Factsheet for PGSC0003DMT400028195

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400092271	Potato	nucleus	54.59	78.49
PGSC0003DMT400080861	Potato	nucleus	77.69	64.49
PGSC0003DMT400042908	Potato	nucleus	81.89	62.65
PGSC0003DMT400028197	Potato	cytosol	42.52	48.65
PGSC0003DMT400095083	Potato	cytosol	13.39	42.15
PGSC0003DMT400062468	Potato	cytosol	37.8	40.34
PGSC0003DMT400095329	Potato	cytosol	26.25	36.23
Solyc06g050160.2.1	Tomato	nucleus	61.42	35.83
PGSC0003DMT400062470	Potato	cytosol, nucleus, plastid	26.51	33.22
PGSC0003DMT400086035	Potato	nucleus	48.03	27.85
CDY39874	Canola	plasma membrane	12.6	25.0
PGSC0003DMT400076902	Potato	nucleus	39.63	22.54
VIT_13s0067g01580.t01	Wine grape	nucleus	6.3	21.43
PGSC0003DMT400076898	Potato	cytosol	27.56	21.21
PGSC0003DMT400037055	Potato	nucleus	44.88	21.06
PGSC0003DMT400033830	Potato	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	19.16	20.74
PGSC0003DMT400071377	Potato	nucleus	44.36	20.58
KRH09109	Soybean	plastid	41.73	20.52
KRH35356	Soybean	nucleus	40.42	20.13
KRG91457	Soybean	nucleus	40.68	19.95
Bra028295.1-P	Field mustard	nucleus	35.17	19.65
CDY31916	Canola	nucleus	34.65	19.61
PGSC0003DMT400019986	Potato	nucleus	41.47	19.53
KRH38560	Soybean	nucleus	39.63	19.46
CDY00515	Canola	nucleus	33.86	19.17
PGSC0003DMT400061859	Potato	nucleus	33.86	18.72
PGSC0003DMT400029291	Potato	nucleus	34.12	18.65
PGSC0003DMT400005277	Potato	nucleus	35.7	18.55
PGSC0003DMT400069312	Potato	nucleus	32.81	17.48
PGSC0003DMT400094124	Potato	nucleus	33.33	16.8
PGSC0003DMT400006155	Potato	nucleus	31.23	15.58
PGSC0003DMT400006770	Potato	nucleus	31.5	15.54
PGSC0003DMT400048971	Potato	nucleus	21.52	14.44
CDX94443	Canola	cytosol	22.83	13.85
Bra013898.1-P	Field mustard	nucleus	22.57	13.8
CDX89416	Canola	nucleus	22.83	13.41
PGSC0003DMT400038820	Potato	extracellular	12.6	13.19
PGSC0003DMT400034503	Potato	cytosol, nucleus	21.78	12.19
AT5G07260.1	Thale cress	cytosol	15.75	11.09
PGSC0003DMT400051266	Potato	cytosol	11.02	10.8
PGSC0003DMT400085057	Potato	cytosol	13.12	10.46
PGSC0003DMT400037397	Potato	cytosol	12.86	9.98
PGSC0003DMT400051268	Potato	cytosol	12.86	9.82
AT4G26920.1	Thale cress	cytosol, plasma membrane, plastid	11.81	9.76
PGSC0003DMT400036411	Potato	nucleus	11.81	8.57
CDX89415	Canola	cytosol, mitochondrion	1.05	2.25

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913
UniProt:M1AQT8	PFAM:PF00046	PFAM:PF01852	EnsemblPlantsGene:PGSC0003DMG400010874	PGSC:PGSC0003DMG400010874	EnsemblPlants:PGSC0003DMT400028195
ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF320	SMART:SM00234
SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	UniParc:UPI000296699D	:

Description

Homeobox protein [Source:PGSC_GENE;Acc:PGSC0003DMG400010874]

Coordinates

chr6:-:32375086..32381743

Molecular Weight (calculated)

42730.1 Da

IEP (calculated)

5.971

GRAVY (calculated)

-0.459

Length

381 amino acids

Sequence
(BLAST)

001: MEGHSDMNER KESLINVVIG GSGEEEIQRS SIGDKITGGA YVDERGESSS KRKKPIRHNV DQIQELETFF KKNSLPNKKV RLELATKLSM DINQVQNWFQ
101: NKRTQMKLQL ELYKTKTLKQ ENDKLRIENI VMKEALVNSI RDNYKENIDE NQIKIEHDQL EDEVKRLTTQ ALYENDKPLC VSSLDGGGET LNIKEYARLF
201: TLLIGTKPEH FTTEATRASG TVADTSLALR QWVEMFACIV GKTYTTDVIS TGIGGNKSGS LLLIKTELQI ISDLVSVREV QFLRFCKKHV EGVWAFVDVS
301: VDTIQEGSQE SEIENCRRLP SGCILQDMPN GYCQSKGPRT VGPAMDLGPV VADFGTPYYS PLHGPCEGSQ TVKVLVVLHL G

Best Arabidopsis Sequence Match ( AT4G04890.1 )
(BLAST)

001: MYHPNMFESH HMFDMTPKST SDNDLGITGS REDDFETKSG TEVTTENPSG EELQDPSQRP NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRDLN
101: LEPLQVKFWF QNKRTQMKAQ SERHENQILK SDNDKLRAEN NRYKEALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE EIDRISAIAA KYVGKPLGSS
201: FAPLAIHAPS RSLDLEVGNF GNQTGFVGEM YGTGDILRSV SIPSETDKPI IVELAVAAME ELVRMAQTGD PLWLSTDNSV EILNEEEYFR TFPRGIGPKP
301: LGLRSEASRQ SAVVIMNHIN LVEILMDVNQ WSCVFSGIVS RALTLEVLST GVAGNYNGAL QVMTAEFQVP SPLVPTRENY FVRYCKQHSD GSWAVVDVSL
401: DSLRPSTPIL RTRRRPSGCL IQELPNGYSK VTWIEHMEVD DRSVHNMYKP LVQSGLAFGA KRWVATLERQ CERLASSMAS NIPGDLSVIT SPEGRKSMLK
501: LAERMVMSFC SGVGASTAHA WTTMSTTGSD DVRVMTRKSM DDPGRPPGIV LSAATSFWIP VAPKRVFDFL RDENSRKEWD ILSNGGMVQE MAHIANGHEP
601: GNCVSLLRVN SGNSSQSNML ILQESCTDAS GSYVIYAPVD IVAMNVVLSG GDPDYVALLP SGFAILPDGS VGGGDGNQHQ EMVSTTSSGS CGGSLLTVAF
701: QILVDSVPTA KLSLGSVATV NSLIKCTVER IKAAVSCDVG GGA

Arabidopsis Description

PDF2Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V99]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.