Factsheet for Bra032478.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06167	Canola	nucleus	99.72	99.58
Bra015401.1-P	Field mustard	nucleus	95.69	95.56
AT1G05230.5	Thale cress	nucleus	95.13	94.87
KRH56105	Soybean	nucleus	80.67	79.56
KRH25398	Soybean	plastid	80.39	75.95
VIT_12s0059g02310.t01	Wine grape	nucleus	79.69	75.69
GSMUA_Achr3P23090_001	Banana	endoplasmic reticulum, plasma membrane	68.71	74.85
KRH22554	Soybean	nucleus	80.67	74.26
KRH26803	Soybean	nucleus	80.11	73.75
Os04t0627000-02	Rice	cytosol, peroxisome	58.28	71.5
Bra000807.1-P	Field mustard	nucleus	58.41	70.35
Bra029527.1-P	Field mustard	nucleus	72.6	70.07
GSMUA_Achr8P07310_001	Banana	mitochondrion, nucleus	70.1	69.42
Bra038757.1-P	Field mustard	nucleus	68.71	68.14
GSMUA_Achr10P...	Banana	nucleus	66.62	66.99
Bra020872.1-P	Field mustard	nucleus	69.54	66.84
EES11464	Sorghum	nucleus	72.46	66.03
Bra013556.1-P	Field mustard	nucleus	62.45	65.07
GSMUA_Achr11P...	Banana	plastid	70.93	64.64
TraesCS2B01G497500.1	Wheat	nucleus	69.54	64.52
TraesCS2D01G473700.1	Wheat	nucleus	69.54	64.43
TraesCS2A01G474000.1	Wheat	nucleus	69.54	64.35
Os08t0136100-01	Rice	nucleus	69.96	64.08
EES13460	Sorghum	mitochondrion, nucleus	69.54	64.02
Zm00001d002234_P003	Maize	nucleus	69.96	63.35
Zm00001d049443_P005	Maize	nucleus	70.1	63.32
Bra000960.1-P	Field mustard	extracellular	10.01	61.54
TraesCS7B01G208600.1	Wheat	nucleus	68.15	61.4
TraesCS7A01G308400.1	Wheat	nucleus	67.87	61.31
TraesCS7D01G305200.1	Wheat	nucleus	67.73	61.18
Zm00001d026351_P003	Maize	nucleus	71.63	61.02
Zm00001d000247_P001	Maize	plasma membrane	59.94	59.94
Zm00001d024701_P001	Maize	nucleus	66.06	59.6
EES14500	Sorghum	nucleus	67.45	59.58
Bra005588.1-P	Field mustard	nucleus	52.16	53.27
Bra021779.1-P	Field mustard	nucleus	50.63	50.0
Bra037355.1-P	Field mustard	nucleus	51.18	46.58
Bra003439.1-P	Field mustard	nucleus	50.49	46.24
Bra016578.1-P	Field mustard	nucleus	43.67	45.91
Bra004934.1-P	Field mustard	nucleus	50.07	45.8
Bra003846.1-P	Field mustard	nucleus	44.78	45.67
Bra015996.1-P	Field mustard	nucleus	45.2	45.33
Bra025938.1-P	Field mustard	nucleus	42.56	44.09
Bra028295.1-P	Field mustard	nucleus	41.03	43.26
Os08t0187500-01	Rice	nucleus	19.47	42.94
Bra003535.1-P	Field mustard	nucleus	40.47	38.8
Bra021035.1-P	Field mustard	nucleus	38.94	38.15
Bra017519.1-P	Field mustard	nucleus	42.7	37.62
Bra024984.1-P	Field mustard	nucleus	41.03	37.11
Bra023611.1-P	Field mustard	nucleus	34.35	35.04
Bra020066.1-P	Field mustard	nucleus	31.99	33.72
Bra032003.1-P	Field mustard	nucleus	32.27	33.67
Bra003213.1-P	Field mustard	nucleus	32.55	32.96
Bra008562.1-P	Field mustard	cytosol, nucleus, plastid	32.55	32.37
Bra021363.1-P	Field mustard	nucleus	32.13	31.77
Bra013898.1-P	Field mustard	nucleus	26.98	31.14
Bra007562.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	9.18	23.08

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	Gene3D:3.30.530.20	EnsemblPlantsGene:Bra032478	EnsemblPlants:Bra032478.1	EnsemblPlants:Bra032478.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393	UniProt:M4EUJ6	PFAM:PF00046
PFAM:PF01852	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF513
SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom
UniParc:UPI00025435A3	SEG:seg	:	:	:	:

Description

AT1G05230 (E=0.0) HDG2 | HDG2 (HOMEODOMAIN GLABROUS 2); DNA binding / transcription factor

Coordinates

chrA09:+:36240867..36244764

Molecular Weight (calculated)

79348.1 Da

IEP (calculated)

5.523

GRAVY (calculated)

-0.365

Length

719 amino acids

Sequence
(BLAST)

001: MFEPNMLLAA MNNEDSNNHN YNHEVNNNNN EGFLRDDEFD SANTKSGSEN QEGGSGNDQD PLHPNKKKRY HRHTQLQIQE MEAFFKECPH PDDKQRKQLS
101: RELGLEPLQV KFWFQNKRTQ MKNHHERHEN SHLRAENEKL RGDNLRYREA LANASCPNCG GPTAIGEMSF DEHQLRLENA RLREEIDRIS AIAAKYVGKP
201: VSNYPLMSPP PLPPRPLELA MGNFGDVYGN NPTDQFKCIT APTESDKPVI IDLAVAAMEE LIRMVQVDEP LWNSLVFDEE EYARTFPRGI GPKPAGFRSE
301: ASRESVVVIM NHINIVEILM DVNQWSMVFA GMVSRAMTLA VLSTGVAGNY NGALQVMTAE FQVPTPLVPT RETYFARYCK QQADGSWAVV DISLDSLQPN
401: PPVRCRRRAS GCLIQEMPNG YSKLTWVEHV EVDDRGVHDL YKHMVSTGHA FGAKRWVAIL DRQCERLASV MATNISSGEV GVITNQEGRR SMLKLAERMV
501: ISFCAGVSAS TAHTWTTLSG TGAEDVRVMT RKSVDDPGRP PGIVLSAATS FGIPVPPKRV FDFLRDENSR NEWDILSNGG VVQEMAHIAN GRETGNCVSL
601: LRVNSANSSQ SNMLILQESC TDPTASFVIY APVDIVAMNI VLNGGDPDYV ALLPSGFAIL PDGNANGGGE GGSLLTVAFQ ILVDSVPTAK LSLGSVATVN
701: NLIACTVERI KASMSCETA

Best Arabidopsis Sequence Match ( AT1G05230.8 )
(BLAST)

001: MFEPNMLLAA MNNADSNNHN YNHEDNNNEG FLRDDEFDSP NTKSGSENQE GGSGNDQDPL HPNKKKRYHR HTQLQIQEME AFFKECPHPD DKQRKQLSRE
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A

Arabidopsis Description

HDG2AT1G05230 protein [Source:UniProtKB/TrEMBL;Acc:B9DFH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.