Factsheet for Bra024984.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33492	Canola	nucleus	98.87	98.74
Bra017519.1-P	Field mustard	nucleus	85.66	83.46
AT5G46880.3	Thale cress	nucleus	85.66	82.45
VIT_02s0012g02030.t01	Wine grape	nucleus	58.11	57.89
Bra021035.1-P	Field mustard	nucleus	52.96	57.36
KRH74360	Soybean	nucleus	54.84	55.26
KRH39579	Soybean	nucleus	55.09	54.75
PGSC0003DMT400006155	Potato	nucleus	51.95	54.06
Solyc08g076370.2.1	Tomato	nucleus	55.22	52.14
GSMUA_Achr5P14100_001	Banana	nucleus	49.43	51.98
GSMUA_Achr4P19010_001	Banana	nucleus	50.57	50.19
TraesCS1A01G193400.1	Wheat	nucleus, plastid	50.44	45.93
TraesCS1D01G197300.1	Wheat	nucleus	50.57	45.53
HORVU1Hr1G050620.2	Barley	nucleus	50.31	45.2
Os10t0575600-01	Rice	nucleus	50.06	45.12
TraesCS1B01G208400.1	Wheat	nucleus	50.44	45.06
KXG38837	Sorghum	nucleus	49.43	44.56
Zm00001d030069_P004	Maize	nucleus	49.06	44.12
Bra015401.1-P	Field mustard	nucleus	38.24	42.22
Bra003846.1-P	Field mustard	nucleus	36.98	41.7
Bra032478.1-P	Field mustard	nucleus	37.11	41.03
Bra015996.1-P	Field mustard	nucleus	36.98	41.0
Bra000807.1-P	Field mustard	nucleus	30.57	40.7
Bra016578.1-P	Field mustard	nucleus	34.97	40.64
Bra029527.1-P	Field mustard	nucleus	37.99	40.54
Bra025938.1-P	Field mustard	nucleus	34.59	39.63
Bra000960.1-P	Field mustard	extracellular	5.79	39.32
Bra020872.1-P	Field mustard	nucleus	36.86	39.17
Bra038757.1-P	Field mustard	nucleus	35.47	38.9
Bra013556.1-P	Field mustard	nucleus	32.58	37.54
Bra037355.1-P	Field mustard	nucleus	36.1	36.33
Bra004934.1-P	Field mustard	nucleus	34.97	35.37
Bra028295.1-P	Field mustard	nucleus	30.06	35.04
Bra005588.1-P	Field mustard	nucleus	30.94	34.94
Bra003439.1-P	Field mustard	nucleus	34.47	34.9
Bra021779.1-P	Field mustard	nucleus	30.57	33.38
Bra003535.1-P	Field mustard	nucleus	30.19	32.0
Bra023611.1-P	Field mustard	nucleus	27.42	30.92
Bra032003.1-P	Field mustard	nucleus	26.04	30.04
Bra003213.1-P	Field mustard	nucleus	26.79	30.0
Bra020066.1-P	Field mustard	nucleus	25.53	29.77
Bra008562.1-P	Field mustard	cytosol, nucleus, plastid	26.92	29.6
Bra021363.1-P	Field mustard	nucleus	24.03	26.27
Bra013898.1-P	Field mustard	nucleus	20.13	25.68
Bra007562.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	7.17	19.93

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	EnsemblPlantsGene:Bra024984	EnsemblPlants:Bra024984.1	EnsemblPlants:Bra024984.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	UniProt:M4E878	PFAM:PF00046	PFAM:PF01852
ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF267	SMART:SM00234
SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	UniParc:UPI000253FB07	SEG:seg

Description

AT5G46880 (E=9e-214) HB-7, HDG5 | HB-7 (HOMEOBOX-7); DNA binding / transcription factor

Coordinates

chrA06:-:24525275..24529263

Molecular Weight (calculated)

88355.1 Da

IEP (calculated)

5.327

GRAVY (calculated)

-0.379

Length

795 amino acids

Sequence
(BLAST)

001: MLTMGEENVM TTDNRFASPQ PPSSSPATIQ NPNFNFNPFN SFSSVIPEEH GMMSMSMLMM MGDGGVEEMM ENGSAGGSSG SGSEQAEDQK SGNEFDVAEL
101: QDEEQPPPAK KKRYHRHTNR QIEEMEALFK QNPHPDDKQR QRLSHELGLK PRQVKFWFQN RRTQMKAQQD RAENVMLRAD NDNLKAENSH LQAELRCLSC
201: PSCGGPTVLG DIPFNELHIE NCRLREELDR LSSIASRYTG RPMEPSQPMI NPPLEVQHHQ PSLELDMSVY AGNFQEQPCS DMMLLPPQDT ACYLQVQTNN
301: NSNGNNMVLA DEEKVIAMEI AVSCVQELTK MCNTEEPLWI KKKSDKMGGE VLCLNEEEYK RLFPWPMENH NNKGDFRREA SKANAVVIMN SITLVDAFLN
401: ADKWSEMFCS IVARAKTVQI ISSGVSGASG SLLLMYAELQ VLSPLVPTRE AYFLRYVEQN AENGNWAIVD FPIDQIQPLS ANTPHEYKRK PSGCIIQDMP
501: NGYSQVKWVE HVEVNERHVH EIFAEYVKSG IAFGASLIPS AEGRRNMMRL SQRMMKTFCV NISTSYGQSW TALSETTKDT VRITTRKVCE PGQPTGVVLA
601: AVSTIWLPFS HAKVFDLLRH QHHHSLLEVL FSGSSPHEVA HIANGSHPGN CISLLRINVS SNSWHNVELM LQESCIDNSG SLIVYSSVDV DSIKHAMNGE
701: DPSGMPLLPL GFSVVPVNYP DQVEGVSVNS IPLPSCLLTV GIQVLASNVP TAKPNLSTVT TINNHLCSIV NQITSVLSST IPPAGDDAVA KQEVI

Best Arabidopsis Sequence Match ( AT5G46880.3 )
(BLAST)

001: MLTMGEGNVM TSNNRFASPP QQPSSSSPGT IQNPNFNFIP FNSYSSIIPK EEHGMMSMMM MMGDGTVEEM MENGSAGGSF GSGSEQAEDP KFGNESDVNE
101: LHDDEQPPPA KKKRYHRHTN RQIQEMEALF KENPHPDDKQ RKRLSAELGL KPRQVKFWFQ NRRTQMKAQQ DRNENVMLRA ENDNLKSENC HLQAELRCLS
201: CPSCGGPTVL GDIPFNEIHI ENCRLREELD RLCCIASRYT GRPMQSMPPS QPLINPSPML PHHQPSLELD MSVYAGNFPE QSCTDMMMLP PQDTACFFPD
301: QTANNNNNNN MLLADEEKVI AMEFAVSCVQ ELTKMCDTEE PLWIKKKSDK IGGEILCLNE EEYMRLFPWP MENQNNKGDF LREASKANAV VIMNSITLVD
401: AFLNADKWSE MFCSIVARAK TVQIISSGVS GASGSLLLMF AELQVLSPLV PTREAYFLRY VEQNAETGNW AIVDFPIDSF HDQMQPMNTI THEYKRKPSG
501: CIIQDMPNGY SQVKWVEHVE VDEKHVHETF AEYVKSGMAF GANRWLDVLQ RQCERIASLM ARNITDLGVI SSAEARRNIM RLSQRLVKTF CVNISTAYGQ
601: SWTALSETTK DTVRITTRKM CEPGQPTGVV LCAVSTTWLP FSHHQVFDLI RDQHHQSLLE VLFNGNSPHE VAHIANGSHP GNCISLLRIN VASNSWHNVE
701: LMLQESCIDN SGSLIVYSTV DVDSIQQAMN GEDSSNIPIL PLGFSIVPVN PPEGISVNSH SPPSCLLTVG IQVLASNVPT AKPNLSTVTT INNHLCATVN
801: QITSALSNTI TPVIASSADV SNQEVS

Arabidopsis Description

HDG5Homeobox-leucine zipper protein HDG5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJS2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.