Factsheet for PGSC0003DMT400080861

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400092271	Potato	nucleus	53.81	93.21
PGSC0003DMT400042908	Potato	nucleus	91.29	84.14
PGSC0003DMT400028197	Potato	cytosol	58.61	80.78
PGSC0003DMT400028195	Potato	nucleus	64.49	77.69
PGSC0003DMT400062468	Potato	cytosol	48.8	62.75
PGSC0003DMT400062470	Potato	cytosol, nucleus, plastid	36.17	54.61
Solyc06g050160.2.1	Tomato	nucleus	66.88	47.01
PGSC0003DMT400095083	Potato	cytosol	12.2	46.28
PGSC0003DMT400095329	Potato	cytosol	27.23	45.29
PGSC0003DMT400086035	Potato	nucleus	50.54	35.31
PGSC0003DMT400076902	Potato	nucleus	47.93	32.84
PGSC0003DMT400076898	Potato	cytosol	32.9	30.51
CDY39874	Canola	plasma membrane	11.11	26.56
PGSC0003DMT400037055	Potato	nucleus	45.1	25.49
KRH35356	Soybean	nucleus	42.05	25.23
PGSC0003DMT400071377	Potato	nucleus	44.66	24.97
Bra028295.1-P	Field mustard	nucleus	36.82	24.78
KRG91457	Soybean	nucleus	41.83	24.71
PGSC0003DMT400019986	Potato	nucleus	43.36	24.6
CDY31916	Canola	nucleus	35.95	24.52
KRH09109	Soybean	plastid	41.18	24.39
CDY00515	Canola	nucleus	35.73	24.37
KRH38560	Soybean	nucleus	40.3	23.84
PGSC0003DMT400029291	Potato	nucleus	35.29	23.24
PGSC0003DMT400005277	Potato	nucleus	37.04	23.19
PGSC0003DMT400061859	Potato	nucleus	34.42	22.93
PGSC0003DMT400069312	Potato	nucleus	35.08	22.52
VIT_13s0067g01580.t01	Wine grape	nucleus	5.45	22.32
PGSC0003DMT400094124	Potato	nucleus	33.77	20.5
PGSC0003DMT400033830	Potato	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	15.03	19.6
PGSC0003DMT400006770	Potato	nucleus	32.68	19.43
PGSC0003DMT400048971	Potato	nucleus	23.75	19.19
PGSC0003DMT400006155	Potato	nucleus	30.72	18.46
CDX94443	Canola	cytosol	24.18	17.68
Bra013898.1-P	Field mustard	nucleus	23.53	17.34
CDX89416	Canola	nucleus	23.75	16.8
PGSC0003DMT400034503	Potato	cytosol, nucleus	23.75	16.01
CDX89415	Canola	cytosol, mitochondrion	6.1	15.73
PGSC0003DMT400085057	Potato	cytosol	15.9	15.27
PGSC0003DMT400051268	Potato	cytosol	16.12	14.83
AT5G07260.1	Thale cress	cytosol	16.34	13.86
PGSC0003DMT400037397	Potato	cytosol	14.81	13.85
AT4G26920.1	Thale cress	cytosol, plasma membrane, plastid	13.51	13.45
PGSC0003DMT400036411	Potato	nucleus	14.6	12.76
PGSC0003DMT400038820	Potato	extracellular	9.37	11.81
PGSC0003DMT400051266	Potato	cytosol	8.06	9.51

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913
UniProt:M1D427	PFAM:PF00046	PFAM:PF01852	EnsemblPlantsGene:PGSC0003DMG400031490	PGSC:PGSC0003DMG400031490	EnsemblPlants:PGSC0003DMT400080861
ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF320	SMART:SM00234
SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	UniParc:UPI000294E19E	SEG:seg

Description

Homeobox protein [Source:PGSC_GENE;Acc:PGSC0003DMG400031490]

Coordinates

chr6:-:32233584..32237124

Molecular Weight (calculated)

51305.0 Da

IEP (calculated)

4.599

GRAVY (calculated)

-0.308

Length

459 amino acids

Sequence
(BLAST)

001: MEGHSDMNER KESLINVVIG GSGEEEIERS SIGDNITGGA SVDERGESSS KRKKPIRHNA DQIQELELFF KKNSLPNKKV RLELATKLSM DINQVQNWFQ
101: NKRTQVKLQL ELYENKTLKQ ENDKLRIENI VMKEALKNSI RDNFKENIDE NQIKIEHDQL EDEVKWLTAQ AYKSSLFNKD VVQDKMVLLN LAMDALNELF
201: RLYENDKPLW VSSLDGGGET LNIKEYARLF TLLIGTKPEH FTTEATTASG TVADTSLALV NTLMDKREWV EMFPCIVGKI YTTDVISTGI GGNKSGSLLL
301: IKTELQIISD LVYVREVQFL HFCKKHAEGV WAIVDVSVDT IQEGDDSGAN RVVLQDTCMD ATGSLLVYAT IDSQEINTVM KGGDSSCVTL FSNGITIVLD
401: CFQDFFTTNN YNVISGEMNN GFGGGSLMTT NFQIVGNIFP ATTLSMELVK EANALTNNS

Best Arabidopsis Sequence Match ( AT4G00730.1 )
(BLAST)

001: MNFGSLFDNT PGGGSTGARL LSGLSYGNHT AATNVLPGGA MAQAAAAASL FSPPLTKSVY ASSGLSLALE QPERGTNRGE ASMRNNNNVG GGGDTFDGSV
101: NRRSREEEHE SRSGSDNVEG ISGEDQDAAD KPPRKKRYHR HTPQQIQELE SMFKECPHPD EKQRLELSKR LCLETRQVKF WFQNRRTQMK TQLERHENAL
201: LRQENDKLRA ENMSIREAMR NPICTNCGGP AMLGDVSLEE HHLRIENARL KDELDRVCNL TGKFLGHHHN HHYNSSLELA VGTNNNGGHF AFPPDFGGGG
301: GCLPPQQQQS TVINGIDQKS VLLELALTAM DELVKLAQSE EPLWVKSLDG ERDELNQDEY MRTFSSTKPT GLATEASRTS GMVIINSLAL VETLMDSNRW
401: TEMFPCNVAR ATTTDVISGG MAGTINGALQ LMNAELQVLS PLVPVRNVNF LRFCKQHAEG VWAVVDVSID PVRENSGGAP VIRRLPSGCV VQDVSNGYSK
501: VTWVEHAEYD ENQIHQLYRP LLRSGLGFGS QRWLATLQRQ CECLAILISS SVTSHDNTSI TPGGRKSMLK LAQRMTFNFC SGISAPSVHN WSKLTVGNVD
601: PDVRVMTRKS VDDPGEPPGI VLSAATSVWL PAAPQRLYDF LRNERMRCEW DILSNGGPMQ EMAHITKGQD QGVSLLRSNA MNANQSSMLI LQETCIDASG
701: ALVVYAPVDI PAMHVVMNGG DSSYVALLPS GFAVLPDGGI DGGGSGDGDQ RPVGGGSLLT VAFQILVNNL PTAKLTVESV ETVNNLISCT VQKIRAALQC
801: ES

Arabidopsis Description

ANL2Homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WV12]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.