Factsheet for AT5G07260.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G26920.1	Thale cress	cytosol, plasma membrane, plastid	33.09	38.83
PGSC0003DMT400028197	Potato	cytosol	13.31	21.62
AT1G17920.1	Thale cress	nucleus	27.36	21.54
PGSC0003DMT400062470	Potato	cytosol, nucleus, plastid	12.01	21.38
AT4G04890.1	Thale cress	nucleus	29.02	21.13
AT1G73360.1	Thale cress	nucleus	27.73	20.78
AT1G05230.5	Thale cress	nucleus	27.54	20.67
PGSC0003DMT400076898	Potato	cytosol	18.85	20.61
AT4G21750.3	Thale cress	nucleus	28.65	20.34
AT4G00730.1	Thale cress	nucleus	29.57	19.95
AT3G61150.1	Thale cress	nucleus	29.57	19.8
AT5G52170.2	Thale cress	nucleus	24.58	19.36
Solyc06g035940.2.1	Tomato	nucleus	24.03	19.23
AT2G32370.1	Thale cress	nucleus	25.69	19.17
Solyc06g050160.2.1	Tomato	nucleus	22.74	18.84
PGSC0003DMT400062468	Potato	cytosol	12.38	18.77
PGSC0003DMT400037055	Potato	nucleus	27.54	18.35
Solyc03g026070.2.1	Tomato	nucleus	27.17	18.22
AT4G25530.1	Thale cress	nucleus	22.92	18.08
AT5G46880.3	Thale cress	nucleus	27.54	18.04
AT4G17710.1	Thale cress	nucleus	23.29	17.77
PGSC0003DMT400086035	Potato	nucleus	21.44	17.66
PGSC0003DMT400042908	Potato	nucleus	15.71	17.07
AT1G34650.1	Thale cress	nucleus	21.81	16.67
PGSC0003DMT400076902	Potato	nucleus	20.33	16.42
AT1G79840.2	Thale cress	nucleus, plastid	23.48	16.37
PGSC0003DMT400080861	Potato	nucleus	13.86	16.34
AT3G03260.1	Thale cress	nucleus	20.89	16.17
AT5G17320.1	Thale cress	nucleus	21.07	15.88
PGSC0003DMT400028195	Potato	nucleus	11.09	15.75
PGSC0003DMT400092271	Potato	nucleus	7.39	15.09
VIT_13s0067g01580.t01	Wine grape	nucleus	0.55	2.68

Protein Annotations

MapMan:15.5.3.3	EntrezGene:830617	ProteinID:AED91129.1	ArrayExpress:AT5G07260	EnsemblPlantsGene:AT5G07260	RefSeq:AT5G07260
TAIR:AT5G07260	RefSeq:AT5G07260-TAIR-G	EnsemblPlants:AT5G07260.1	TAIR:AT5G07260.1	Unigene:At.23335	EMBL:BT003974
EMBL:BT005131	GO:GO:0003674	GO:GO:0005488	GO:GO:0008150	GO:GO:0008289	InterPro:IPR002913
RefSeq:NP_196343.2	PFAM:PF01852	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF348	UniProt:Q84JD1
SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	UniParc:UPI000000C212	:	:	:

Description

START (StAR-related lipid-transfer) lipid-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q84JD1]

Coordinates

chr5:+:2277814..2280281

Molecular Weight (calculated)

61692.0 Da

IEP (calculated)

7.201

GRAVY (calculated)

-0.168

Length

541 amino acids

Sequence
(BLAST)

001: MYHHLQTRIF LHQQNDLLRA ENRARIHAMT SPSICRSCEE PIISTEEREL WLENARLRSE IDTLTCFIWR LNSFRNLYPA FATSLTEVGY GVAVMTSLSL
101: KEVVFLARQR TPMWTSNGRL NLDEYYSKLF PWYARNAPGF VHEVSRASAF VPCDASSLVA NLMNHVSWQK IFPSIIADVS VESQQRGLQK INVNFMPQIS
201: PLIQTRNVKL LRRSRHIEDD TWAIAEISMY FSSYAQHLRP EYMRFPSGYL IQHIANGISK VTILDHWVYK EEEGMNTFNS NSEFGAQRWL TALQKHYYNT
301: CPVSIPSIGH NIQIFDQICR KNLLNLSSFM VNVFCSGVCG ITGQRWNRLN TVGVSANNIR MFTQESRGMS GIPCVLVSAT GLARMHTKPE VMFGLINGAE
401: KQEIWSYLES AKDMKELIRI GRHPNSWNEV SVFSIEWKGS KEWYLIQETY YDESGAMIIH TCVEAPYFAA AINGGDLSGV ELLPSGFTII PCESQECFVT
501: ASCYVKADQT MVTSPNELGS YMENMVTNIL GNVQNALPVH R

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.