Factsheet for PGSC0003DMT400029291

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g005330.2.1	Tomato	nucleus	96.27	94.24
PGSC0003DMT400061859	Potato	nucleus	81.49	82.44
VIT_10s0116g00680.t01	Wine grape	nucleus	81.64	78.37
GSMUA_Achr3P23090_001	Banana	endoplasmic reticulum, plasma membrane	72.17	76.21
PGSC0003DMT400005277	Potato	nucleus	78.19	74.35
Os04t0627000-02	Rice	cytosol, peroxisome	60.69	72.18
GSMUA_Achr8P07310_001	Banana	mitochondrion, nucleus	72.88	69.97
GSMUA_Achr10P...	Banana	nucleus	68.58	66.85
EES11464	Sorghum	nucleus	75.04	66.29
EES13460	Sorghum	mitochondrion, nucleus	72.6	64.79
GSMUA_Achr11P...	Banana	plastid	73.31	64.77
TraesCS2B01G497500.1	Wheat	nucleus	71.16	64.0
TraesCS2D01G473700.1	Wheat	nucleus	71.16	63.92
TraesCS2A01G474000.1	Wheat	nucleus	71.16	63.84
Zm00001d049443_P005	Maize	nucleus	72.88	63.82
Zm00001d002234_P003	Maize	nucleus	72.6	63.73
Os08t0136100-01	Rice	nucleus	71.74	63.69
Zm00001d026351_P003	Maize	nucleus	74.17	61.26
Zm00001d000247_P001	Maize	plasma membrane	62.55	60.64
TraesCS7D01G305200.1	Wheat	nucleus	68.87	60.3
TraesCS7A01G308400.1	Wheat	nucleus	68.87	60.3
Zm00001d024701_P001	Maize	nucleus	68.87	60.23
TraesCS7B01G208600.1	Wheat	nucleus	68.72	60.03
EES14500	Sorghum	nucleus	69.87	59.83
PGSC0003DMT400094124	Potato	nucleus	60.69	55.95
PGSC0003DMT400048971	Potato	nucleus	43.47	53.35
PGSC0003DMT400071377	Potato	nucleus	56.67	48.11
PGSC0003DMT400069312	Potato	nucleus	48.21	46.99
PGSC0003DMT400019986	Potato	nucleus	53.8	46.35
Os08t0187500-01	Rice	nucleus	19.8	42.33
PGSC0003DMT400006155	Potato	nucleus	45.48	41.49
PGSC0003DMT400033830	Potato	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	20.37	40.34
PGSC0003DMT400037055	Potato	nucleus	46.77	40.15
PGSC0003DMT400076898	Potato	cytosol	28.26	39.8
PGSC0003DMT400037397	Potato	cytosol	27.83	39.51
PGSC0003DMT400006770	Potato	nucleus	43.76	39.51
PGSC0003DMT400086035	Potato	nucleus	34.86	36.99
PGSC0003DMT400042908	Potato	nucleus	26.11	36.55
PGSC0003DMT400092271	Potato	nucleus	13.77	36.23
PGSC0003DMT400062470	Potato	cytosol, nucleus, plastid	15.78	36.18
PGSC0003DMT400062468	Potato	cytosol	18.51	36.13
PGSC0003DMT400080861	Potato	nucleus	23.24	35.29
PGSC0003DMT400085057	Potato	cytosol	23.67	34.52
PGSC0003DMT400028197	Potato	cytosol	16.36	34.23
PGSC0003DMT400028195	Potato	nucleus	18.65	34.12
PGSC0003DMT400051268	Potato	cytosol	23.96	33.47
PGSC0003DMT400034503	Potato	cytosol, nucleus	32.42	33.19
PGSC0003DMT400076902	Potato	nucleus	31.71	32.99
PGSC0003DMT400038820	Potato	extracellular	17.22	32.97
PGSC0003DMT400095083	Potato	cytosol	5.6	32.23
PGSC0003DMT400036411	Potato	nucleus	23.39	31.05
PGSC0003DMT400095329	Potato	cytosol	12.05	30.43
PGSC0003DMT400051266	Potato	cytosol	16.64	29.82

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	Gene3D:3.30.530.20	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393
UniProt:M1ASJ0	PFAM:PF00046	PFAM:PF01852	EnsemblPlantsGene:PGSC0003DMG400011256	PGSC:PGSC0003DMG400011256	EnsemblPlants:PGSC0003DMT400029291
PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF349	SMART:SM00234	SMART:SM00389
SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	UniParc:UPI000294F6D3	SEG:seg

Description

Homeobox-leucine zipper protein MERISTEM L1 [Source:PGSC_GENE;Acc:PGSC0003DMG400011256]

Coordinates

chr10:-:375916..383833

Molecular Weight (calculated)

76785.1 Da

IEP (calculated)

5.586

GRAVY (calculated)

-0.360

Length

697 amino acids

Sequence
(BLAST)

001: MTRKTPENEL DLIRDDEFET KSGTDIMEGA SGDDQDPNKR PKKKQYHRHT QHQIQELESF FKECPHPDDK QRKDLGKRLG LEPLQVKFWF QNKRTQMKSQ
101: HERHENTQLR NENDKLRAEN IRYKEALTTA TCPNCGGPAA IGEMSFDEQH LRIENARLRE EIDRISGIAA KYVGKPMLNY PQLPSLGGHQ LGEMFTTTTT
201: GGDLLRSISG PSDADKPIVI ELAVSAMEEL IRLAQTGEPL WINSDNNNND NVLLNEEEYA RTFPRGIGPK SLALKSEASR ESALVIINYV NLVEILMDVN
301: QWTNFFTGIV SKATILEVLS TGVAGNYNGA LQVMTAEFQV PSPLVPTREN YFVRYCKQHG DGTWAVVDVS LENLRSTSVS RCRRRPSGCV IQELPNGYSK
401: VTWIEHVEVD DRAVNNIYRP LVDSGLAFGA KRWVATLERQ CERLASVMAS NIPTGDVITS PEGRKSMLKL AERMVMSFCA GVGASTAHTW TTLSGSGADD
501: VRVMTRKSID DPGRPPGIVL SAATSFWMPV PTKRVFDFLR DENSRNEWDI LSNGGLVQEM AHIANGRDSG NSVSLLRVNS GNSSQNNMLI LQESCLDTTG
601: SYVIYAPVDI AAMNVVLSGG DPDYVALLPS GFAILPDGSS NAENSNAAGG SLLTVAFQIL VDSVPTAKLS LGSVATVNSL IKCTVERIKA SITCEIA

Best Arabidopsis Sequence Match ( AT4G04890.1 )
(BLAST)

001: MYHPNMFESH HMFDMTPKST SDNDLGITGS REDDFETKSG TEVTTENPSG EELQDPSQRP NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRDLN
101: LEPLQVKFWF QNKRTQMKAQ SERHENQILK SDNDKLRAEN NRYKEALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE EIDRISAIAA KYVGKPLGSS
201: FAPLAIHAPS RSLDLEVGNF GNQTGFVGEM YGTGDILRSV SIPSETDKPI IVELAVAAME ELVRMAQTGD PLWLSTDNSV EILNEEEYFR TFPRGIGPKP
301: LGLRSEASRQ SAVVIMNHIN LVEILMDVNQ WSCVFSGIVS RALTLEVLST GVAGNYNGAL QVMTAEFQVP SPLVPTRENY FVRYCKQHSD GSWAVVDVSL
401: DSLRPSTPIL RTRRRPSGCL IQELPNGYSK VTWIEHMEVD DRSVHNMYKP LVQSGLAFGA KRWVATLERQ CERLASSMAS NIPGDLSVIT SPEGRKSMLK
501: LAERMVMSFC SGVGASTAHA WTTMSTTGSD DVRVMTRKSM DDPGRPPGIV LSAATSFWIP VAPKRVFDFL RDENSRKEWD ILSNGGMVQE MAHIANGHEP
601: GNCVSLLRVN SGNSSQSNML ILQESCTDAS GSYVIYAPVD IVAMNVVLSG GDPDYVALLP SGFAILPDGS VGGGDGNQHQ EMVSTTSSGS CGGSLLTVAF
701: QILVDSVPTA KLSLGSVATV NSLIKCTVER IKAAVSCDVG GGA

Arabidopsis Description

PDF2Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V99]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.