Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY12213 | Canola | nucleus | 54.62 | 55.62 |
| Bra021779.1-P | Field mustard | nucleus | 55.45 | 55.22 |
| CDY19129 | Canola | nucleus | 55.31 | 55.16 |
| CDY15339 | Canola | nucleus | 55.59 | 55.13 |
| CDY48272 | Canola | nucleus | 53.24 | 54.83 |
| Bra005588.1-P | Field mustard | nucleus | 53.1 | 54.69 |
| CDY30748 | Canola | endoplasmic reticulum | 41.79 | 51.62 |
| AT1G05230.5 | Thale cress | nucleus | 51.31 | 51.59 |
| AT4G04890.1 | Thale cress | nucleus | 47.59 | 46.43 |
| AT4G21750.3 | Thale cress | nucleus | 46.48 | 44.23 |
| PGSC0003DMT400094124 | Potato | nucleus | 44.55 | 42.72 |
| PGSC0003DMT400048971 | Potato | nucleus | 32.41 | 41.37 |
| Solyc12g005830.1.1 | Tomato | nucleus | 42.76 | 41.28 |
| AT1G17920.1 | Thale cress | nucleus | 36.14 | 38.14 |
| AT1G73360.1 | Thale cress | nucleus | 37.52 | 37.67 |
| AT5G52170.2 | Thale cress | nucleus | 35.45 | 37.41 |
| AT4G00730.1 | Thale cress | nucleus | 40.97 | 37.03 |
| AT3G61150.1 | Thale cress | nucleus | 40.55 | 36.39 |
| Solyc07g041850.1.1 | Tomato | nucleus | 33.66 | 35.88 |
| AT4G17710.1 | Thale cress | nucleus | 31.31 | 32.02 |
| AT1G79840.2 | Thale cress | nucleus, plastid | 33.66 | 31.44 |
| PGSC0003DMT400033830 | Potato | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 15.17 | 31.25 |
| AT3G03260.1 | Thale cress | nucleus | 30.07 | 31.19 |
| AT5G46880.3 | Thale cress | nucleus | 35.17 | 30.87 |
| AT4G25530.1 | Thale cress | nucleus | 29.1 | 30.76 |
| AT5G17320.1 | Thale cress | nucleus | 29.93 | 30.22 |
| AT1G34650.1 | Thale cress | nucleus | 28.55 | 29.24 |
| AT5G07260.1 | Thale cress | cytosol | 19.17 | 25.69 |
| AT4G26920.1 | Thale cress | cytosol, plasma membrane, plastid | 13.38 | 21.04 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | EntrezGene:817798 | ProteinID:AAC69941.1 | ProteinID:AEC08674.1 | ArrayExpress:AT2G32370 |
| EnsemblPlantsGene:AT2G32370 | RefSeq:AT2G32370 | TAIR:AT2G32370 | RefSeq:AT2G32370-TAIR-G | EnsemblPlants:AT2G32370.1 | TAIR:AT2G32370.1 |
| Unigene:At.38083 | ncoils:Coil | EMBL:EF988635 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 | GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009987 |
| GO:GO:0043565 | GO:GO:0048825 | Symbol:HDG3 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom |
| InterPro:IPR001356 | InterPro:IPR002913 | RefSeq:NP_180796.2 | PFAM:PF00046 | PFAM:PF01852 | PO:PO:0007131 |
| PO:PO:0009001 | ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS50848 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF320 |
| UniProt:Q9ZV65 | SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 | SUPFAM:SSF55961 | InterPro:START_lipid-bd_dom |
| UniParc:UPI000158AABB | SEG:seg | : | : | : | : |
Description
HDG3Homeobox-leucine zipper protein HDG3 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZV65]
Coordinates
chr2:+:13740878..13746286
Molecular Weight (calculated)
80074.9 Da
IEP (calculated)
6.510
GRAVY (calculated)
-0.446
Length
725 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQSNMVPVA NNGDNNNDNE NNNNNNNNGG TDNTNAGNDS GDQDFDSGNT SSGNHGEGLG NNQAPRHKKK KYNRHTQLQI SEMEAFFREC PHPDDKQRYD
101: LSAQLGLDPV QIKFWFQNKR TQNKNQQERF ENSELRNLNN HLRSENQRLR EAIHQALCPK CGGQTAIGEM TFEEHHLRIL NARLTEEIKQ LSVTAEKISR
201: LTGIPVRSHP RVSPPNPPPN FEFGMGSKGN VGNHSRETTG PADANTKPII MELAFGAMEE LLVMAQVAEP LWMGGFNGTS LALNLDEYEK TFRTGLGPRL
301: GGFRTEASRE TALVAMCPTG IVEMLMQENL WSTMFAGIVG RARTHEQIMA DAAGNFNGNL QIMSAEYQVL SPLVTTRESY FVRYCKQQGE GLWAVVDISI
401: DHLLPNINLK CRRRPSGCLI QEMHSGYSKV TWVEHVEVDD AGSYSIFEKL ICTGQAFAAN RWVGTLVRQC ERISSILSTD FQSVDSGDHI TLTNHGKMSM
501: LKIAERIART FFAGMTNATG STIFSGVEGE DIRVMTMKSV NDPGKPPGVI ICAATSFWLP APPNTVFDFL REATHRHNWD VLCNGEMMHK IAEITNGIDK
601: RNCASLLRHG HTSKSKMMIV QETSTDPTAS FVLYAPVDMT SMDITLHGGG DPDFVVILPS GFAIFPDGTG KPGGKEGGSL LTISFQMLVE SGPEARLSVS
701: SVATTENLIR TTVRRIKDLF PCQTA
101: LSAQLGLDPV QIKFWFQNKR TQNKNQQERF ENSELRNLNN HLRSENQRLR EAIHQALCPK CGGQTAIGEM TFEEHHLRIL NARLTEEIKQ LSVTAEKISR
201: LTGIPVRSHP RVSPPNPPPN FEFGMGSKGN VGNHSRETTG PADANTKPII MELAFGAMEE LLVMAQVAEP LWMGGFNGTS LALNLDEYEK TFRTGLGPRL
301: GGFRTEASRE TALVAMCPTG IVEMLMQENL WSTMFAGIVG RARTHEQIMA DAAGNFNGNL QIMSAEYQVL SPLVTTRESY FVRYCKQQGE GLWAVVDISI
401: DHLLPNINLK CRRRPSGCLI QEMHSGYSKV TWVEHVEVDD AGSYSIFEKL ICTGQAFAAN RWVGTLVRQC ERISSILSTD FQSVDSGDHI TLTNHGKMSM
501: LKIAERIART FFAGMTNATG STIFSGVEGE DIRVMTMKSV NDPGKPPGVI ICAATSFWLP APPNTVFDFL REATHRHNWD VLCNGEMMHK IAEITNGIDK
601: RNCASLLRHG HTSKSKMMIV QETSTDPTAS FVLYAPVDMT SMDITLHGGG DPDFVVILPS GFAIFPDGTG KPGGKEGGSL LTISFQMLVE SGPEARLSVS
701: SVATTENLIR TTVRRIKDLF PCQTA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.