Factsheet for Bra021779.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19129	Canola	nucleus	98.9	99.04
Bra005588.1-P	Field mustard	nucleus	64.01	66.19
AT2G32370.1	Thale cress	nucleus	55.22	55.45
Bra015401.1-P	Field mustard	nucleus	50.41	50.97
Bra032478.1-P	Field mustard	nucleus	50.0	50.63
Bra000807.1-P	Field mustard	nucleus	39.7	48.41
Bra029527.1-P	Field mustard	nucleus	48.63	47.52
Bra038757.1-P	Field mustard	nucleus	45.88	46.07
Bra020872.1-P	Field mustard	nucleus	46.84	45.59
PGSC0003DMT400094124	Potato	nucleus	45.88	44.18
PGSC0003DMT400048971	Potato	nucleus	33.65	43.13
Bra013556.1-P	Field mustard	nucleus	40.8	43.04
Solyc12g005830.1.1	Tomato	nucleus	43.68	42.34
Bra000960.1-P	Field mustard	extracellular	6.32	39.32
Bra016578.1-P	Field mustard	nucleus	35.58	37.87
Bra028295.1-P	Field mustard	nucleus	35.3	37.68
Bra004934.1-P	Field mustard	nucleus	40.52	37.53
Bra037355.1-P	Field mustard	nucleus	40.66	37.47
Bra003439.1-P	Field mustard	nucleus	40.38	37.45
Solyc07g041850.1.1	Tomato	nucleus	34.89	37.35
Bra015996.1-P	Field mustard	nucleus	36.68	37.24
Bra003846.1-P	Field mustard	nucleus	35.71	36.88
Bra025938.1-P	Field mustard	nucleus	34.89	36.6
Bra003535.1-P	Field mustard	nucleus	36.68	35.6
PGSC0003DMT400033830	Potato	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	16.21	33.52
Bra017519.1-P	Field mustard	nucleus	35.16	31.37
Bra021035.1-P	Field mustard	nucleus	31.04	30.79
Bra024984.1-P	Field mustard	nucleus	33.38	30.57
Bra023611.1-P	Field mustard	nucleus	29.26	30.21
Bra032003.1-P	Field mustard	nucleus	27.88	29.46
Bra020066.1-P	Field mustard	nucleus	27.34	29.18
Bra008562.1-P	Field mustard	cytosol, nucleus, plastid	28.57	28.77
Bra003213.1-P	Field mustard	nucleus	28.02	28.73
Bra021363.1-P	Field mustard	nucleus	28.02	28.06
Bra013898.1-P	Field mustard	nucleus	23.49	27.45
Bra007562.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	7.55	19.23

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	EnsemblPlantsGene:Bra021779	EnsemblPlants:Bra021779.1	EnsemblPlants:Bra021779.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	UniProt:M4DZ32	PFAM:PF00046	PFAM:PF01852
ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF513	SMART:SM00234
SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	UniParc:UPI0002544F18	SEG:seg

Description

AT1G05230 (E=2e-208) HDG2 | HDG2 (HOMEODOMAIN GLABROUS 2); DNA binding / transcription factor

Coordinates

chrA04:+:14419124..14423080

Molecular Weight (calculated)

81100.6 Da

IEP (calculated)

6.593

GRAVY (calculated)

-0.430

Length

728 amino acids

Sequence
(BLAST)

001: MSQPNMVPVE MNNNVGDGNN NNNNNNGNNI TTTNNDMNGG IVLGDEEIDS ANTSENQEDG SDHQDPARPS KRKRYHRHTK HQIQELENFF KECPHPDDTQ
101: RKELSRQLGL DHHQIKFWFQ NKRTQIKNHQ ERHENSQLRA ENDRLRAENH QCRASIAKAI CHRCGGKTAI GEMSFEEHHL LLENTKLAEE IRQLSLVMPK
201: CTGKPVMNYT LTPPVPARPL EEIASNRREV YGSIGNVPGS ALRVKDGDKP LIIELAELAM KELMAMARLD EPLWDIGANG TSLALNLNEY TRIFRNGLGP
301: ILNGLRTEAS KATSIAFMNH LDIVQSLMDV NLWSNMFARM VARAMSHDAL LTGVQGNFDG AFHLMTAEYQ VLSPVVSTRE CYFVRHCKQQ GDGIWAVVDV
401: SIDHLFPNLE LKCRRRPSGC LIQQIENGFC KVTWVEHVEV DDREVHPLYK SLISSGQALS AERWVETLER QCERLAYIMS PNVPSIEPDG LIMITNNAKQ
501: SLLKIAERMT RSFLSGVATS NGDIWFGLSG NGGNTVRAMT RKSLNDPGRP VGVILYASTS FWLPVPPKTV FDFLRDANNR TNWDVITTGG EGLQLMSQIG
601: NGRDSRNCVS LLRTPNTSQK KMMMIQETST DPTASFVIYA PLDVTLTENV LMGGDPGNVS LLPMGFAILP DGTAQPGREG GSLVSTAFQV LAEKDPSTML
701: SFSSLATTEN LILTTANKIR AYFSQQTV

Best Arabidopsis Sequence Match ( AT1G05230.10 )
(BLAST)

001: MFEPNMLLAA MNNADSNNHN YNHEDNNNEG FLRDDEFDSP NTKSGSENQE GGSGNDQDPL HPNKKKRYHR HTQLQIQEME AFFKECPHPD DKQRKQLSRE
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A

Arabidopsis Description

HDG2AT1G05230 protein [Source:UniProtKB/TrEMBL;Acc:B9DFH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.