7e-306) ATML1 | ATML1 (MERISTEM LAYER 1); DNA binding / sequence-specific DNA binding / transcription factor

Coordinates

chrA03:+:24245881..24249414

Molecular Weight (calculated)

80084.7 Da

IEP (calculated)

5.931

GRAVY (calculated)

-0.370

Length

725 amino acids

Sequence
(BLAST)

001: MYQPNMFESH HHMFDMTPKN SDNDLGLTGS REDDFETKSG AEVTMENPLE EELQDPNQRP NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRELN
101: LEPLQVKFWF HNKRTQMKAQ HERHENSILK SYNDKLRAEN NRIENARLSE EIDRISAIAT KYVGKPLLTH SSSSFPQLTS SHHIPSRSLD LEVGNFGNTN
201: NSQTGFLGDM YGTSDIMRSV SIHNDADKPM IVELAVAAME ELVRMAQTGD PLWVSSDSAV EILNEEEYFR TFPRGIGPKP LGLRSEASRE STVVIMNHIN
301: LVEILMDVNQ WSSVFCGIVS RALTLEVLST GVAGNYNGAL QVMTAEFQVP SPLVPTRENY FVRYCKQHSD NTWAVVDVSL DSLRPSPITR NRRRPSGCLI
401: QELQNGYSKV TWVEHTEVDD RSVHTMYKPL VNTGLAFGAK RWVATLDRQC ERLASSMASN IPTGDLSVIT SPEGRKSMLK LAERMVMSFC SGVGASNAHA
501: WTTLATTGSD DVRVMTRKSM DDPGRPPGIV LSAATSFWIP VAPKRVFDFL RDENSRSEWD ILSNGGLVQE MAHIANGRDP GNSVSLFRVN SANSGQSNML
601: ILQESCTDAS GSYVIYAPVD IMAMNVVLSG GDPDYVALLP SGFAILPDGS SRVNASAGAE GGDGNNLEVV TSTASNCGSL LTVAFQILVD SVPTAKLSLG
701: SVATVNSLIK CTVERIKAAL ACDGA

Best Arabidopsis Sequence Match ( AT4G21750.2 )
(BLAST)

001: MYHPNMFESH HHMFDMTPKN SENDLGITGS HEEDFETKSG AEVTMENPLE EELQDPNQRP NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRELS
101: LEPLQVKFWF QNKRTQMKAQ HERHENQILK SENDKLRAEN NRYKDALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE EIDRISAIAA KYVGKPLMAN
201: SSSFPQLSSS HHIPSRSLDL EVGNFGNNNN SHTGFVGEMF GSSDILRSVS IPSEADKPMI VELAVAAMEE LVRMAQTGDP LWVSSDNSVE ILNEEEYFRT
301: FPRGIGPKPI GLRSEASRES TVVIMNHINL IEILMDVNQW SSVFCGIVSR ALTLEVLSTG VAGNYNGALQ VMTAEFQVPS PLVPTRENYF VRYCKQHSDG
401: IWAVVDVSLD SLRPSPITRS RRRPSGCLIQ ELQNGYSKVT WVEHIEVDDR SVHNMYKPLV NTGLAFGAKR WVATLDRQCE RLASSMASNI PACDLSVITS
501: PEGRKSMLKL AERMVMSFCT GVGASTAHAW TTLSTTGSDD VRVMTRKSMD DPGRPPGIVL SAATSFWIPV APKRVFDFLR DENSRSEWDI LSNGGLVQEM
601: AHIANGRDPG NSVSLLRVNS GNSGQSNMLI LQESCTDASG SYVIYAPVDI IAMNVVLSGG DPDYVALLPS GFAILPDGSA RGGGGSANAS AGAGVEGGGE
701: GNNLEVVTTT GSCGGSLLTV AFQILVDSVP TAKLSLGSVA TVNSLIKCTV ERIKAALACD GA

Arabidopsis Description

ATML1ATML1 [Source:UniProtKB/TrEMBL;Acc:A0A178UZ61]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.