Factsheet for PGSC0003DMT400061859

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g031760.2.1	Tomato	cytosol	86.36	94.59
VIT_10s0116g00680.t01	Wine grape	nucleus	86.5	82.09
PGSC0003DMT400029291	Potato	nucleus	82.44	81.49
GSMUA_Achr3P23090_001	Banana	endoplasmic reticulum, plasma membrane	75.47	78.79
Os04t0627000-02	Rice	cytosol, peroxisome	65.46	76.96
PGSC0003DMT400005277	Potato	nucleus	81.57	76.67
GSMUA_Achr8P07310_001	Banana	mitochondrion, nucleus	74.6	70.8
EES11464	Sorghum	nucleus	78.52	68.57
GSMUA_Achr10P...	Banana	nucleus	69.52	66.99
EES13460	Sorghum	mitochondrion, nucleus	75.91	66.97
GSMUA_Achr11P...	Banana	plastid	76.49	66.79
Zm00001d049443_P005	Maize	nucleus	76.2	65.95
Zm00001d002234_P003	Maize	nucleus	75.47	65.49
TraesCS2B01G497500.1	Wheat	nucleus	73.44	65.29
TraesCS2D01G473700.1	Wheat	nucleus	73.44	65.21
TraesCS2A01G474000.1	Wheat	nucleus	73.44	65.12
Os08t0136100-01	Rice	nucleus	73.73	64.71
Zm00001d026351_P003	Maize	nucleus	76.92	62.8
Zm00001d000247_P001	Maize	plasma membrane	64.88	62.17
TraesCS7D01G305200.1	Wheat	nucleus	71.26	61.68
TraesCS7A01G308400.1	Wheat	nucleus	71.26	61.68
TraesCS7B01G208600.1	Wheat	nucleus	71.12	61.4
Zm00001d024701_P001	Maize	nucleus	70.83	61.23
EES14500	Sorghum	nucleus	71.99	60.93
PGSC0003DMT400094124	Potato	nucleus	64.3	58.6
PGSC0003DMT400048971	Potato	nucleus	45.57	55.28
PGSC0003DMT400071377	Potato	nucleus	57.62	48.36
PGSC0003DMT400019986	Potato	nucleus	55.3	47.1
PGSC0003DMT400069312	Potato	nucleus	48.48	46.71
PGSC0003DMT400006155	Potato	nucleus	47.46	42.8
PGSC0003DMT400033830	Potato	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	21.19	41.48
PGSC0003DMT400006770	Potato	nucleus	46.15	41.19
PGSC0003DMT400076898	Potato	cytosol	28.88	40.2
PGSC0003DMT400037397	Potato	cytosol	28.45	39.92
PGSC0003DMT400037055	Potato	nucleus	47.02	39.9
Os08t0187500-01	Rice	nucleus	18.43	38.96
PGSC0003DMT400062470	Potato	cytosol, nucleus, plastid	16.4	37.17
PGSC0003DMT400062468	Potato	cytosol	19.01	36.69
PGSC0003DMT400086035	Potato	nucleus	34.25	35.92
PGSC0003DMT400042908	Potato	nucleus	25.83	35.74
PGSC0003DMT400028197	Potato	cytosol	17.27	35.74
PGSC0003DMT400085057	Potato	cytosol	24.67	35.56
PGSC0003DMT400051268	Potato	cytosol	25.25	34.87
PGSC0003DMT400080861	Potato	nucleus	22.93	34.42
PGSC0003DMT400034503	Potato	cytosol, nucleus	33.82	34.21
PGSC0003DMT400092271	Potato	nucleus	13.06	33.96
PGSC0003DMT400095083	Potato	cytosol	5.95	33.88
PGSC0003DMT400028195	Potato	nucleus	18.72	33.86
PGSC0003DMT400076902	Potato	nucleus	32.8	33.73
PGSC0003DMT400038820	Potato	extracellular	17.56	33.24
PGSC0003DMT400095329	Potato	cytosol	13.06	32.61
PGSC0003DMT400036411	Potato	nucleus	23.51	30.86
PGSC0003DMT400051266	Potato	cytosol	16.98	30.08

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	Gene3D:3.30.530.20	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393
UniProt:M1C857	PFAM:PF00046	PFAM:PF01852	EnsemblPlantsGene:PGSC0003DMG400024068	PGSC:PGSC0003DMG400024068	EnsemblPlants:PGSC0003DMT400061859
PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF320	SMART:SM00234	SMART:SM00389
SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	UniParc:UPI000295E6AC	SEG:seg

Description

Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400024068]

Coordinates

chr3:-:2640480..2645773

Molecular Weight (calculated)

75266.8 Da

IEP (calculated)

5.957

GRAVY (calculated)

-0.277

Length

689 amino acids

Sequence
(BLAST)

001: MADIMENNPS GDDQEPDPNQ RPNKKKRYHR HTQLQIQEME SFFKECPHPD DKQRKELGKR LGLEPLQVKF WFQNKRTQMK AQHERHENSE LRAENEKLRA
101: DNIRYKEALG NTTCPNCGGP ASIGEMSFDE QHLRIENARL REEIDRISGI AAKYVGKPML TYPNLPIGPT RSLDIGVGSF GPQTGLVGEM YSAGDLLRSV
201: SGPIDADKPM IIELAVAAME ELVRMAQTGE PLWITGPGPD NSIETLCEEE YVRTFPRGIG PKSLGLTTEA SRESAVVIMN HINLVEILMD VNQWTNVFAG
301: LVSRALTLDV LSTGVAGNYN GALQVMTAEF QVPSPLVPTR ENYFVRYCKH HADGTWAVVD VSLDNLRPSS VSRGRRRPSG CLIQELPNGY SKVTWIEHVE
401: VDDRGVHNIY RPLVNSGLAF GAKRWVATLD RQCERLASAM ANNIPTGDIG VITSPEGRKS MLKLAERLVM SFCAGVGAST AHTWTTLSGS GADDVRVMTR
501: KSIDDPGRPP GIVLSAATSF WLPVPPKRVF DFLRDENSRS EWDILSNGGL VQEMAHIANG RDPGNCVSLL RVNSGNSSQS NMLILQESST DSTGSYVIYA
601: PVDIVAMNVV LSGGDPDYVA LLPSGFAILP DGGGGIDVGT RGSLLTVAFQ ILVDSVPTAK LSLGSVATVN SLIKCTVERI KTAVACDNA

Best Arabidopsis Sequence Match ( AT4G04890.1 )
(BLAST)

001: MYHPNMFESH HMFDMTPKST SDNDLGITGS REDDFETKSG TEVTTENPSG EELQDPSQRP NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRDLN
101: LEPLQVKFWF QNKRTQMKAQ SERHENQILK SDNDKLRAEN NRYKEALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE EIDRISAIAA KYVGKPLGSS
201: FAPLAIHAPS RSLDLEVGNF GNQTGFVGEM YGTGDILRSV SIPSETDKPI IVELAVAAME ELVRMAQTGD PLWLSTDNSV EILNEEEYFR TFPRGIGPKP
301: LGLRSEASRQ SAVVIMNHIN LVEILMDVNQ WSCVFSGIVS RALTLEVLST GVAGNYNGAL QVMTAEFQVP SPLVPTRENY FVRYCKQHSD GSWAVVDVSL
401: DSLRPSTPIL RTRRRPSGCL IQELPNGYSK VTWIEHMEVD DRSVHNMYKP LVQSGLAFGA KRWVATLERQ CERLASSMAS NIPGDLSVIT SPEGRKSMLK
501: LAERMVMSFC SGVGASTAHA WTTMSTTGSD DVRVMTRKSM DDPGRPPGIV LSAATSFWIP VAPKRVFDFL RDENSRKEWD ILSNGGMVQE MAHIANGHEP
601: GNCVSLLRVN SGNSSQSNML ILQESCTDAS GSYVIYAPVD IVAMNVVLSG GDPDYVALLP SGFAILPDGS VGGGDGNQHQ EMVSTTSSGS CGGSLLTVAF
701: QILVDSVPTA KLSLGSVATV NSLIKCTVER IKAAVSCDVG GGA

Arabidopsis Description

PDF2Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V99]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.