Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400062468 | Potato | cytosol | 70.27 | 65.55 |
| PGSC0003DMT400042908 | Potato | nucleus | 92.19 | 61.65 |
| PGSC0003DMT400080861 | Potato | nucleus | 80.78 | 58.61 |
| PGSC0003DMT400062470 | Potato | cytosol, nucleus, plastid | 53.45 | 58.55 |
| PGSC0003DMT400092271 | Potato | nucleus | 37.54 | 47.17 |
| PGSC0003DMT400028195 | Potato | nucleus | 48.65 | 42.52 |
| PGSC0003DMT400095329 | Potato | cytosol | 31.83 | 38.41 |
| Solyc06g050160.2.1 | Tomato | nucleus | 66.67 | 34.0 |
| PGSC0003DMT400095083 | Potato | cytosol | 11.71 | 32.23 |
| PGSC0003DMT400076898 | Potato | cytosol | 46.55 | 31.31 |
| PGSC0003DMT400086035 | Potato | nucleus | 55.86 | 28.31 |
| PGSC0003DMT400076902 | Potato | nucleus | 42.94 | 21.34 |
| KRH35356 | Soybean | nucleus | 42.94 | 18.69 |
| CDX89415 | Canola | cytosol, mitochondrion | 9.91 | 18.54 |
| KRG91457 | Soybean | nucleus | 42.94 | 18.4 |
| CDY39874 | Canola | plasma membrane | 10.51 | 18.23 |
| PGSC0003DMT400019986 | Potato | nucleus | 44.14 | 18.17 |
| PGSC0003DMT400071377 | Potato | nucleus | 44.14 | 17.91 |
| KRH09109 | Soybean | plastid | 41.14 | 17.68 |
| PGSC0003DMT400061859 | Potato | nucleus | 35.74 | 17.27 |
| Bra028295.1-P | Field mustard | nucleus | 35.14 | 17.16 |
| KRH38560 | Soybean | nucleus | 39.94 | 17.14 |
| PGSC0003DMT400037055 | Potato | nucleus | 41.74 | 17.12 |
| CDY31916 | Canola | nucleus | 34.23 | 16.94 |
| PGSC0003DMT400005277 | Potato | nucleus | 37.24 | 16.92 |
| CDY00515 | Canola | nucleus | 33.93 | 16.79 |
| PGSC0003DMT400069312 | Potato | nucleus | 35.74 | 16.64 |
| PGSC0003DMT400029291 | Potato | nucleus | 34.23 | 16.36 |
| PGSC0003DMT400048971 | Potato | nucleus | 27.33 | 16.02 |
| Bra013898.1-P | Field mustard | nucleus | 29.73 | 15.89 |
| CDX94443 | Canola | cytosol | 29.13 | 15.45 |
| PGSC0003DMT400051268 | Potato | cytosol | 23.12 | 15.43 |
| CDX89416 | Canola | nucleus | 30.03 | 15.41 |
| PGSC0003DMT400085057 | Potato | cytosol | 21.62 | 15.06 |
| PGSC0003DMT400036411 | Potato | nucleus | 23.72 | 15.05 |
| AT4G26920.1 | Thale cress | cytosol, plasma membrane, plastid | 20.42 | 14.75 |
| PGSC0003DMT400094124 | Potato | nucleus | 33.33 | 14.68 |
| PGSC0003DMT400006155 | Potato | nucleus | 31.53 | 13.74 |
| PGSC0003DMT400006770 | Potato | nucleus | 31.83 | 13.73 |
| PGSC0003DMT400037397 | Potato | cytosol | 19.82 | 13.44 |
| AT5G07260.1 | Thale cress | cytosol | 21.62 | 13.31 |
| PGSC0003DMT400034503 | Potato | cytosol, nucleus | 25.83 | 12.63 |
| PGSC0003DMT400033830 | Potato | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 13.21 | 12.5 |
| PGSC0003DMT400038820 | Potato | extracellular | 11.41 | 10.44 |
| PGSC0003DMT400051266 | Potato | cytosol | 10.51 | 9.0 |
| VIT_13s0067g01580.t01 | Wine grape | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400028197 | EnsemblPlantsGene:PGSC0003DMG400010875 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008289 | InterPro:IPR002913 |
| InterPro:START_lipid-bd_dom | ncoils:Coil | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF320 | PFAM:PF01852 | PFscan:PS50848 |
| PGSC:PGSC0003DMG400010875 | SUPFAM:SSF55961 | UniParc:UPI000294DE57 | UniProt:M1AQT9 | MapMan:15.5.3.3 | : |
Description
Homeobox-leucine zipper protein ROC5 [Source:PGSC_GENE;Acc:PGSC0003DMG400010875]
Coordinates
chr6:-:32329078..32331953
Molecular Weight (calculated)
37169.4 Da
IEP (calculated)
4.517
GRAVY (calculated)
-0.149
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MKEALENSIR DNFKENIDEN QIKIEHDQLE DEVKRLTAQA YKLSLFNKDV VQDKMVLLNL AMDALNELFR LYENDKPLWV SSLDGGGETL NIKEYARLFS
101: PLIGTKPEHF TTEATRASDT VVETSLALVN TIMGKIKIEL QIISDLVYVR EVKFLRFCKK HAEGVWAIVD VSVDTIQEGS QQSENENCRR FPSGYILQDM
201: PNGYWQGDDS GANRVILQDT CMDATGSLLV YATIDSQEIN TVMKGGDSSC VTLFSNGITI VLDCFQDVFT TNNYNVISGE MNNGFGGGSL VIISFQMVGN
301: IFPATTLSME LVKEANALIS QTIHKIKSAL KCK
101: PLIGTKPEHF TTEATRASDT VVETSLALVN TIMGKIKIEL QIISDLVYVR EVKFLRFCKK HAEGVWAIVD VSVDTIQEGS QQSENENCRR FPSGYILQDM
201: PNGYWQGDDS GANRVILQDT CMDATGSLLV YATIDSQEIN TVMKGGDSSC VTLFSNGITI VLDCFQDVFT TNNYNVISGE MNNGFGGGSL VIISFQMVGN
301: IFPATTLSME LVKEANALIS QTIHKIKSAL KCK
001: MNFNGFLDDG AGASKLLSDA PYNNHFSFSA VDTMLGSAAI APSQSLPFSS SGLSLGLQTN GEMSRNGEIM ESNVSRKSSR GEDVESRSES DNAEAVSGDD
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST
Arabidopsis Description
HDG1HDG1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5Q4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.