Factsheet for PGSC0003DMT400076898

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400062470	Potato	cytosol, nucleus, plastid	37.58	61.18
PGSC0003DMT400062468	Potato	cytosol	35.96	49.86
PGSC0003DMT400095083	Potato	cytosol	11.52	47.11
PGSC0003DMT400028197	Potato	cytosol	31.31	46.55
PGSC0003DMT400086035	Potato	nucleus	54.75	41.25
PGSC0003DMT400095329	Potato	cytosol	21.41	38.41
PGSC0003DMT400042908	Potato	nucleus	37.58	37.35
PGSC0003DMT400076902	Potato	nucleus	48.28	35.67
CDX89415	Canola	cytosol, mitochondrion	12.12	33.71
PGSC0003DMT400080861	Potato	nucleus	30.51	32.9
PGSC0003DMT400048971	Potato	nucleus	34.75	30.28
KRH35356	Soybean	nucleus	44.65	28.89
PGSC0003DMT400061859	Potato	nucleus	40.2	28.88
PGSC0003DMT400085057	Potato	cytosol	27.68	28.66
KRG91457	Soybean	nucleus	44.44	28.31
PGSC0003DMT400029291	Potato	nucleus	39.8	28.26
PGSC0003DMT400071377	Potato	nucleus	46.26	27.89
PGSC0003DMT400037055	Potato	nucleus	45.25	27.59
PGSC0003DMT400028195	Potato	nucleus	21.21	27.56
PGSC0003DMT400051268	Potato	cytosol	27.68	27.45
PGSC0003DMT400019986	Potato	nucleus	44.85	27.44
CDY31916	Canola	nucleus	36.97	27.19
CDY00515	Canola	nucleus	36.77	27.04
Bra028295.1-P	Field mustard	nucleus	37.17	26.98
PGSC0003DMT400038820	Potato	extracellular	19.8	26.92
PGSC0003DMT400005277	Potato	nucleus	39.8	26.88
KRH38560	Soybean	nucleus	41.41	26.42
KRH09109	Soybean	plastid	40.61	25.94
PGSC0003DMT400069312	Potato	nucleus	37.17	25.73
PGSC0003DMT400037397	Potato	cytosol	25.05	25.25
PGSC0003DMT400036411	Potato	nucleus	26.06	24.57
CDY39874	Canola	plasma membrane	9.29	23.96
PGSC0003DMT400051266	Potato	cytosol	18.79	23.91
PGSC0003DMT400094124	Potato	nucleus	36.16	23.68
PGSC0003DMT400006155	Potato	nucleus	35.35	22.91
PGSC0003DMT400006770	Potato	nucleus	35.56	22.8
CDX89416	Canola	nucleus	29.49	22.5
Bra013898.1-P	Field mustard	nucleus	28.28	22.47
PGSC0003DMT400033830	Potato	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	15.35	21.59
CDX94443	Canola	cytosol	27.27	21.5
AT4G26920.1	Thale cress	cytosol, plasma membrane, plastid	18.99	20.39
PGSC0003DMT400034503	Potato	cytosol, nucleus	27.47	19.97
AT5G07260.1	Thale cress	cytosol	20.61	18.85
PGSC0003DMT400092271	Potato	nucleus	8.69	16.23
VIT_13s0067g01580.t01	Wine grape	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400076898	EnsemblPlantsGene:PGSC0003DMG400029913	GO:GO:0003674	GO:GO:0005488	GO:GO:0008289	InterPro:IPR002913
InterPro:START_lipid-bd_dom	PANTHER:PTHR24326	PANTHER:PTHR24326:SF320	PFAM:PF01852	PFscan:PS50848	PGSC:PGSC0003DMG400029913
SEG:seg	SMART:SM00234	SUPFAM:SSF55961	UniParc:UPI00029665B1	UniProt:M1CXK3	MapMan:15.5.3.3

Description

Homeobox protein [Source:PGSC_GENE;Acc:PGSC0003DMG400029913]

Coordinates

chr6:+:37273513..37279264

Molecular Weight (calculated)

55865.0 Da

IEP (calculated)

8.413

GRAVY (calculated)

-0.130

Length

495 amino acids

Sequence
(BLAST)

001: MEYDKSVLMN HSLAAMNELL KLAMIDEPLW VRSLDGSVET LNVEEYARSF TQFNCMKSRD FRTDATRASR RMINNGLTLM EILMDKNLWM EMFPCIIGKT
101: STVDVISTSI GGSKSGILQL IYTELQMISD LVSVREITFL RYCHQYAKDI WVIVDVSVDM INKGAQQCEI RNCRRFPSGC VVQDLLNGYS KITWIEHMEY
201: NENVVHHMYR PMVRSGIGFG AQRWMATLQR QSVFLGLMRS FNDPTVGLNG EKNVGMLAQR MTHNFCAGVC GTTHQWQIIQ LAKGKGVKLM KRNNISDLGE
301: PSGTVLSATK TIWLPVKHQR LFEFLMNEQT RSQWDVWTIS YFMKLMVYIP KDHNIDNNIS LFHVNGHDTS TNQNNMMILQ DTCTDATGSL LVYATMDSLA
401: MNVVKKKGDP SGVALFPCGI AIVPDSFQDY NTANNFNRIL GENDNGFCGG SLVTIGFQML VKTIHSKKHT IESAKKANGI ISGIINGIKT SLKCK

Best Arabidopsis Sequence Match ( AT3G61150.1 )
(BLAST)

001: MNFNGFLDDG AGASKLLSDA PYNNHFSFSA VDTMLGSAAI APSQSLPFSS SGLSLGLQTN GEMSRNGEIM ESNVSRKSSR GEDVESRSES DNAEAVSGDD
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST

Arabidopsis Description

HDG1HDG1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5Q4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.