Factsheet for PGSC0003DMT400062470

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400062468	Potato	cytosol	78.95	67.23
PGSC0003DMT400028197	Potato	cytosol	58.55	53.45
PGSC0003DMT400095083	Potato	cytosol	18.75	47.11
PGSC0003DMT400042908	Potato	nucleus	70.07	42.77
PGSC0003DMT400076898	Potato	cytosol	61.18	37.58
PGSC0003DMT400080861	Potato	nucleus	54.61	36.17
Solyc06g050160.2.1	Tomato	nucleus	67.11	31.24
PGSC0003DMT400086035	Potato	nucleus	60.53	28.01
PGSC0003DMT400095329	Potato	cytosol	24.34	26.81
PGSC0003DMT400028195	Potato	nucleus	33.22	26.51
PGSC0003DMT400076902	Potato	nucleus	45.07	20.45
CDX89415	Canola	cytosol, mitochondrion	11.51	19.66
PGSC0003DMT400085057	Potato	cytosol	30.59	19.46
CDY00515	Canola	nucleus	41.45	18.72
CDY31916	Canola	nucleus	41.12	18.57
Bra028295.1-P	Field mustard	nucleus	41.45	18.48
PGSC0003DMT400051268	Potato	cytosol	30.26	18.44
PGSC0003DMT400019986	Potato	nucleus	48.03	18.05
PGSC0003DMT400071377	Potato	nucleus	48.68	18.03
KRH35356	Soybean	nucleus	45.07	17.91
KRG91457	Soybean	nucleus	45.39	17.76
PGSC0003DMT400037055	Potato	nucleus	47.37	17.73
CDY39874	Canola	plasma membrane	11.18	17.71
PGSC0003DMT400038820	Potato	extracellular	20.72	17.31
Bra013898.1-P	Field mustard	nucleus	34.87	17.01
PGSC0003DMT400048971	Potato	nucleus	31.25	16.73
CDX89416	Canola	nucleus	35.53	16.64
CDX94443	Canola	cytosol	33.88	16.4
PGSC0003DMT400061859	Potato	nucleus	37.17	16.4
PGSC0003DMT400033830	Potato	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	18.75	16.19
KRH09109	Soybean	plastid	40.79	16.0
PGSC0003DMT400005277	Potato	nucleus	38.49	15.96
PGSC0003DMT400069312	Potato	nucleus	37.5	15.94
KRH38560	Soybean	nucleus	40.46	15.85
PGSC0003DMT400029291	Potato	nucleus	36.18	15.78
PGSC0003DMT400006770	Potato	nucleus	39.47	15.54
PGSC0003DMT400051266	Potato	cytosol	19.74	15.42
PGSC0003DMT400037397	Potato	cytosol	24.01	14.87
PGSC0003DMT400036411	Potato	nucleus	25.0	14.48
PGSC0003DMT400094124	Potato	nucleus	34.21	13.76
PGSC0003DMT400006155	Potato	nucleus	34.54	13.74
PGSC0003DMT400034503	Potato	cytosol, nucleus	28.95	12.92
AT5G07260.1	Thale cress	cytosol	21.38	12.01
AT4G26920.1	Thale cress	cytosol, plasma membrane, plastid	16.12	10.63
PGSC0003DMT400092271	Potato	nucleus	0.66	0.75
VIT_13s0067g01580.t01	Wine grape	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400062470	EnsemblPlantsGene:PGSC0003DMG400024313	GO:GO:0003674	GO:GO:0005488	GO:GO:0008289	InterPro:IPR002913
InterPro:START_lipid-bd_dom	PANTHER:PTHR24326	PANTHER:PTHR24326:SF320	PFAM:PF01852	PFscan:PS50848	PGSC:PGSC0003DMG400024313
SUPFAM:SSF55961	UniParc:UPI000295259E	UniProt:M1C946	MapMan:15.5.3.3	:	:

Description

HD domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400024313]

Coordinates

chr6:-:32187098..32189264

Molecular Weight (calculated)

33662.6 Da

IEP (calculated)

5.587

GRAVY (calculated)

0.027

Length

304 amino acids

Sequence
(BLAST)

001: MFPCIVGKTY TTDVIFTSIG GNKSGSLLLI KTELQIISDL VSVREVQYLR FCKKHAEGVW AIIDVSVDTI QEASQESEIE NCRRLPSGCI LQDISNGYCQ
101: VTWIEHMEYN ENLVHDWYHP LINTGLGFGA QRWMSTLQRQ YQFLKVMKSI IDPIVDLSGQ RGIRMLAQRM THNFCAGGDD SGANRVILQD TCMDATGSLL
201: VYATIDSQEI NTVMKVGDSS CVTLSSNGIT IVPDCFQDFS TTNNYNVISG EMNNGFGGGS LVIISFQMVG NIFPTTTLSM ELVKEANALI SHTIHKIKSA
301: LKCK

Best Arabidopsis Sequence Match ( AT3G61150.1 )
(BLAST)

001: MNFNGFLDDG AGASKLLSDA PYNNHFSFSA VDTMLGSAAI APSQSLPFSS SGLSLGLQTN GEMSRNGEIM ESNVSRKSSR GEDVESRSES DNAEAVSGDD
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST

Arabidopsis Description

HDG1HDG1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5Q4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.